Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g028440 Amaranthus hybridus HOM05D007194 ORTHO05D009182 0.0e+00 1238.0 626 100.0
EL10Ac7g17455 Beta vulgaris HOM05D007194 ORTHO05D009182 3.8e-101 373.2 198 94.4
Cfa021340 Carpinus fangiana HOM05D007194 ORTHO05D009182 5.3e-95 352.8 198 91.9
AL3G44600 Arabidopsis lyrata HOM05D007194 ORTHO05D009182 5.9e-94 349.4 198 89.9
Sp3g25540 Schrenkiella parvula HOM05D007194 ORTHO05D009182 3.8e-93 346.7 198 89.9
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 5.0e-93 346.3 198 90.4
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 5.0e-93 346.3 198 90.4
AT2G07771 Arabidopsis thaliana HOM05D007194 ORTHO05D009182 1.4e-92 344.7 198 89.4
ATMG00900 Arabidopsis thaliana HOM05D007194 ORTHO05D009182 1.4e-92 344.7 198 89.4
A04p09540 Brassica napus HOM05D007194 ORTHO05D009182 1.4e-92 344.7 198 89.4
BolSC28t60320H Brassica oleracea HOM05D007194 ORTHO05D009182 1.4e-92 344.7 198 89.4
BraSC48t46300Z Brassica rapa HOM05D007194 ORTHO05D009182 1.4e-92 344.7 198 89.4
LjContig00315g0023372 Lotus japonicus HOM05D007194 ORTHO05D009182 2.5e-92 344.0 198 89.9
CARHR283160 Cardamine hirsuta HOM05D007194 ORTHO05D009182 3.2e-92 343.6 198 88.9
Lj2P1233T109 Lonicera japonica HOM05D007194 ORTHO05D009182 3.2e-92 343.6 198 90.9
Nn1g09980 Nelumbo nucifera HOM05D007194 ORTHO05D009182 4.2e-92 343.2 198 90.4
arahy.Tifrunner.gnm1.ann1.14Z8E4 Arachis hypogaea HOM05D007194 ORTHO05D009182 1.2e-91 341.7 198 89.4
arahy.Tifrunner.gnm1.ann1.F9VS0T Arachis hypogaea HOM05D007194 ORTHO05D009182 1.2e-91 341.7 198 89.4
arahy.Tifrunner.gnm1.ann1.SBV1ZL Arachis hypogaea HOM05D007194 ORTHO05D009182 1.2e-91 341.7 198 89.4
Dinv06723 Davidia involucrata HOM05D007194 ORTHO05D009182 2.7e-91 340.5 214 84.6
Sed0021793 Sechium edule HOM05D007194 ORTHO05D009182 2.7e-91 340.5 195 90.3
CAN.G1690.2 Capsicum annuum HOM05D007194 ORTHO05D009182 3.6e-91 340.1 198 89.4
Aa31csc239G110 Aethionema arabicum HOM05D007194 ORTHO05D009182 4.7e-91 339.7 198 87.9
Lalb_Chr00c24g0406951 Lupinus albus HOM05D007194 ORTHO05D009182 1.4e-90 338.2 212 83.5
CANSAT16G0047 Cannabis sativa HOM05D007194 ORTHO05D009182 6.7e-90 335.9 198 88.4
Lalb_Chr17g0337381 Lupinus albus HOM05D007194 ORTHO05D009182 6.7e-90 335.9 212 82.5
RcHm_v2.0_MTg0498961 Rosa chinensis HOM05D007194 ORTHO05D009182 6.7e-90 335.9 198 88.4
HanXRQChr16g0504451 Helianthus annuus HOM05D007194 ORTHO05D009182 8.8e-90 335.5 198 87.9
HanXRQMTg0579111 Helianthus annuus HOM05D007194 ORTHO05D009182 8.8e-90 335.5 198 87.9
Lsat_1_v5_gn_7_100841 Lactuca sativa HOM05D007194 ORTHO05D009182 8.8e-90 335.5 198 87.9
Lsat_1_v5_gn_7_99901 Lactuca sativa HOM05D007194 ORTHO05D009182 8.8e-90 335.5 198 87.9
DCAR_032453 Daucus carota HOM05D007194 ORTHO05D009182 1.1e-89 335.1 198 88.9
TPR.G39619 Trifolium pratense HOM05D007194 ORTHO05D009182 4.4e-89 333.2 200 87.0
Gorai.001G165900 Gossypium raimondii HOM05D007194 ORTHO05D009182 5.7e-89 332.8 198 87.9
Solyc00g500242.1 Solanum lycopersicum HOM05D007194 ORTHO05D009182 5.7e-89 332.8 197 87.8
Solyc00g500277.1 Solanum lycopersicum HOM05D007194 ORTHO05D009182 5.7e-89 332.8 197 87.8
Lsat_1_v5_gn_1_67041 Lactuca sativa HOM05D007194 ORTHO05D009182 4.8e-88 329.7 196 86.7
Aqoxy3G01137 Aquilegia oxysepala HOM05D007194 ORTHO05D009182 1.1e-87 328.6 198 87.9
Psat0s922g0240 Pisum sativum HOM05D007194 ORTHO05D009182 1.1e-87 328.6 191 89.0
SGA_v2.0_scaffold400G50840 Striga asiatica HOM05D007194 ORTHO05D009182 7.0e-87 325.9 197 86.8
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.6e-86 324.7 198 85.4
CAN.G85.20 Capsicum annuum HOM05D007194 ORTHO05D009182 8.5e-85 318.9 198 85.4
Lsat_1_v5_gn_6_37840 Lactuca sativa HOM05D007194 ORTHO05D009182 1.0e-82 312.0 198 82.3
SHI36965 Sapria himalayana HOM05D007194 ORTHO05D009182 1.8e-82 311.2 197 83.2
SHI36846 Sapria himalayana HOM05D007194 ORTHO05D009182 2.3e-82 310.8 198 82.8
arahy.Tifrunner.gnm1.ann1.GM5VKV Arachis hypogaea HOM05D007194 ORTHO05D009182 4.0e-82 310.1 198 83.3
AT2G07681 Arabidopsis thaliana HOM05D007194 ORTHO05D009182 1.2e-81 308.5 194 84.0
Lsat_1_v5_gn_4_20401 Lactuca sativa HOM05D007194 ORTHO05D009182 1.7e-80 304.7 195 81.5
Sed0000988 Sechium edule HOM05D007194 ORTHO05D009182 1.4e-79 301.6 170 91.2
Prupe.1G175300 Prunus persica HOM05D007194 ORTHO05D009182 2.7e-78 297.4 198 80.8
BolSC28t60390H Brassica oleracea HOM05D007194 ORTHO05D009182 5.0e-77 293.1 165 89.7
BraSC48t46335Z Brassica rapa HOM05D007194 ORTHO05D009182 5.0e-77 293.1 165 89.7
TWI15G0311 Tripterygium wilfordii HOM05D007194 ORTHO05D009182 1.1e-76 292.0 163 91.4
Sopen00g002730 Solanum pennellii HOM05D007194 ORTHO05D009182 4.0e-74 283.5 186 80.1
Lj5P380T4 Lonicera japonica HOM05D007194 ORTHO05D009182 3.4e-73 280.4 193 78.2
BolSC28t60422H Brassica oleracea HOM05D007194 ORTHO05D009182 2.4e-71 274.2 165 86.7
Lj2P1235T102 Lonicera japonica HOM05D007194 ORTHO05D009182 4.1e-71 273.5 160 89.4
SalBow1G0339 Salvia bowleyana HOM05D007194 ORTHO05D009182 8.6e-69 265.8 212 67.9
Nitab4.5_0001152g0940 Nicotiana tabacum HOM05D007194 ORTHO05D009182 3.6e-67 260.4 163 81.6
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 4.4e-65 253.4 171 77.2
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.7e-64 251.5 239 60.7
EL10Ac8g19071 Beta vulgaris HOM05D007194 ORTHO05D009182 3.7e-64 250.4 142 88.7
Eucgr.I01863 Eucalyptus grandis HOM05D007194 ORTHO05D009182 1.3e-61 241.9 141 87.9
ECA039G0021 Erigeron canadensis HOM05D007194 ORTHO05D009182 2.3e-61 241.1 140 87.9
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 1.5e-60 238.4 133 91.0
Lsat_1_v5_gn_5_17681 Lactuca sativa HOM05D007194 ORTHO05D009182 3.3e-60 237.3 152 82.2
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.6e-59 235.0 172 76.2
arahy.Tifrunner.gnm1.ann1.UX1VFS Arachis hypogaea HOM05D007194 ORTHO05D009182 7.8e-54 216.1 128 86.7
QL93p0053_0961 Quercus lobata HOM05D007194 ORTHO05D009182 2.3e-50 204.5 112 90.2
TAR625G1253 Trochodendron aralioides HOM05D007194 ORTHO05D009182 2.9e-48 197.6 118 87.3
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.4e-47 194.5 121 84.3
CAN.G889.9 Capsicum annuum HOM05D007194 ORTHO05D009182 3.9e-45 187.2 107 89.7
CAN.G1542.2 Capsicum annuum HOM05D007194 ORTHO05D009182 1.8e-42 178.3 118 78.0
ATR0693G113 Amborella trichopoda HOM05D007194 ORTHO05D009182 2.2e-40 171.4 108 79.6
arahy.Tifrunner.gnm1.ann1.6A3TYM Arachis hypogaea HOM05D007194 ORTHO05D009182 3.7e-40 170.6 102 87.3
HanXRQChr05g0135281 Helianthus annuus HOM05D007194 ORTHO05D009182 6.4e-40 169.9 92 92.4
Lj1P486T6 Lonicera japonica HOM05D007194 ORTHO05D009182 1.4e-39 168.7 106 82.1
Ca_14744_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 1.2e-38 165.6 100 81.0
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 5.1e-37 160.2 100 84.0
SHI26663 Sapria himalayana HOM05D007194 ORTHO05D009182 3.3e-36 157.5 101 82.2
Glyma.19G075000 Glycine max HOM05D007194 ORTHO05D009182 1.4e-31 142.1 73 93.2
CAN.G1001.43 Capsicum annuum HOM05D000927 ORTHO05D000850 3.2e-31 141.0 77 87.0
CAN.G122.10 Capsicum annuum HOM05D007194 ORTHO05D009182 9.2e-31 139.4 92 77.2
CAN.G1134.4 Capsicum annuum HOM05D007194 ORTHO05D009182 2.1e-30 138.3 110 70.0
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 5.1e-29 133.7 79 82.3
Haze_27474 Corylus avellana HOM05D007194 ORTHO05D009182 2.5e-28 131.3 162 43.2
Gohir.A08G085962 Gossypium hirsutum HOM05D007194 ORTHO05D009182 2.5e-28 131.3 160 54.4
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 7.3e-28 129.8 72 84.7
CAN.G78.2 Capsicum annuum HOM05D007194 ORTHO05D009182 2.8e-27 127.9 68 89.7
unitig_87.g27964 Utricularia gibba HOM05D007194 ORTHO05D009182 2.8e-27 127.9 74 89.2
Gohir.A02G088502 Gossypium hirsutum HOM05D007194 ORTHO05D009182 1.8e-26 125.2 69 85.5
Manes.06G014501 Manihot esculenta HOM05D007194 ORTHO05D009182 1.4e-23 115.5 65 84.6
Peaxi162Scf00174g01622 Petunia axillaris HOM05D000219 ORTHO05D000226 2.4e-23 114.8 60 93.3
Solyc12g035840.1 Solanum lycopersicum HOM05D007194 ORTHO05D009182 5.4e-23 113.6 69 81.2
ClCG10G007880 Citrullus lanatus HOM05D007194 ORTHO05D009182 2.3e-21 108.2 73 79.5
BraSC48t46286Z Brassica rapa HOM05D007194 ORTHO05D009182 1.9e-20 105.1 62 85.5
arahy.Tifrunner.gnm1.ann1.QUEV48 Arachis hypogaea HOM05D009044 ORTHO05D011261 6.4e-16 90.1 104 44.2
Cc00_g01620 Coffea canephora HOM05D009044 ORTHO05D011261 6.4e-16 90.1 89 44.9
arahy.Tifrunner.gnm1.ann1.4L1UA2 Arachis hypogaea HOM05D009044 ORTHO05D011261 1.1e-15 89.4 104 44.2
arahy.Tifrunner.gnm1.ann1.AMEH8M Arachis hypogaea HOM05D009044 ORTHO05D011261 1.1e-15 89.4 104 44.2
arahy.Tifrunner.gnm1.ann1.K6P20N Arachis hypogaea HOM05D009044 ORTHO05D011261 1.1e-15 89.4 104 44.2
arahy.Tifrunner.gnm1.ann1.TYE1TB Arachis hypogaea HOM05D009044 ORTHO05D011261 1.1e-15 89.4 104 44.2
Lalb_Chr00c21g0405861 Lupinus albus HOM05D009044 ORTHO05D011261 1.1e-15 89.4 74 54.1
Lalb_Chr00c24g0406991 Lupinus albus HOM05D009044 ORTHO05D011261 1.1e-15 89.4 74 54.1
SHI24634 Sapria himalayana HOM05D007194 ORTHO05D009182 7.1e-15 86.7 147 42.2
arahy.Tifrunner.gnm1.ann1.2Y9TRI Arachis hypogaea HOM05D009044 ORTHO05D011261 3.0e-13 81.3 67 53.7
CAN.G380.6 Capsicum annuum HOM05D007194 ORTHO05D009182 4.3e-12 77.4 55 72.7
TPR.G10887 Trifolium pratense HOM05D009044 ORTHO05D011261 4.3e-12 77.4 66 50.0
CAN.G1690.1 Capsicum annuum HOM05D009044 ORTHO05D011261 2.8e-11 74.7 73 42.5
CAN.G577.5 Capsicum annuum HOM05D009044 ORTHO05D011261 2.8e-11 74.7 73 42.5
CAN.G78.3 Capsicum annuum HOM05D009044 ORTHO05D011261 2.8e-11 74.7 73 42.5
arahy.Tifrunner.gnm1.ann1.ES8831 Arachis hypogaea HOM05D009044 ORTHO05D011261 4.8e-11 73.9 105 40.0
arahy.Tifrunner.gnm1.ann1.P3P6H5 Arachis hypogaea HOM05D009044 ORTHO05D002807 4.8e-11 73.9 105 40.0
CAN.G131.12 Capsicum annuum HOM05D009044 ORTHO05D011261 1.1e-10 72.8 78 38.5
Nitab4.5_0000859g0090 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.1e-10 72.8 53 73.6
Migut.E01132 Erythranthe guttata HOM05D009044 ORTHO05D011261 1.4e-10 72.4 67 44.8
Psat4g178280 Pisum sativum HOM05D009044 ORTHO05D011261 3.1e-10 71.2 71 45.1
Nitab4.5_0000859g0080 Nicotiana tabacum HOM05D000540 ORTHO05D008899 4.0e-10 70.9 45 82.2
Nitab4.5_0012260g0010 Nicotiana tabacum HOM05D009044 ORTHO05D011261 6.9e-10 70.1 64 45.3
TPR.G21718 Trifolium pratense HOM05D008280 ORTHO05D010492 6.9e-10 70.1 123 34.1
CAN.G584.15 Capsicum annuum HOM05D009044 ORTHO05D011261 2.6e-09 68.2 66 45.5
CAN.G950.5 Capsicum annuum HOM05D009044 ORTHO05D011261 2.6e-09 68.2 66 45.5
Psat6g067520 Pisum sativum HOM05D009044 ORTHO05D011261 3.4e-09 67.8 66 45.5
CAN.G1321.8 Capsicum annuum HOM05D009044 ORTHO05D011261 5.8e-09 67.0 66 45.5
EL10Ac5g11444 Beta vulgaris HOM05D009044 ORTHO05D011261 2.9e-08 64.7 67 44.8
Sopen10g006300 Solanum pennellii HOM05D009044 ORTHO05D011261 4.9e-08 63.9 65 41.5
PGSC0003DMG402022238 Solanum tuberosum HOM05D009044 ORTHO05D011261 4.9e-08 63.9 65 41.5
CAN.G1082.4 Capsicum annuum HOM05D009044 ORTHO05D011261 1.9e-07 62.0 66 42.4
Phvul.007G104600 Phaseolus vulgaris HOM05D007194 ORTHO05D009182 1.2e-06 59.3 46 69.6
Sopen11g014330 Solanum pennellii HOM05D000743 ORTHO05D000580 1.2e-06 59.3 65 40.0
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 2.7e-06 58.2 48 50.0
Nitab4.5_0004471g0160 Nicotiana tabacum HOM05D009044 ORTHO05D011261 2.7e-06 58.2 57 43.9
Psat0s922g0200 Pisum sativum HOM05D014813 ORTHO05D011261 4.6e-06 57.4 52 46.2
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 7.9e-06 56.6 48 47.9


User provided reference genes

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