Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g027310 Amaranthus hybridus HOM05D002578 ORTHO05D002698 5.1e-41 170.6 86 100.0
Ah.10g029000 Amaranthus hybridus HOM05D002578 ORTHO05D002698 2.8e-39 164.9 83 98.8
Ah.10g027440 Amaranthus hybridus HOM05D002578 ORTHO05D005154 1.1e-38 162.9 83 97.6
Nn070s42374 Nelumbo nucifera HOM05D002578 ORTHO05D002698 9.1e-22 106.7 74 71.6
PSO548G0035 Papaver somniferum HOM05D002578 ORTHO05D002698 9.1e-22 106.7 60 86.7
Gohir.1Z049734 Gossypium hirsutum HOM05D002578 ORTHO05D002698 2.0e-21 105.5 63 81.0
Gorai.009G325200 Gossypium raimondii HOM05D002578 ORTHO05D002698 2.0e-21 105.5 63 81.0
Peaxi162Scf00299g00118 Petunia axillaris HOM05D002578 ORTHO05D005154 2.0e-21 105.5 63 82.5
Solyc00g500034.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 2.0e-21 105.5 63 82.5
Hma1.2p1_0104F.1_g050125 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 2.7e-21 105.1 60 86.7
Hma1.2p1_0192F.1_g083740 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 2.7e-21 105.1 60 86.7
Hma1.2p1_0247F.1_g101834 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 2.7e-21 105.1 60 86.7
Hma1.2p1_0298F.1_g117736 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 2.7e-21 105.1 60 86.7
Hma1.2p1_0818F.1_g223301 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 2.7e-21 105.1 60 86.7
ATCG00810 Arabidopsis thaliana HOM05D002578 ORTHO05D002698 4.5e-21 104.4 61 83.6
HanXRQChr00c0593g0576411 Helianthus annuus HOM05D002578 ORTHO05D002698 4.5e-21 104.4 63 82.5
HanXRQChr01g0020181 Helianthus annuus HOM05D002578 ORTHO05D005154 4.5e-21 104.4 63 82.5
HanXRQChr04g0127451 Helianthus annuus HOM05D002578 ORTHO05D005154 4.5e-21 104.4 63 82.5
HanXRQChr05g0152531 Helianthus annuus HOM05D002578 ORTHO05D002698 4.5e-21 104.4 63 82.5
HanXRQChr10g0284421 Helianthus annuus HOM05D002578 ORTHO05D005154 4.5e-21 104.4 63 82.5
HanXRQChr11g0321141 Helianthus annuus HOM05D002578 ORTHO05D002698 4.5e-21 104.4 63 82.5
HanXRQChr11g0327011 Helianthus annuus HOM05D002578 ORTHO05D002698 4.5e-21 104.4 63 82.5
HanXRQChr12g0369891 Helianthus annuus HOM05D002578 ORTHO05D005154 4.5e-21 104.4 63 82.5
HanXRQCPg0580221 Helianthus annuus HOM05D002578 ORTHO05D005154 4.5e-21 104.4 63 82.5
Lsat_1_v5_gn_3_113300 Lactuca sativa HOM05D002578 ORTHO05D005154 4.5e-21 104.4 63 82.5
Lsat_1_v5_gn_3_22620 Lactuca sativa HOM05D002578 ORTHO05D005154 4.5e-21 104.4 63 82.5
Gohir.D01G102177 Gossypium hirsutum HOM05D002578 ORTHO05D002698 5.9e-21 104.0 63 79.4
HanXRQChr16g0500141 Helianthus annuus HOM05D002578 ORTHO05D002698 5.9e-21 104.0 60 86.7
CAN.G114.8 Capsicum annuum HOM05D002578 ORTHO05D002698 7.7e-21 103.6 63 81.0
AL2G20520 Arabidopsis lyrata HOM05D002578 ORTHO05D002698 1.0e-20 103.2 73 74.0
AL2G21760 Arabidopsis lyrata HOM05D002578 ORTHO05D002698 1.0e-20 103.2 73 74.0
Oeu060398.1 Olea europaea HOM05D002578 ORTHO05D002698 1.0e-20 103.2 63 81.0
PGR111G0094 Punica granatum HOM05D002578 ORTHO05D002698 1.0e-20 103.2 60 86.7
SGA_v2.0_scaffold907G53717 Striga asiatica HOM05D002578 ORTHO05D002698 1.0e-20 103.2 68 75.0
BolSC35t60673H Brassica oleracea HOM05D002578 ORTHO05D002698 1.3e-20 102.8 56 89.3
Lsat_1_v5_gn_5_50481 Lactuca sativa HOM05D002578 ORTHO05D002698 1.3e-20 102.8 63 81.0
Gohir.1Z049366 Gossypium hirsutum HOM05D002578 ORTHO05D002698 1.7e-20 102.4 63 77.8
C09p40110 Brassica napus HOM05D002578 ORTHO05D002698 2.9e-20 101.7 56 87.5
BolC9t56906H Brassica oleracea HOM05D002578 ORTHO05D002698 2.9e-20 101.7 56 87.5
Gohir.A12G024432 Gossypium hirsutum HOM05D002578 ORTHO05D002698 2.9e-20 101.7 63 79.4
DCAR_032525 Daucus carota HOM05D002578 ORTHO05D002698 3.8e-20 101.3 60 81.7
Sed0005264 Sechium edule HOM05D002578 ORTHO05D002698 3.8e-20 101.3 75 66.7
RcHm_v2.0_CPg0501841 Rosa chinensis HOM05D002578 ORTHO05D002698 6.5e-20 100.5 75 66.7
Nitab4.5_0004697g0040 Nicotiana tabacum HOM05D002578 ORTHO05D002698 8.5e-20 100.1 63 79.4
AL1G45060 Arabidopsis lyrata HOM05D002578 ORTHO05D002698 1.1e-19 99.8 73 71.2
Nitab4.5_0004430g0050 Nicotiana tabacum HOM05D002578 ORTHO05D002698 1.9e-19 99.0 68 73.5
Ciclev10005921m.g Citrus clementina HOM05D002578 ORTHO05D002698 3.2e-19 98.2 66 72.7
RcHm_v2.0_Chr1g0329561 Rosa chinensis HOM05D002578 ORTHO05D002698 3.2e-19 98.2 75 64.0
FAN09G4709 Fragaria x ananassa HOM05D002578 ORTHO05D002698 5.5e-19 97.4 67 71.6
BolSC29t60613H Brassica oleracea HOM05D002578 ORTHO05D002698 1.2e-18 96.3 51 90.2
Oeu054717.1 Olea europaea HOM05D002578 ORTHO05D002698 1.2e-18 96.3 63 76.2
HanXRQChr10g0318021 Helianthus annuus HOM05D002578 ORTHO05D005154 1.6e-18 95.9 50 94.0
Phvul.004G001400 Phaseolus vulgaris HOM05D002578 ORTHO05D002698 3.6e-18 94.7 73 67.1
Lj2P1239T81 Lonicera japonica HOM05D002578 ORTHO05D002698 4.7e-18 94.4 49 93.9
Lju5009P0T59 Lonicera japonica HOM05D002578 ORTHO05D002698 4.7e-18 94.4 49 93.9
Nitab4.5_0000382g0100 Nicotiana tabacum HOM05D002578 ORTHO05D002698 4.7e-18 94.4 63 74.6
BolC7t41707H Brassica oleracea HOM05D002578 ORTHO05D002698 6.1e-18 94.0 51 88.2
TPR.G22135 Trifolium pratense HOM05D002578 ORTHO05D002698 1.0e-17 93.2 60 76.7
Nitab4.5_0013360g0010 Nicotiana tabacum HOM05D002578 ORTHO05D005154 1.4e-17 92.8 50 88.0
Sc25g0002070 Simmondsia chinensis HOM05D002578 ORTHO05D005154 1.4e-17 92.8 72 66.7
Cfa007862 Carpinus fangiana HOM05D002578 ORTHO05D002698 2.3e-17 92.0 70 72.9
Glyma.05G001100 Glycine max HOM05D002578 ORTHO05D002698 2.3e-17 92.0 73 64.4
HanXRQChr16g0503671 Helianthus annuus HOM05D002578 ORTHO05D002698 2.3e-17 92.0 63 73.0
Atru.chr11.440 Acer truncatum HOM05D002578 ORTHO05D005154 3.0e-17 91.7 74 66.2
Lj2g0018876 Lotus japonicus HOM05D002578 ORTHO05D002698 5.2e-17 90.9 60 75.0
QL02p048586 Quercus lobata HOM05D002578 ORTHO05D002698 5.2e-17 90.9 60 76.7
VMungo0464G0334 Vigna mungo HOM05D002578 ORTHO05D002698 5.2e-17 90.9 71 64.8
arahy.Tifrunner.gnm1.ann1.900JYR Arachis hypogaea HOM05D002578 ORTHO05D002698 6.8e-17 90.5 60 75.0
arahy.Tifrunner.gnm1.ann1.MT7PBJ Arachis hypogaea HOM05D002578 ORTHO05D002698 6.8e-17 90.5 60 75.0
Ca_04123_v3 Cicer arietinum L. HOM05D002578 ORTHO05D002698 8.8e-17 90.1 60 75.0
Lalb_Chr03g0038431 Lupinus albus HOM05D002578 ORTHO05D002698 8.8e-17 90.1 60 71.7
Glyma.19G001100 Glycine max HOM05D002578 ORTHO05D002698 1.2e-16 89.7 73 63.0
ClCG04G000500 Citrullus lanatus HOM05D002578 ORTHO05D002698 1.5e-16 89.4 50 86.0
Lj1g0008959 Lotus japonicus HOM05D002578 ORTHO05D002698 3.4e-16 88.2 60 71.7
Medtr7g100410 Medicago truncatula HOM05D002578 ORTHO05D002698 3.4e-16 88.2 72 66.7
Psat1g052200 Pisum sativum HOM05D002578 ORTHO05D002698 3.4e-16 88.2 60 70.0
CiPaw.03G067300 Carya illinoinensis HOM05D002578 ORTHO05D002698 4.4e-16 87.8 55 78.2
Lj2C1234G17 Lonicera japonica HOM05D002578 ORTHO05D002698 4.4e-16 87.8 50 86.0
Gorai.001G190500 Gossypium raimondii HOM05D002578 ORTHO05D002698 7.5e-16 87.0 51 82.4
MBI12_g26681_MAGBIO Magnolia biondii HOM05D002578 ORTHO05D009557 1.7e-15 85.9 59 66.1
HPP92_007212 Vanilla planifolia HOM05D002578 ORTHO05D002698 3.7e-15 84.7 57 75.4
Zm00001eb437150 Zea mays HOM05D002578 ORTHO05D002698 1.6e-13 79.3 68 58.8
Zm00001eb435110 Zea mays HOM05D002578 ORTHO05D002698 3.5e-13 78.2 64 60.9
Zm00001eb442200 Zea mays HOM05D002578 ORTHO05D002698 4.5e-13 77.8 55 69.1
Nn4g25227 Nelumbo nucifera HOM05D002578 ORTHO05D002698 1.7e-12 75.9 74 56.8
RcHm_v2.0_Chr6g0286361 Rosa chinensis HOM05D002578 ORTHO05D002698 1.7e-12 75.9 58 65.5
Hund29685 Selenicereus undatus HOM05D002578 ORTHO05D009557 6.6e-12 73.9 56 64.3
Hund30542 Selenicereus undatus HOM05D002578 ORTHO05D009557 6.6e-12 73.9 56 64.3
Hund31295 Selenicereus undatus HOM05D002578 ORTHO05D009557 6.6e-12 73.9 56 64.3
Cre13.g580850 Chlamydomonas reinhardtii HOM05D002578 ORTHO05D002698 2.5e-11 72.0 73 56.2
HanXRQChr00c0394g0574521 Helianthus annuus HOM05D002578 ORTHO05D002698 2.5e-11 72.0 48 77.1
Migut.D01326 Erythranthe guttata HOM05D002578 ORTHO05D002698 3.3e-11 71.6 60 65.0
MCO09G075 Micromonas commoda HOM05D002578 ORTHO05D002698 4.2e-11 71.2 66 51.5
SMO086G0008 Selaginella moellendorffii HOM05D002578 ORTHO05D002698 5.5e-11 70.9 63 57.1
Os12g0488300 Oryza sativa ssp. japonica HOM05D002578 ORTHO05D002698 1.2e-10 69.7 57 61.4
RcHm_v2.0_Chr5g0025841 Rosa chinensis HOM05D002578 ORTHO05D002698 1.2e-10 69.7 44 75.0
Solyc09g050066.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 2.1e-10 68.9 56 62.5
Nitab4.5_0004376g0170 Nicotiana tabacum HOM05D002578 ORTHO05D009557 2.8e-10 68.6 38 86.8
Gohir.A04G116550 Gossypium hirsutum HOM05D002578 ORTHO05D002698 3.0e-09 65.1 39 74.4
Solyc12g035880.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 6.8e-09 63.9 44 65.9
Lsat_1_v5_gn_5_168080 Lactuca sativa HOM05D002578 ORTHO05D002698 1.2e-08 63.2 63 60.3
HanXRQChr00c0349g0573961 Helianthus annuus HOM05D002578 ORTHO05D002698 6.3e-07 57.4 28 92.9
CARHR141570 Cardamine hirsuta HOM05D002578 ORTHO05D002698 3.1e-06 55.1 33 75.8
CiPaw.11G073000 Carya illinoinensis HOM05D002578 ORTHO05D002698 3.1e-06 55.1 33 69.7
Peaxi162Scf00362g00547 Petunia axillaris HOM05D002578 ORTHO05D002698 9.2e-06 53.5 28 85.7


User provided reference genes

Program Settings