Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g236860 Amaranthus hybridus HOM05D004883 ORTHO05D005766 1.2e-65 253.1 126 100.0
AUR62012534 Chenopodium quinoa HOM05D004883 ORTHO05D005766 6.6e-61 237.3 126 92.9
EL10Ac8g19960 Beta vulgaris HOM05D004883 ORTHO05D005766 8.6e-61 236.9 126 92.9
AUR62014661 Chenopodium quinoa HOM05D004883 ORTHO05D005766 8.6e-61 236.9 126 92.9
AUR62044174 Chenopodium quinoa HOM05D004883 ORTHO05D005766 8.6e-61 236.9 126 92.9
Hund21302 Selenicereus undatus HOM05D004883 ORTHO05D005766 2.8e-59 231.9 125 88.8
Sc02g0007090 Simmondsia chinensis HOM05D004883 ORTHO05D005766 9.8e-57 223.4 122 88.5
Rhsim07G0228400 Rhododendron simsii HOM05D004883 ORTHO05D005766 7.0e-55 217.2 123 83.7
vmacro04449 Vaccinium macrocarpon HOM05D004883 ORTHO05D005766 7.0e-55 217.2 123 84.6
Cpa.g.sc49.21 Carica papaya HOM05D004883 ORTHO05D005766 9.2e-55 216.9 120 85.0
Haze_17525 Corylus avellana HOM05D004883 ORTHO05D005766 1.6e-54 216.1 126 82.5
Glyma.17G242300 Glycine max HOM05D004883 ORTHO05D005766 1.6e-54 216.1 126 80.2
Prupe.1G435500 Prunus persica HOM05D004883 ORTHO05D005766 2.0e-54 215.7 126 82.5
Hma1.2p1_0982F.1_g244010 Hydrangea macrophylla HOM05D004883 ORTHO05D005766 2.7e-54 215.3 126 81.7
arahy.Tifrunner.gnm1.ann1.09A9GY Arachis hypogaea HOM05D004883 ORTHO05D005766 3.5e-54 214.9 126 81.0
arahy.Tifrunner.gnm1.ann1.B0E7W8 Arachis hypogaea HOM05D004883 ORTHO05D005766 3.5e-54 214.9 126 81.0
Dinv35960 Davidia involucrata HOM05D004883 ORTHO05D005766 3.5e-54 214.9 123 82.1
Glyma.14G082800 Glycine max HOM05D004883 ORTHO05D005766 5.9e-54 214.2 126 78.6
PGR031G0707 Punica granatum HOM05D004883 ORTHO05D005766 1.0e-53 213.4 120 82.5
GSVIVG01009495001 Vitis vinifera HOM05D004883 ORTHO05D005766 1.0e-53 213.4 123 82.1
QL02p004805 Quercus lobata HOM05D004883 ORTHO05D005766 1.7e-53 212.6 122 80.3
TAR381G1103 Trochodendron aralioides HOM05D004883 ORTHO05D005766 1.7e-53 212.6 123 82.1
Phvul.001G022000 Phaseolus vulgaris HOM05D004883 ORTHO05D005766 3.9e-53 211.5 126 79.4
Ciclev10002854m.g Citrus clementina HOM05D004883 ORTHO05D005766 6.6e-53 210.7 126 79.4
FAN20G2534 Fragaria x ananassa HOM05D004883 ORTHO05D005766 6.6e-53 210.7 123 82.9
Atru.chr13.693 Acer truncatum HOM05D004883 ORTHO05D005766 1.1e-52 209.9 123 82.1
Cc10_g04160 Coffea canephora HOM05D004883 ORTHO05D005766 1.1e-52 209.9 124 83.9
VMungo0647G0758 Vigna mungo HOM05D004883 ORTHO05D005766 1.5e-52 209.5 126 80.2
CiPaw.16G043800 Carya illinoinensis HOM05D004883 ORTHO05D005766 1.9e-52 209.1 126 78.6
Sopen04g032520 Solanum pennellii HOM05D004883 ORTHO05D005766 1.9e-52 209.1 126 77.8
FvH4_2g34441 Fragaria vesca HOM05D004883 ORTHO05D005766 2.5e-52 208.8 123 81.3
FAN27G2225 Fragaria x ananassa HOM05D004883 ORTHO05D005766 2.5e-52 208.8 122 82.0
Actinidia38058 Actinidia chinensis HOM05D004883 ORTHO05D005766 3.3e-52 208.4 120 81.7
Solyc04g078920.3 Solanum lycopersicum HOM05D004883 ORTHO05D005766 5.6e-52 207.6 126 77.8
PGSC0003DMG400007973 Solanum tuberosum HOM05D004883 ORTHO05D005766 5.6e-52 207.6 126 77.0
COL.COLO4_26509 Corchorus olitorius HOM05D004883 ORTHO05D005766 7.3e-52 207.2 123 81.3
Lsat_1_v5_gn_4_125820 Lactuca sativa HOM05D004883 ORTHO05D005766 7.3e-52 207.2 123 80.5
CSS0025959 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 9.5e-52 206.8 122 81.1
CSS0031938 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 9.5e-52 206.8 122 81.1
ECA232G2590 Erigeron canadensis HOM05D004883 ORTHO05D005766 1.2e-51 206.5 126 81.0
MD08G1101600 Malus domestica HOM05D004883 ORTHO05D005766 1.2e-51 206.5 123 81.3
MD15G1083000 Malus domestica HOM05D004883 ORTHO05D005766 1.2e-51 206.5 123 80.5
Lsat_1_v5_gn_6_112040 Lactuca sativa HOM05D004883 ORTHO05D005766 2.1e-51 205.7 122 79.5
Gorai.009G211700 Gossypium raimondii HOM05D004883 ORTHO05D005766 2.8e-51 205.3 123 79.7
Lj5g0012185 Lotus japonicus HOM05D004883 ORTHO05D005766 2.8e-51 205.3 122 78.7
TPR.G3781 Trifolium pratense HOM05D004883 ORTHO05D005766 2.8e-51 205.3 126 77.0
Gohir.D05G205400 Gossypium hirsutum HOM05D004883 ORTHO05D005766 3.6e-51 204.9 123 79.7
Hund23571 Selenicereus undatus HOM05D004883 ORTHO05D005766 4.7e-51 204.5 126 77.0
AT5G42890 Arabidopsis thaliana HOM05D004883 ORTHO05D005766 8.0e-51 203.8 123 77.2
HanXRQChr05g0150871 Helianthus annuus HOM05D004883 ORTHO05D005766 8.0e-51 203.8 123 78.9
Peaxi162Scf00010g00308 Petunia axillaris HOM05D004883 ORTHO05D005766 8.0e-51 203.8 126 76.2
Thecc.08G007300 Theobroma cacao HOM05D004883 ORTHO05D005766 8.0e-51 203.8 123 78.9
RcHm_v2.0_Chr6g0307931 Rosa chinensis HOM05D004883 ORTHO05D005766 1.0e-50 203.4 123 79.7
CsaV3_4G034310 Cucumis sativus L. HOM05D004883 ORTHO05D005766 1.4e-50 203.0 123 78.9
Migut.N02708 Erythranthe guttata HOM05D004883 ORTHO05D005766 1.4e-50 203.0 123 78.9
SalBow7G2082 Salvia bowleyana HOM05D004883 ORTHO05D005766 1.8e-50 202.6 120 80.0
Gohir.D01G108200 Gossypium hirsutum HOM05D004883 ORTHO05D005766 2.3e-50 202.2 119 80.7
Lalb_Chr22g0355131 Lupinus albus HOM05D004883 ORTHO05D005766 2.3e-50 202.2 123 76.4
AL8G18060 Arabidopsis lyrata HOM05D004883 ORTHO05D005766 3.1e-50 201.8 123 76.4
Thhalv10003291m.g Eutrema salsugineum HOM05D004883 ORTHO05D005766 3.1e-50 201.8 119 79.0
BcaC04g21964 Brassica carinata HOM05D004883 ORTHO05D005766 4.0e-50 201.4 120 78.3
A09p20040 Brassica napus HOM05D004883 ORTHO05D005766 4.0e-50 201.4 120 78.3
C09p25420 Brassica napus HOM05D004883 ORTHO05D005766 4.0e-50 201.4 120 78.3
BolC9t55441H Brassica oleracea HOM05D004883 ORTHO05D005766 4.0e-50 201.4 120 78.3
BraA09t37617Z Brassica rapa HOM05D004883 ORTHO05D005766 4.0e-50 201.4 120 78.3
ClCG05G019880 Citrullus lanatus HOM05D004883 ORTHO05D005766 4.0e-50 201.4 123 77.2
Gohir.D06G016900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 4.0e-50 201.4 120 81.7
Gorai.010G019800 Gossypium raimondii HOM05D004883 ORTHO05D005766 4.0e-50 201.4 120 81.7
HanXRQChr14g0439621 Helianthus annuus HOM05D004883 ORTHO05D005766 4.0e-50 201.4 123 77.2
THA.LOC104822849 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 4.0e-50 201.4 120 78.3
MSTRG.1348 Avicennia marina HOM05D004883 ORTHO05D005766 6.8e-50 200.7 119 79.8
BcaB07g31037 Brassica carinata HOM05D004883 ORTHO05D005766 6.8e-50 200.7 120 77.5
Carub.0008s0602 Capsella rubella HOM05D004883 ORTHO05D005766 6.8e-50 200.7 120 77.5
Medtr1g019430 Medicago truncatula HOM05D004883 ORTHO05D005766 6.8e-50 200.7 126 74.6
BcaC06g31741 Brassica carinata HOM05D004883 ORTHO05D005766 8.9e-50 200.3 120 77.5
Gorai.002G132400 Gossypium raimondii HOM05D004883 ORTHO05D005766 8.9e-50 200.3 120 80.0
SalBow3G1199 Salvia bowleyana HOM05D004883 ORTHO05D005766 8.9e-50 200.3 120 80.0
Gohir.A01G119900 Gossypium hirsutum HOM05D004883 ORTHO05D005766 1.5e-49 199.5 120 79.2
Sp2g07620 Schrenkiella parvula HOM05D004883 ORTHO05D005766 1.5e-49 199.5 119 78.2
Oeu057282.1 Olea europaea HOM05D004883 ORTHO05D005766 2.0e-49 199.1 123 74.8
Psat1g147680 Pisum sativum HOM05D004883 ORTHO05D005766 2.0e-49 199.1 122 75.4
Sed0005554 Sechium edule HOM05D004883 ORTHO05D005766 2.0e-49 199.1 123 77.2
Ca_13291_v3 Cicer arietinum L. HOM05D004883 ORTHO05D005766 3.4e-49 198.4 126 74.6
Eucgr.F02346 Eucalyptus grandis HOM05D004883 ORTHO05D005766 3.4e-49 198.4 154 66.2
Migut.C00579 Erythranthe guttata HOM05D004883 ORTHO05D005766 9.8e-49 196.8 120 76.7
Nn1g04858 Nelumbo nucifera HOM05D004883 ORTHO05D005766 9.8e-49 196.8 123 78.9
DCAR_020929 Daucus carota HOM05D004883 ORTHO05D005766 1.3e-48 196.4 123 76.4
DCAR_012777 Daucus carota HOM05D004883 ORTHO05D005766 1.7e-48 196.1 119 79.8
ECA246G2602 Erigeron canadensis HOM05D004883 ORTHO05D005766 1.7e-48 196.1 123 76.4
Oeu044836.1 Olea europaea HOM05D004883 ORTHO05D005766 2.2e-48 195.7 123 74.0
CARHR181250 Cardamine hirsuta HOM05D004883 ORTHO05D005766 3.7e-48 194.9 120 75.8
MELO3C016751.2 Cucumis melo HOM05D004883 ORTHO05D005766 4.9e-48 194.5 129 73.6
Duzib093G0126 Durio zibethinus HOM05D004883 ORTHO05D005766 4.9e-48 194.5 110 83.6
THA.LOC104814168 Tarenaya hassleriana HOM05D004883 ORTHO05D005766 6.4e-48 194.1 120 75.0
Aa31LG9G12950 Aethionema arabicum HOM05D004883 ORTHO05D005766 8.3e-48 193.7 120 76.7
CDE08G1634 Ceratophyllum demersum HOM05D004883 ORTHO05D005766 1.1e-47 193.4 120 78.3
FvH4_2g34440 Fragaria vesca HOM05D004883 ORTHO05D005766 1.1e-47 193.4 123 75.6
Gohir.A05G202300 Gossypium hirsutum HOM05D004883 ORTHO05D005766 5.4e-47 191.0 109 82.6
PSO210G0389 Papaver somniferum HOM05D004883 ORTHO05D005766 1.2e-46 189.9 123 74.8
PSO170G5588 Papaver somniferum HOM05D004883 ORTHO05D005766 1.6e-46 189.5 123 74.8
ATR1102G009 Amborella trichopoda HOM05D004883 ORTHO05D005766 6.0e-46 187.6 126 73.0
Os06g0211300 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 2.3e-45 185.7 119 75.6
Aqoxy5G01236 Aquilegia oxysepala HOM05D004883 ORTHO05D005766 6.6e-45 184.1 123 74.0
TWI36G0538 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 1.1e-44 183.3 123 73.2
Duzib041G0234 Durio zibethinus HOM05D004883 ORTHO05D005766 3.3e-44 181.8 123 74.0
Sabra02G0098900 Salix brachista HOM05D004883 ORTHO05D005766 1.2e-43 179.9 120 70.0
TWI56G0859 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 1.2e-43 179.9 123 70.7
TWI56G0476 Tripterygium wilfordii HOM05D004883 ORTHO05D005766 2.8e-43 178.7 123 70.7
Potri.002G126200 Populus trichocarpa HOM05D004883 ORTHO05D005766 4.7e-43 177.9 120 69.2
Manes.05G174000 Manihot esculenta HOM05D004883 ORTHO05D005766 8.1e-43 177.2 119 68.9
Nitab4.5_0000287g0320 Nicotiana tabacum HOM05D004883 ORTHO05D005766 8.1e-43 177.2 126 70.6
Nitab4.5_0003118g0020 Nicotiana tabacum HOM05D004883 ORTHO05D005766 8.1e-43 177.2 126 70.6
Os02g0765800 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 1.5e-41 172.9 119 68.9
MBI06_g02552_MAGBIO Magnolia biondii HOM05D004883 ORTHO05D005766 2.0e-41 172.6 122 72.1
SEGI_37934 Sequoiadendron giganteum HOM05D004883 ORTHO05D005766 4.4e-41 171.4 123 65.9
Pp3c24_4700 Physcomitrium patens HOM05D004883 ORTHO05D005766 5.8e-41 171.0 120 70.8
CSS0006435 Camellia sinensis var. sinensis HOM05D004883 ORTHO05D005766 3.7e-40 168.3 121 68.6
Potri.014G029300 Populus trichocarpa HOM05D004883 ORTHO05D005766 6.4e-40 167.5 120 65.0
Sabra14G0020100 Salix brachista HOM05D004883 ORTHO05D005766 2.4e-39 165.6 120 64.2
Mapoly0033s0053 Marchantia polymorpha HOM05D004883 ORTHO05D005766 3.2e-39 165.2 119 65.5
MD00G1215600 Malus domestica HOM05D004883 ORTHO05D005766 1.6e-38 162.9 97 79.4
C03p39670 Brassica napus HOM05D004883 ORTHO05D005766 3.0e-37 158.7 107 72.0
SMO169G0122 Selaginella moellendorffii HOM05D004883 ORTHO05D005766 6.6e-37 157.5 120 63.3
HPP92_013338 Vanilla planifolia HOM05D004883 ORTHO05D005766 2.5e-36 155.6 119 68.1
Manes.18G037300 Manihot esculenta HOM05D004883 ORTHO05D005766 4.3e-36 154.8 120 61.7
TAR625G0321 Trochodendron aralioides HOM05D004883 ORTHO05D005766 1.6e-35 152.9 95 76.8
BcaC09g50201 Brassica carinata HOM05D004883 ORTHO05D005766 2.1e-35 152.5 110 65.5
EL10Ac4g09184 Beta vulgaris HOM05D004883 ORTHO05D005766 4.7e-35 151.4 121 68.6
FAN15G1199 Fragaria x ananassa HOM05D004883 ORTHO05D005766 2.6e-33 145.6 83 81.9
Peaxi162Scf00252g00711 Petunia axillaris HOM05D004883 ORTHO05D005766 1.1e-31 140.2 126 58.7
CANSAT35G0766 Cannabis sativa HOM05D004883 ORTHO05D005766 5.4e-31 137.9 116 53.4
EL10Ac7g17187 Beta vulgaris HOM05D004883 ORTHO05D005766 1.3e-29 133.3 83 80.7
CAN.G1139.16 Capsicum annuum HOM05D004883 ORTHO05D005766 1.6e-27 126.3 91 64.8
CAN.G371.3 Capsicum annuum HOM05D004883 ORTHO05D005766 1.2e-25 120.2 124 54.8
AagrBONN_evm.TU.Sc2ySwM_344.1976 Anthoceros agrestis HOM05D004883 ORTHO05D005766 2.6e-25 119.0 125 48.8
BcaC01g04518 Brassica carinata HOM05D004883 ORTHO05D005766 1.3e-24 116.7 82 70.7
Nn5g30317 Nelumbo nucifera HOM05D004883 ORTHO05D005766 1.7e-24 116.3 119 55.5
Gohir.A06G018633 Gossypium hirsutum HOM05D004883 ORTHO05D005766 8.4e-24 114.0 95 62.1
Actinidia29871 Actinidia chinensis HOM05D004883 ORTHO05D005766 1.1e-23 113.6 62 83.9
BolC9t59992H Brassica oleracea HOM05D004883 ORTHO05D005766 1.6e-22 109.8 100 56.0
BolC1t02723H Brassica oleracea HOM05D004883 ORTHO05D005766 1.0e-21 107.1 69 72.5
Lj4A58G20 Lonicera japonica HOM05D000983 ORTHO05D005766 3.0e-21 105.5 60 76.7
Os01g0357200 Oryza sativa ssp. japonica HOM05D004883 ORTHO05D005766 3.0e-21 105.5 83 63.9
RcHm_v2.0_Chr5g0032801 Rosa chinensis HOM05D004883 ORTHO05D005766 1.6e-19 99.8 94 60.6
unitig_32.g11126 Utricularia gibba HOM05D004883 ORTHO05D005766 1.9e-15 86.3 57 68.4
C01p27920 Brassica napus HOM05D004883 ORTHO05D005766 4.6e-14 81.6 103 47.6
C09p72490 Brassica napus HOM05D004883 ORTHO05D005766 1.4e-10 70.1 47 70.2
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 1.3e-08 63.5 109 37.6
MELO3C033382.2 Cucumis melo HOM05D004883 ORTHO05D005766 2.2e-08 62.8 35 80.0
PRCOL_00003255 Prasinoderma coloniale HOM05D004883 ORTHO05D005766 5.5e-07 58.2 116 31.0
Cre14.g633550 Chlamydomonas reinhardtii HOM05D004883 ORTHO05D005766 2.7e-06 55.8 111 30.6


User provided reference genes

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