Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g235140 Amaranthus hybridus HOM05D005787 ORTHO05D007011 3.1e-300 1034.2 494 100.0
AUR62021984 Chenopodium quinoa HOM05D005787 ORTHO05D007011 8.8e-202 707.2 507 69.6
AUR62012670 Chenopodium quinoa HOM05D005787 ORTHO05D007011 5.9e-198 694.5 415 79.0
EL10Ac8g20017 Beta vulgaris HOM05D005787 ORTHO05D007011 5.7e-193 677.9 496 68.8
Hund21388 Selenicereus undatus HOM05D005787 ORTHO05D007011 2.4e-183 646.0 398 73.9
EL10Ac8g20016 Beta vulgaris HOM05D005787 ORTHO05D007011 2.5e-180 636.0 498 61.2
AUR62012669 Chenopodium quinoa HOM05D005787 ORTHO05D007011 7.2e-180 634.4 497 62.4
AUR62021985 Chenopodium quinoa HOM05D005787 ORTHO05D007011 9.4e-180 634.0 497 62.2
Hund21387 Selenicereus undatus HOM05D005787 ORTHO05D007011 6.1e-179 631.3 487 61.8
GSVIVG01012651001 Vitis vinifera HOM05D005787 ORTHO05D007011 5.4e-175 618.2 472 61.2
Dinv20032 Davidia involucrata HOM05D005787 ORTHO05D007011 1.2e-174 617.1 409 68.5
Atru.chr10.2171 Acer truncatum HOM05D005787 ORTHO05D007011 1.0e-173 614.0 413 67.6
Manes.16G010400 Manihot esculenta HOM05D005787 ORTHO05D007011 8.6e-173 610.9 408 68.1
Prupe.4G024200 Prunus persica HOM05D005787 ORTHO05D007011 7.2e-172 607.8 413 66.3
Lj1C1227T21 Lonicera japonica HOM05D005787 ORTHO05D007011 2.8e-171 605.9 471 60.3
Oeu015733.1 Olea europaea HOM05D005787 ORTHO05D007011 6.1e-171 604.7 468 60.0
vmacro15819 Vaccinium macrocarpon HOM05D005787 ORTHO05D007011 6.1e-171 604.7 409 66.3
Actinidia11846 Actinidia chinensis HOM05D005787 ORTHO05D007011 1.0e-170 604.0 488 58.2
Haze_06771 Corylus avellana HOM05D005787 ORTHO05D007011 1.2e-169 600.5 411 65.9
QL05p074231 Quercus lobata HOM05D005787 ORTHO05D007011 1.2e-169 600.5 413 64.9
SalBow1G7047 Salvia bowleyana HOM05D005787 ORTHO05D007011 2.0e-169 599.7 409 66.5
Potri.004G019100 Populus trichocarpa HOM05D005787 ORTHO05D007011 2.6e-169 599.4 413 65.6
CsaV3_1G010950 Cucumis sativus L. HOM05D005787 ORTHO05D007011 3.4e-169 599.0 408 67.2
Ciclev10015055m.g Citrus clementina HOM05D005787 ORTHO05D007011 7.5e-169 597.8 490 58.6
Nn1g07089 Nelumbo nucifera HOM05D005787 ORTHO05D007011 9.8e-169 597.4 409 67.0
TAR624G0905 Trochodendron aralioides HOM05D005787 ORTHO05D007011 2.2e-168 596.3 475 60.0
PGR042G0837 Punica granatum HOM05D005787 ORTHO05D007011 2.8e-168 595.9 408 66.4
Ah.09g235150 Amaranthus hybridus HOM05D005787 ORTHO05D007011 3.7e-168 595.5 493 59.2
Cc09_g01960 Coffea canephora HOM05D005787 ORTHO05D007011 1.8e-167 593.2 451 62.3
Gohir.D05G171800 Gossypium hirsutum HOM05D005787 ORTHO05D007011 1.8e-167 593.2 473 59.6
PGSC0003DMG400002087 Solanum tuberosum HOM05D005787 ORTHO05D007011 1.8e-167 593.2 494 57.9
Rhsim02G0110900 Rhododendron simsii HOM05D005787 ORTHO05D007011 3.1e-167 592.4 409 65.8
Gorai.009G176900 Gossypium raimondii HOM05D005787 ORTHO05D007011 4.1e-167 592.0 473 59.4
Sabra04G0010700 Salix brachista HOM05D005787 ORTHO05D007011 4.1e-167 592.0 408 65.2
CANSAT56G2549 Cannabis sativa HOM05D005787 ORTHO05D007011 5.4e-167 591.7 467 60.2
CsaV3_1G010930 Cucumis sativus L. HOM05D005787 ORTHO05D007011 7.0e-167 591.3 408 66.9
Sed0015393 Sechium edule HOM05D005787 ORTHO05D007011 1.2e-166 590.5 408 66.4
Cpa.g.sc198.22 Carica papaya HOM05D005787 ORTHO05D007011 2.0e-166 589.7 406 65.3
Solyc02g080320.4 Solanum lycopersicum HOM05D005787 ORTHO05D007011 7.8e-166 587.8 504 56.7
Sopen02g025020 Solanum pennellii HOM05D005787 ORTHO05D007011 1.3e-165 587.0 497 58.6
THA.LOC104812988 Tarenaya hassleriana HOM05D005787 ORTHO05D007011 1.3e-165 587.0 409 65.0
Gohir.A05G168600 Gossypium hirsutum HOM05D005787 ORTHO05D007011 1.7e-165 586.6 484 58.3
ClCG03G004890 Citrullus lanatus HOM05D005787 ORTHO05D007011 5.0e-165 585.1 437 62.9
Ca_00626_v3 Cicer arietinum L. HOM05D005787 ORTHO05D007011 6.6e-165 584.7 408 63.0
VMungo0540G0861 Vigna mungo HOM05D005787 ORTHO05D007011 8.6e-165 584.3 408 64.0
CSS0006555 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 1.1e-164 583.9 439 63.1
Eucgr.E04102 Eucalyptus grandis HOM05D005787 ORTHO05D007011 1.9e-164 583.2 410 65.1
Lj6g0006260 Lotus japonicus HOM05D005787 ORTHO05D007011 1.9e-164 583.2 408 64.2
Thecc.06G217000 Theobroma cacao HOM05D005787 ORTHO05D007011 1.9e-164 583.2 471 58.8
TPR.G7642 Trifolium pratense HOM05D005787 ORTHO05D007011 2.5e-164 582.8 413 62.0
TPR.G33224 Trifolium pratense HOM05D005787 ORTHO05D007011 4.3e-164 582.0 469 57.4
Phvul.006G151200 Phaseolus vulgaris HOM05D005787 ORTHO05D007011 7.3e-164 581.3 407 63.1
Migut.H01558 Erythranthe guttata HOM05D005787 ORTHO05D007011 1.2e-163 580.5 411 64.2
Medtr2g022770 Medicago truncatula HOM05D005787 ORTHO05D007011 2.1e-163 579.7 408 62.3
Peaxi162Scf00262g00038 Petunia axillaris HOM05D005787 ORTHO05D007011 2.1e-163 579.7 404 65.8
CAN.G569.24 Capsicum annuum HOM05D005787 ORTHO05D007011 2.8e-163 579.3 406 65.3
Glyma.13G206600 Glycine max HOM05D005787 ORTHO05D007011 2.8e-163 579.3 408 62.7
Medtr7g113450 Medicago truncatula HOM05D005787 ORTHO05D007011 3.6e-163 578.9 464 58.0
Sp7g19940 Schrenkiella parvula HOM05D005787 ORTHO05D007011 3.6e-163 578.9 412 64.1
HanXRQChr01g0003621 Helianthus annuus HOM05D005787 ORTHO05D007011 6.1e-163 578.2 407 63.4
RcHm_v2.0_Chr5g0003731 Rosa chinensis HOM05D005787 ORTHO05D007011 1.0e-162 577.4 413 63.7
MD10G1317600 Malus domestica HOM05D005787 ORTHO05D007011 1.4e-162 577.0 410 64.1
FvH4_3g02480 Fragaria vesca HOM05D005787 ORTHO05D007011 2.3e-162 576.2 413 63.2
arahy.Tifrunner.gnm1.ann1.J4BAYR Arachis hypogaea HOM05D005787 ORTHO05D007011 3.0e-162 575.9 413 62.5
PSO541G2671 Papaver somniferum HOM05D005787 ORTHO05D007011 3.0e-162 575.9 409 63.3
Lalb_Chr18g0056211 Lupinus albus HOM05D005787 ORTHO05D007011 5.2e-162 575.1 407 63.4
Glyma.15G106100 Glycine max HOM05D005787 ORTHO05D007011 6.8e-162 574.7 408 63.2
Lj6g0025395 Lotus japonicus HOM05D005787 ORTHO05D007011 6.8e-162 574.7 408 63.0
FAN25G2524 Fragaria x ananassa HOM05D005787 ORTHO05D007011 8.9e-162 574.3 411 63.0
arahy.Tifrunner.gnm1.ann1.N0U7LY Arachis hypogaea HOM05D005787 ORTHO05D007011 2.0e-161 573.2 413 62.2
Psat0s341g0040 Pisum sativum HOM05D005787 ORTHO05D007011 1.7e-160 570.1 408 61.8
Aqoxy1G03304 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 2.2e-160 569.7 422 63.5
HanXRQChr05g0138101 Helianthus annuus HOM05D005787 ORTHO05D007011 3.7e-160 568.9 410 63.2
BcaC09g51204 Brassica carinata HOM05D005787 ORTHO05D007011 4.9e-160 568.5 412 62.6
Lalb_Chr18g0056221 Lupinus albus HOM05D005787 ORTHO05D007011 4.9e-160 568.5 408 62.7
ECA248G2950 Erigeron canadensis HOM05D005787 ORTHO05D007011 1.4e-159 567.0 405 62.0
BcaNung02245 Brassica carinata HOM05D005787 ORTHO05D007011 2.4e-159 566.2 413 62.5
Nitab4.5_0003893g0010 Nicotiana tabacum HOM05D005787 ORTHO05D007011 4.1e-159 565.5 404 65.1
Aa31LG6G3750 Aethionema arabicum HOM05D005787 ORTHO05D007011 7.0e-159 564.7 410 62.4
A01p13100 Brassica napus HOM05D005787 ORTHO05D007011 9.2e-159 564.3 414 62.6
Psat1g182520 Pisum sativum HOM05D005787 ORTHO05D007011 1.2e-158 563.9 408 61.5
C01p15790 Brassica napus HOM05D005787 ORTHO05D007011 1.6e-158 563.5 414 62.3
BolC1t01532H Brassica oleracea HOM05D005787 ORTHO05D007011 1.6e-158 563.5 414 62.3
SGA_v2.0_scaffold89G27454 Striga asiatica HOM05D005787 ORTHO05D007011 1.6e-158 563.5 411 64.7
AT4G21770 Arabidopsis thaliana HOM05D005787 ORTHO05D007011 2.0e-158 563.1 413 62.5
CARHR228510 Cardamine hirsuta HOM05D005787 ORTHO05D007011 1.0e-157 560.8 412 62.6
AL7G32160 Arabidopsis lyrata HOM05D005787 ORTHO05D007011 1.3e-157 560.5 418 62.2
BraA01t01253Z Brassica rapa HOM05D005787 ORTHO05D007011 1.7e-157 560.1 414 61.6
MELO3C002471.2 Cucumis melo HOM05D005787 ORTHO05D007011 2.3e-157 559.7 413 64.9
Lsat_1_v5_gn_1_122000 Lactuca sativa HOM05D005787 ORTHO05D007011 2.3e-157 559.7 410 63.4
Thhalv10025093m.g Eutrema salsugineum HOM05D005787 ORTHO05D007011 1.1e-156 557.4 452 58.0
ATR0752G095 Amborella trichopoda HOM05D005787 ORTHO05D007011 2.1e-155 553.1 408 62.3
Carub.0007s1963 Capsella rubella HOM05D005787 ORTHO05D007011 1.8e-154 550.1 406 62.8
Lsat_1_v5_gn_1_128660 Lactuca sativa HOM05D005787 ORTHO05D007011 9.2e-151 537.7 411 62.8
DCAR_024937 Daucus carota HOM05D005787 ORTHO05D007011 3.3e-148 529.3 370 65.1
Zm00001eb110780 Zea mays HOM05D005787 ORTHO05D007011 6.2e-147 525.0 409 59.7
MELO3C002473.2 Cucumis melo HOM05D005787 ORTHO05D007011 8.1e-147 524.6 367 66.5
MBI02_g15259_MAGBIO Magnolia biondii HOM05D005787 ORTHO05D007011 3.9e-141 505.8 482 54.8
unitig_0.g957 Utricularia gibba HOM05D005787 ORTHO05D007011 2.5e-140 503.1 369 62.6
Sc05g0009040 Simmondsia chinensis HOM05D005787 ORTHO05D007011 5.6e-140 501.9 308 75.3
ECA248G3226 Erigeron canadensis HOM05D005787 ORTHO05D007011 1.4e-138 497.3 406 58.1
MD10G1317000 Malus domestica HOM05D005787 ORTHO05D007011 1.7e-136 490.3 356 64.3
HPP92_013307 Vanilla planifolia HOM05D005787 ORTHO05D007011 5.4e-135 485.3 365 60.3
CiPaw.09G089100 Carya illinoinensis HOM05D005787 ORTHO05D007011 3.6e-131 472.6 319 66.5
CiPaw.10G069200 Carya illinoinensis HOM05D005787 ORTHO05D007011 9.0e-130 468.0 311 67.5
Mapoly0146s0040 Marchantia polymorpha HOM05D005787 ORTHO05D007011 9.9e-121 438.0 418 50.7
Pp3c5_11180 Physcomitrium patens HOM05D005787 ORTHO05D007011 3.8e-120 436.0 408 52.0
Mapoly0067s0098 Marchantia polymorpha HOM05D005787 ORTHO05D007011 1.0e-117 427.9 418 51.7
SMO200G0166 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 1.2e-110 404.4 416 47.6
Aqoxy92s001 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 1.1e-106 391.3 375 53.3
SMO200G0270 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 6.0e-102 375.6 447 44.5
CSS0044707 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 1.9e-100 370.5 249 68.7
CANSAT64G1034 Cannabis sativa HOM05D005787 ORTHO05D007011 2.2e-96 357.1 250 66.4
SEGI_04414 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 1.4e-85 321.2 255 58.4
DCAR_029795 Daucus carota HOM05D005787 ORTHO05D007011 2.6e-81 307.0 211 66.4
CDE11G0446 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 9.4e-71 271.9 197 60.9
MSTRG.13153 Avicennia marina HOM05D005787 ORTHO05D007011 3.8e-64 250.0 173 63.6
AagrBONN_evm.TU.Sc2ySwM_228.3336 Anthoceros agrestis HOM05D005787 ORTHO05D007011 3.2e-63 246.9 206 56.8
CDE11G0095 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 8.8e-61 238.8 165 68.5
SEGI_19902 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 9.5e-55 218.8 157 66.9
DCAR_029794 Daucus carota HOM05D005787 ORTHO05D007011 2.4e-50 204.1 142 63.4
RcHm_v2.0_Chr5g0003761 Rosa chinensis HOM05D005787 ORTHO05D007011 5.4e-50 203.0 161 60.9
Hma1.2p1_3055F.1_g332150 Hydrangea macrophylla HOM05D005787 ORTHO05D007011 9.2e-42 175.6 129 58.1
MCO11G946 Micromonas commoda HOM05D005787 ORTHO05D007011 2.9e-27 127.5 471 25.9
Cre11.g474850 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 1.3e-24 118.6 383 27.9
BcaC05g26802 Brassica carinata HOM05D005787 ORTHO05D007011 1.4e-21 108.6 86 59.3
MCO10G204 Micromonas commoda HOM05D005787 ORTHO05D007011 1.4e-21 108.6 359 27.3
PRCOL_00006623 Prasinoderma coloniale HOM05D005787 ORTHO05D007011 4.3e-15 87.0 368 26.9
A09p39340 Brassica napus HOM05D005787 ORTHO05D007011 5.4e-10 70.1 54 59.3
A01p18320 Brassica napus HOM05D005787 ORTHO05D007011 2.7e-09 67.8 55 60.0
Cre10.g462600 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 5.1e-08 63.5 119 32.8
C01p29500 Brassica napus HOM05D005787 ORTHO05D042539 1.5e-07 62.0 61 50.8
BolC1t02892H Brassica oleracea HOM05D005787 ORTHO05D042539 1.5e-07 62.0 61 50.8
Os07g0660400 Oryza sativa ssp. japonica HOM05D005787 ORTHO05D007011 9.6e-07 59.3 43 62.8


User provided reference genes

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