Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 9.4e-242 839.7 409 100.0
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 5.7e-231 803.9 409 95.1
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 1.8e-221 772.3 409 90.2
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 5.3e-221 770.8 409 90.7
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 2.2e-219 765.4 409 90.2
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 6.5e-219 763.8 409 89.7
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 5.2e-216 754.2 409 87.8
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 4.4e-215 751.1 407 88.7
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 7.5e-215 750.4 406 87.9
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 7.5e-215 750.4 409 87.0
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.3e-214 749.6 409 87.0
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 2.2e-214 748.8 405 87.7
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 2.8e-214 748.4 409 86.8
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 1.1e-213 746.5 406 87.4
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 2.4e-213 745.3 409 87.3
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 4.1e-213 744.6 409 86.6
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 4.1e-213 744.6 409 86.3
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 4.1e-213 744.6 405 87.7
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 9.1e-213 743.4 409 87.3
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 9.1e-213 743.4 409 86.3
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 1.6e-212 742.7 408 87.5
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 3.5e-212 741.5 406 87.4
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 5.9e-212 740.7 409 86.6
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 7.7e-212 740.3 409 85.8
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 7.7e-212 740.3 409 84.8
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 1.0e-211 740.0 452 80.5
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 1.0e-211 740.0 406 86.9
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 1.0e-211 740.0 408 85.5
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 1.0e-211 740.0 409 86.1
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 1.3e-211 739.6 409 84.6
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 1.7e-211 739.2 409 85.3
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 2.3e-211 738.8 409 85.3
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.9e-211 738.4 406 86.7
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 3.8e-211 738.0 406 86.9
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 3.8e-211 738.0 409 85.3
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 5.0e-211 737.6 409 86.1
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 5.0e-211 737.6 407 86.5
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 5.0e-211 737.6 407 86.7
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 5.0e-211 737.6 409 86.3
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 6.6e-211 737.3 408 85.5
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 6.6e-211 737.3 409 85.6
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 1.1e-210 736.5 408 85.0
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 1.5e-210 736.1 409 85.8
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 1.5e-210 736.1 407 86.7
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.9e-210 735.7 406 86.7
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 2.5e-210 735.3 409 85.8
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 5.5e-210 734.2 409 84.8
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 5.5e-210 734.2 406 86.5
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 7.2e-210 733.8 409 85.3
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 7.2e-210 733.8 409 85.3
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 9.5e-210 733.4 409 85.8
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 1.2e-209 733.0 409 85.8
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 2.1e-209 732.3 409 84.1
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 2.1e-209 732.3 409 84.1
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.1e-209 732.3 406 86.2
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 2.8e-209 731.9 407 85.5
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 3.6e-209 731.5 409 85.6
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 4.7e-209 731.1 407 85.7
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 4.7e-209 731.1 409 85.3
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 6.1e-209 730.7 409 85.6
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 6.1e-209 730.7 409 85.3
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 8.0e-209 730.3 409 85.8
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 8.0e-209 730.3 407 85.5
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 1.0e-208 729.9 409 85.8
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 1.4e-208 729.6 409 85.6
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 1.4e-208 729.6 409 85.3
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 1.8e-208 729.2 409 84.1
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 1.8e-208 729.2 409 84.8
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 2.3e-208 728.8 407 85.3
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 3.0e-208 728.4 409 84.8
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 3.0e-208 728.4 409 84.8
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 3.0e-208 728.4 409 85.3
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 3.0e-208 728.4 409 84.8
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 5.2e-208 727.6 409 84.8
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 5.2e-208 727.6 409 85.3
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 6.8e-208 727.2 409 84.8
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 6.8e-208 727.2 409 84.8
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 6.8e-208 727.2 409 84.8
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 6.8e-208 727.2 409 84.6
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 8.9e-208 726.9 410 84.6
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 8.9e-208 726.9 410 83.4
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 1.2e-207 726.5 410 83.4
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 1.5e-207 726.1 409 84.8
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 2.0e-207 725.7 409 84.8
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 2.6e-207 725.3 409 85.6
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 3.4e-207 724.9 407 85.0
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 3.4e-207 724.9 409 84.8
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 4.4e-207 724.5 406 85.0
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 4.4e-207 724.5 409 84.6
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 5.7e-207 724.2 409 85.1
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 7.5e-207 723.8 411 84.2
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 9.8e-207 723.4 410 84.1
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 9.8e-207 723.4 425 83.1
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 1.3e-206 723.0 421 83.1
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 2.2e-206 722.2 410 84.6
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 2.2e-206 722.2 410 84.6
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 2.8e-206 721.8 410 84.9
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 4.9e-206 721.1 409 83.9
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 6.3e-206 720.7 409 84.8
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 2.4e-205 718.8 406 84.7
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 9.2e-205 716.8 452 78.1
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 1.2e-204 716.5 407 84.3
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 2.7e-204 715.3 451 77.8
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 2.7e-204 715.3 410 83.9
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 7.3e-202 707.2 436 78.9
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 9.5e-202 706.8 409 83.1
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.2e-201 706.4 406 82.3
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 6.1e-201 704.1 476 74.4
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 8.0e-201 703.7 399 84.2
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.2e-199 699.9 406 81.5
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 7.0e-197 690.6 415 80.5
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 9.2e-197 690.3 383 86.2
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 7.8e-196 687.2 380 86.3
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 7.8e-196 687.2 385 84.7
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 1.7e-195 686.0 520 67.5
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 7.3e-194 680.6 410 81.2
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 1.2e-193 679.9 389 84.1
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 8.9e-192 673.7 413 77.5
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 1.9e-189 666.0 358 88.0
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 2.3e-187 659.1 356 87.1
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 2.8e-185 652.1 408 74.5
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 7.5e-183 644.0 402 76.4
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 9.9e-183 643.7 358 85.2
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 1.3e-182 643.3 379 78.9
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 2.7e-180 635.6 409 76.8
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 6.8e-176 620.9 406 75.1
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 2.0e-175 619.4 405 73.3
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 5.8e-175 617.8 404 73.8
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 5.1e-171 604.7 380 74.2
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 9.3e-165 583.9 320 85.3
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 6.6e-163 577.8 400 67.8
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 3.0e-155 552.4 409 69.2
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 5.8e-151 538.1 387 69.5
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 4.5e-143 511.9 400 62.8
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 1.3e-142 510.4 364 69.0
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 1.8e-139 500.0 310 78.7
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 1.7e-126 456.8 245 88.2
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 2.5e-125 453.0 368 61.4
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 3.6e-124 449.1 385 58.7
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 5.1e-123 445.3 258 82.2
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 3.7e-113 412.5 238 81.9
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 1.0e-110 404.4 228 84.6
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 1.2e-106 391.0 239 78.7
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 2.9e-94 349.7 197 84.3
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 1.4e-80 304.3 420 41.9
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 2.2e-73 280.4 183 76.5
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 2.7e-71 273.5 390 42.6
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 2.6e-66 256.9 180 68.3
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 2.4e-64 250.4 141 84.4
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 4.1e-64 249.6 140 85.0
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 2.4e-56 223.8 136 76.5
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 4.6e-47 193.0 104 87.5
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 4.5e-18 96.7 58 70.7
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 1.0e-17 95.5 64 68.8
Lsat_1_v5_gn_9_118621 Lactuca sativa HOM05D006894 ORTHO05D008724 2.0e-13 81.3 335 24.5


User provided reference genes

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