Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g233440 Amaranthus hybridus HOM05D005183 ORTHO05D006684 4.1e-173 611.3 312 100.0
EL10Ac1g00750 Beta vulgaris HOM05D005183 ORTHO05D006684 1.3e-155 553.1 317 87.1
AUR62023398 Chenopodium quinoa HOM05D005183 ORTHO05D006684 2.5e-154 548.9 315 87.0
AUR62013753 Chenopodium quinoa HOM05D005183 ORTHO05D006684 3.3e-154 548.5 315 86.7
Hund17099 Selenicereus undatus HOM05D005183 ORTHO05D006684 1.8e-152 542.7 317 85.5
Hund27408 Selenicereus undatus HOM05D005183 ORTHO05D006684 5.8e-151 537.7 311 85.2
Sc20g0006050 Simmondsia chinensis HOM05D005183 ORTHO05D006684 1.3e-145 520.0 299 83.9
Dinv19828 Davidia involucrata HOM05D005183 ORTHO05D006684 1.3e-137 493.4 305 77.7
Gorai.002G242600 Gossypium raimondii HOM05D005183 ORTHO05D006684 8.1e-137 490.7 313 77.3
Gohir.A01G209300 Gossypium hirsutum HOM05D005183 ORTHO05D006684 4.0e-136 488.4 313 76.7
Gohir.D01G198400 Gossypium hirsutum HOM05D005183 ORTHO05D006684 4.0e-136 488.4 313 77.3
Duzib128G1222 Durio zibethinus HOM05D005183 ORTHO05D006684 6.9e-136 487.6 312 77.2
Ca_06436_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 9.0e-136 487.3 314 76.4
Eucgr.A01543 Eucalyptus grandis HOM05D005183 ORTHO05D006684 9.0e-136 487.3 311 77.2
COL.COLO4_29815 Corchorus olitorius HOM05D005183 ORTHO05D006684 1.2e-135 486.9 312 76.0
Thecc.05G081000 Theobroma cacao HOM05D005183 ORTHO05D006684 1.2e-135 486.9 313 77.3
GSVIVG01033782001 Vitis vinifera HOM05D005183 ORTHO05D006684 2.6e-135 485.7 311 75.6
Lalb_Chr06g0173361 Lupinus albus HOM05D005183 ORTHO05D006684 1.3e-134 483.4 307 76.9
TAR371G0749 Trochodendron aralioides HOM05D005183 ORTHO05D006684 1.7e-134 483.0 315 74.6
Manes.08G020900 Manihot esculenta HOM05D005183 ORTHO05D006684 6.5e-134 481.1 314 74.5
Cpa.g.sc111.25 Carica papaya HOM05D005183 ORTHO05D006684 4.2e-133 478.4 317 75.4
Nn4g24833 Nelumbo nucifera HOM05D005183 ORTHO05D006684 4.2e-133 478.4 315 74.3
PGR004G1465 Punica granatum HOM05D005183 ORTHO05D006684 4.2e-133 478.4 311 75.9
Lj5g0003294 Lotus japonicus HOM05D005183 ORTHO05D006684 7.1e-133 477.6 315 74.9
Ciclev10028864m.g Citrus clementina HOM05D005183 ORTHO05D006684 9.3e-133 477.2 313 76.4
CSS0041546 Camellia sinensis var. sinensis HOM05D005183 ORTHO05D006684 2.1e-132 476.1 308 74.7
Cc09_g05380 Coffea canephora HOM05D005183 ORTHO05D006684 4.6e-132 474.9 313 73.2
THA.LOC104808666 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 6.0e-132 474.6 300 76.3
Aqoxy2G03309 Aquilegia oxysepala HOM05D005183 ORTHO05D006684 1.0e-131 473.8 309 73.5
CiPaw.09G008700 Carya illinoinensis HOM05D005183 ORTHO05D006684 1.0e-131 473.8 298 74.2
QL07p040540 Quercus lobata HOM05D005183 ORTHO05D006684 1.0e-131 473.8 315 73.0
TPR.G28986 Trifolium pratense HOM05D005183 ORTHO05D006684 1.3e-131 473.4 314 73.6
Oeu040539.1 Olea europaea HOM05D005183 ORTHO05D006684 1.8e-131 473.0 314 73.9
Actinidia10400 Actinidia chinensis HOM05D005183 ORTHO05D006684 3.0e-131 472.2 310 72.9
Hma1.2p1_0611F.1_g188660 Hydrangea macrophylla HOM05D005183 ORTHO05D006684 5.1e-131 471.5 313 73.5
Psat6g078200 Pisum sativum HOM05D005183 ORTHO05D006684 5.1e-131 471.5 314 72.9
ClCG10G019350 Citrullus lanatus HOM05D005183 ORTHO05D006684 6.7e-131 471.1 298 74.5
Nn2g14627 Nelumbo nucifera HOM05D005183 ORTHO05D006684 6.7e-131 471.1 315 72.4
Potri.015G088700 Populus trichocarpa HOM05D005183 ORTHO05D006684 1.5e-130 469.9 313 73.2
CAN.G1138.15 Capsicum annuum HOM05D005183 ORTHO05D006684 3.3e-130 468.8 314 73.2
PGSC0003DMG400028174 Solanum tuberosum HOM05D005183 ORTHO05D006684 3.3e-130 468.8 309 73.8
VMungo0720G1906 Vigna mungo HOM05D005183 ORTHO05D006684 3.3e-130 468.8 297 76.8
Peaxi162Scf00110g02022 Petunia axillaris HOM05D005183 ORTHO05D006684 4.3e-130 468.4 313 73.2
Sed0001030 Sechium edule HOM05D005183 ORTHO05D006684 4.3e-130 468.4 298 74.8
Phvul.007G223300 Phaseolus vulgaris HOM05D005183 ORTHO05D006684 2.1e-129 466.1 314 72.9
Oeu013577.1 Olea europaea HOM05D005183 ORTHO05D006684 3.7e-129 465.3 298 74.8
Solyc10g083600.2 Solanum lycopersicum HOM05D005183 ORTHO05D006684 4.8e-129 464.9 309 73.1
Glyma.10G066200 Glycine max HOM05D005183 ORTHO05D006684 6.3e-129 464.5 314 73.2
Medtr1g061160 Medicago truncatula HOM05D005183 ORTHO05D006684 1.1e-128 463.8 314 72.3
Glyma.13G151300 Glycine max HOM05D005183 ORTHO05D006684 1.4e-128 463.4 314 72.9
Lsat_1_v5_gn_4_35140 Lactuca sativa HOM05D005183 ORTHO05D006684 1.8e-128 463.0 293 75.8
MELO3C018272.2 Cucumis melo HOM05D005183 ORTHO05D006684 2.4e-128 462.6 298 73.2
Sopen10g033080 Solanum pennellii HOM05D005183 ORTHO05D006684 4.1e-128 461.8 309 72.8
Nitab4.5_0002715g0140 Nicotiana tabacum HOM05D005183 ORTHO05D006684 5.3e-128 461.5 311 73.6
DCAR_010653 Daucus carota HOM05D005183 ORTHO05D006684 9.0e-128 460.7 297 73.1
MSTRG.5807 Avicennia marina HOM05D005183 ORTHO05D006684 1.5e-127 459.9 297 74.4
Migut.J00983 Erythranthe guttata HOM05D005183 ORTHO05D006684 1.5e-127 459.9 298 74.8
CsaV3_3G036840 Cucumis sativus L. HOM05D005183 ORTHO05D006684 2.0e-127 459.5 298 72.5
DCAR_029401 Daucus carota HOM05D005183 ORTHO05D006684 2.6e-127 459.1 297 72.7
Cfa016373 Carpinus fangiana HOM05D005183 ORTHO05D006684 3.4e-127 458.8 309 70.9
SGA_v2.0_scaffold40G15402 Striga asiatica HOM05D005183 ORTHO05D006684 1.7e-126 456.4 315 71.7
Cfa008157 Carpinus fangiana HOM05D005183 ORTHO05D006684 2.2e-126 456.1 316 71.2
Haze_00122 Corylus avellana HOM05D005183 ORTHO05D006684 2.2e-126 456.1 336 67.3
Migut.N00918 Erythranthe guttata HOM05D005183 ORTHO05D006684 2.2e-126 456.1 313 72.2
SGA_v2.0_scaffold75G24795 Striga asiatica HOM05D005183 ORTHO05D006684 5.0e-126 454.9 315 71.1
vmacro17863 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 8.5e-126 454.1 335 67.8
BraA07t28669Z Brassica rapa HOM05D005183 ORTHO05D006684 1.1e-125 453.8 310 71.6
BcaC06g35547 Brassica carinata HOM05D005183 ORTHO05D006684 1.4e-125 453.4 310 71.6
BolC7t41857H Brassica oleracea HOM05D005183 ORTHO05D006684 1.4e-125 453.4 310 71.6
HanXRQChr02g0051911 Helianthus annuus HOM05D005183 ORTHO05D006684 1.9e-125 453.0 309 72.2
A07p08780 Brassica napus HOM05D005183 ORTHO05D006684 2.5e-125 452.6 310 71.3
C07p13620 Brassica napus HOM05D005183 ORTHO05D006684 4.2e-125 451.8 310 71.3
unitig_0.g1556 Utricularia gibba HOM05D005183 ORTHO05D006684 7.2e-125 451.1 309 71.8
TWI74G1514 Tripterygium wilfordii HOM05D005183 ORTHO05D006684 9.3e-125 450.7 293 74.1
BolC1t03963H Brassica oleracea HOM05D005183 ORTHO05D006684 1.2e-124 450.3 298 71.5
Aa31LG8G10050 Aethionema arabicum HOM05D005183 ORTHO05D006684 1.6e-124 449.9 314 70.1
C01p40070 Brassica napus HOM05D005183 ORTHO05D006684 2.7e-124 449.1 298 71.1
A01p31440 Brassica napus HOM05D005183 ORTHO05D006684 3.6e-124 448.7 298 70.8
BraA01t03270Z Brassica rapa HOM05D005183 ORTHO05D006684 3.6e-124 448.7 298 70.8
CDE08G0191 Ceratophyllum demersum HOM05D005183 ORTHO05D006684 3.6e-124 448.7 310 70.3
BcaB06g26517 Brassica carinata HOM05D005183 ORTHO05D006684 7.9e-124 447.6 310 70.0
BcaB04g20435 Brassica carinata HOM05D005183 ORTHO05D006684 1.8e-123 446.4 310 69.7
TPR.G5686 Trifolium pratense HOM05D005183 ORTHO05D006684 1.8e-123 446.4 292 74.0
Carub.0003s2385 Capsella rubella HOM05D005183 ORTHO05D006684 8.7e-123 444.1 300 69.7
Zm00001eb255650 Zea mays HOM05D005183 ORTHO05D006684 1.1e-122 443.7 303 71.3
Sabra15G0111600 Salix brachista HOM05D005183 ORTHO05D006684 1.9e-122 443.0 314 68.8
PSO478G0399 Papaver somniferum HOM05D005183 ORTHO05D006684 2.5e-122 442.6 309 70.6
Lj3A998T32 Lonicera japonica HOM05D005183 ORTHO05D006684 3.3e-122 442.2 312 69.6
ECA233G2114 Erigeron canadensis HOM05D005183 ORTHO05D006684 7.4e-122 441.0 286 74.8
Zm00001eb292270 Zea mays HOM05D005183 ORTHO05D006684 7.4e-122 441.0 303 71.0
HanXRQChr17g0545251 Helianthus annuus HOM05D005183 ORTHO05D006684 9.7e-122 440.7 299 72.9
PSO017G1745 Papaver somniferum HOM05D005183 ORTHO05D006684 9.7e-122 440.7 309 70.6
AL3G38300 Arabidopsis lyrata HOM05D005183 ORTHO05D006684 1.3e-121 440.3 298 69.8
Thhalv10021169m.g Eutrema salsugineum HOM05D005183 ORTHO05D006684 4.8e-121 438.3 313 68.1
Os01g0513800 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 6.3e-121 438.0 304 70.7
Nitab4.5_0005311g0010 Nicotiana tabacum HOM05D005183 ORTHO05D006684 1.8e-120 436.4 291 73.2
Prupe.7G117100 Prunus persica HOM05D005183 ORTHO05D006684 1.8e-120 436.4 308 68.5
CARHR099550 Cardamine hirsuta HOM05D005183 ORTHO05D006684 5.3e-120 434.9 310 68.1
Sp3g21310 Schrenkiella parvula HOM05D005183 ORTHO05D006684 5.3e-120 434.9 315 67.0
MD12G1018000 Malus domestica HOM05D005183 ORTHO05D006684 6.9e-120 434.5 307 68.1
AT3G23620 Arabidopsis thaliana HOM05D005183 ORTHO05D006684 1.2e-119 433.7 298 68.1
vmacro00782 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 6.5e-118 427.9 308 68.5
ATR0559G171 Amborella trichopoda HOM05D005183 ORTHO05D006684 1.4e-117 426.8 311 68.2
THA.LOC104804771 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 3.2e-117 425.6 264 78.0
HPP92_026689 Vanilla planifolia HOM05D005183 ORTHO05D006684 4.2e-117 425.2 303 66.3
FvH4_6g17900 Fragaria vesca HOM05D005183 ORTHO05D006684 7.2e-117 424.5 314 65.9
FAN02G4090 Fragaria x ananassa HOM05D005183 ORTHO05D006684 7.2e-117 424.5 314 65.9
FAN14G3711 Fragaria x ananassa HOM05D005183 ORTHO05D006684 7.2e-117 424.5 314 65.9
RcHm_v2.0_Chr3g0472151 Rosa chinensis HOM05D005183 ORTHO05D006684 1.2e-116 423.7 314 65.6
SEGI_13997 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 7.9e-116 421.0 311 66.2
FAN05G1411 Fragaria x ananassa HOM05D005183 ORTHO05D006684 3.0e-115 419.1 320 64.1
SEGI_31815 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 6.7e-115 417.9 311 66.2
FAN09G1214 Fragaria x ananassa HOM05D005183 ORTHO05D006684 2.6e-114 416.0 324 63.9
MD14G1016000 Malus domestica HOM05D005183 ORTHO05D006684 3.1e-112 409.1 288 68.1
HPP92_017999 Vanilla planifolia HOM05D005183 ORTHO05D006684 9.1e-112 407.5 291 65.3
Atru.chr8.1634 Acer truncatum HOM05D005183 ORTHO05D006684 1.5e-111 406.8 271 70.8
Gohir.A01G215950 Gossypium hirsutum HOM05D005183 ORTHO05D006684 3.8e-110 402.1 326 65.0
FAN05G2784 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.1e-104 384.0 253 70.8
Pp3c4_19370 Physcomitrium patens HOM05D005183 ORTHO05D006684 3.0e-99 365.9 311 58.2
Rhsim11G0063800 Rhododendron simsii HOM05D005183 ORTHO05D006684 3.7e-97 359.0 308 59.7
Actinidia31290 Actinidia chinensis HOM05D005183 ORTHO05D006684 1.4e-96 357.1 310 59.0
Lalb_Chr02g0155161 Lupinus albus HOM05D005183 ORTHO05D006684 1.2e-92 344.0 217 75.1
Mapoly0098s0050 Marchantia polymorpha HOM05D005183 ORTHO05D006684 2.1e-92 343.2 299 57.2
SMO367G0957 Selaginella moellendorffii HOM05D005183 ORTHO05D006684 3.6e-92 342.4 298 55.7
Pp3c26_6490 Physcomitrium patens HOM05D005183 ORTHO05D006684 4.8e-89 332.0 310 52.6
Ca_28565_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 1.2e-87 327.4 223 73.1
Nitab4.5_0000132g0170 Nicotiana tabacum HOM05D005183 ORTHO05D006684 5.0e-86 322.0 222 70.7
AagrBONN_evm.TU.Sc2ySwM_344.5577 Anthoceros agrestis HOM05D005183 ORTHO05D006684 8.0e-84 314.7 307 50.5
Haze_19538 Corylus avellana HOM05D005183 ORTHO05D006684 8.3e-81 304.7 276 58.0
CBR_g32692 Chara braunii HOM05D012618 ORTHO05D006684 7.8e-79 298.1 284 55.6
Cre03.g197000 Chlamydomonas reinhardtii HOM05D005183 ORTHO05D006684 1.2e-76 290.8 309 48.5
MCO10G188 Micromonas commoda HOM05D005183 ORTHO05D006684 8.0e-68 261.5 294 48.3
Oeu037537.3 Olea europaea HOM05D005183 ORTHO05D006684 3.2e-64 249.6 225 57.8
PRCOL_00004600 Prasinoderma coloniale HOM05D005183 ORTHO05D006684 2.6e-50 203.4 302 38.4
HanXRQChr08g0223931 Helianthus annuus HOM05D005183 ORTHO05D006684 4.3e-45 186.0 171 59.1
Ca_11626_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 9.6e-37 158.3 104 73.1
Lalb_Chr02g0155171 Lupinus albus HOM05D005183 ORTHO05D006684 8.4e-33 145.2 93 76.3
Os05g0506900 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 1.3e-30 137.9 94 70.2
MSTRG.19230 Avicennia marina HOM05D005183 ORTHO05D026969 9.6e-29 131.7 90 76.7
MELO3C028534.2 Cucumis melo HOM05D005183 ORTHO05D006684 6.4e-25 119.0 79 74.7
TAR371G0095 Trochodendron aralioides HOM05D005183 ORTHO05D045124 1.3e-20 104.8 114 54.4
C04p39730 Brassica napus HOM05D005183 ORTHO05D026969 1.8e-19 100.9 90 58.9
BolC4t25545H Brassica oleracea HOM05D005183 ORTHO05D026969 1.8e-19 100.9 90 58.9
BolC6t35803H Brassica oleracea HOM05D005183 ORTHO05D026969 3.5e-15 86.7 90 52.2
Dinv21257 Davidia involucrata HOM05D005183 ORTHO05D045124 4.1e-11 73.2 90 50.0


User provided reference genes

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