Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.2e-208 729.6 366 100.0
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 8.4e-133 477.6 339 69.9
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 2.1e-131 473.0 335 70.4
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 7.8e-131 471.1 350 68.3
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.3e-130 470.3 337 68.2
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.7e-130 469.9 325 69.8
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 3.0e-130 469.2 341 70.4
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 6.6e-130 468.0 334 69.5
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 8.7e-130 467.6 331 70.4
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 1.5e-129 466.8 328 72.0
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 1.5e-129 466.8 318 71.4
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 2.5e-129 466.1 332 71.1
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 3.3e-129 465.7 318 71.4
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 4.3e-129 465.3 326 70.2
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 5.6e-129 464.9 327 68.5
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 9.6e-129 464.2 328 69.8
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.3e-128 463.8 337 68.5
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 1.3e-128 463.8 366 65.8
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 2.1e-128 463.0 345 66.1
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 2.8e-128 462.6 318 71.1
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 3.6e-128 462.2 332 68.7
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 1.8e-127 459.9 320 71.2
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 3.1e-127 459.1 320 69.7
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 3.1e-127 459.1 321 70.4
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 3.1e-127 459.1 321 70.4
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 5.3e-127 458.4 330 69.4
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 5.3e-127 458.4 329 69.6
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 6.9e-127 458.0 318 70.8
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 9.0e-127 457.6 324 68.8
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 9.0e-127 457.6 339 67.8
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 1.5e-126 456.8 330 69.1
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 1.5e-126 456.8 332 69.6
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 2.0e-126 456.4 323 67.8
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 2.6e-126 456.1 338 66.0
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 3.4e-126 455.7 318 69.5
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.4e-126 455.7 321 69.5
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 3.4e-126 455.7 333 69.4
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 5.8e-126 454.9 314 71.3
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 7.6e-126 454.5 321 67.6
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 7.6e-126 454.5 328 69.2
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 7.6e-126 454.5 318 69.2
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 1.3e-125 453.8 321 71.0
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 1.3e-125 453.8 320 69.1
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.3e-125 453.8 320 69.1
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 1.7e-125 453.4 319 68.7
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 2.2e-125 453.0 318 69.5
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 2.9e-125 452.6 320 68.8
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 4.9e-125 451.8 326 69.0
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 8.4e-125 451.1 320 70.3
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 8.4e-125 451.1 318 68.6
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 8.4e-125 451.1 330 68.2
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 8.4e-125 451.1 327 69.1
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 1.1e-124 450.7 326 68.7
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 1.4e-124 450.3 327 69.4
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 1.4e-124 450.3 333 65.8
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 1.4e-124 450.3 321 68.8
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 1.9e-124 449.9 328 67.1
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 1.9e-124 449.9 335 66.0
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 2.4e-124 449.5 328 67.7
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 5.4e-124 448.4 345 66.4
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 5.4e-124 448.4 350 64.3
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 7.1e-124 448.0 320 68.1
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 7.1e-124 448.0 337 67.7
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 1.2e-123 447.2 339 66.4
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 2.1e-123 446.4 321 67.9
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 2.1e-123 446.4 321 68.8
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 2.7e-123 446.0 333 67.3
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 2.7e-123 446.0 337 65.0
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 3.5e-123 445.7 339 66.1
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 3.5e-123 445.7 330 66.4
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 6.0e-123 444.9 365 63.8
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 6.0e-123 444.9 351 64.7
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 7.9e-123 444.5 327 66.1
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 7.9e-123 444.5 330 65.5
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.7e-122 443.4 323 66.3
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 3.0e-122 442.6 327 68.5
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 3.9e-122 442.2 323 65.9
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 5.1e-122 441.8 327 67.3
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 5.1e-122 441.8 305 69.8
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 6.6e-122 441.4 322 68.0
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 1.1e-121 440.7 332 66.9
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 1.5e-121 440.3 323 68.7
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 1.5e-121 440.3 338 66.3
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.5e-121 440.3 320 68.1
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 1.9e-121 439.9 321 67.3
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 2.5e-121 439.5 322 68.3
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 4.3e-121 438.7 337 65.3
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 4.3e-121 438.7 305 70.2
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.1e-120 436.4 320 67.8
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 2.1e-120 436.4 333 63.1
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 2.8e-120 436.0 333 65.8
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 2.8e-120 436.0 333 65.8
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 4.8e-120 435.3 320 64.7
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 6.2e-120 434.9 341 65.1
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 8.1e-120 434.5 334 66.2
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 1.1e-119 434.1 338 65.1
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.1e-119 434.1 334 66.2
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 1.4e-119 433.7 338 64.8
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 1.4e-119 433.7 331 64.7
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.4e-119 433.0 306 70.3
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 5.3e-119 431.8 318 67.0
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.2e-118 430.6 310 70.0
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 1.2e-118 430.6 324 66.4
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 2.0e-118 429.9 309 70.2
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 2.0e-118 429.9 320 68.1
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 2.0e-118 429.9 375 61.9
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 5.8e-118 428.3 302 70.9
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 5.8e-118 428.3 307 67.8
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 5.8e-118 428.3 338 63.6
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 5.8e-118 428.3 358 61.5
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 1.3e-117 427.2 335 64.5
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 2.2e-117 426.4 328 65.9
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 2.2e-117 426.4 324 64.5
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 1.1e-116 424.1 326 67.2
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 7.1e-116 421.4 330 64.5
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 3.5e-115 419.1 323 63.8
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 4.3e-113 412.1 319 64.6
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 1.6e-112 410.2 329 64.1
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 2.1e-112 409.8 338 60.4
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 1.4e-111 407.1 345 62.3
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 3.8e-109 399.1 385 56.1
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 2.3e-106 389.8 540 43.7
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.3e-104 384.0 322 60.9
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 6.9e-103 378.3 257 70.8
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 1.2e-102 377.5 301 61.5
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 3.8e-101 372.5 318 59.4
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 3.7e-96 355.9 251 69.3
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 1.5e-94 350.5 341 57.8
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 7.7e-94 348.2 260 66.9
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 2.5e-92 343.2 270 65.9
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.4e-90 337.4 330 54.2
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 7.7e-86 321.6 318 52.8
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 1.9e-84 317.0 327 51.4
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 1.2e-83 314.3 231 67.1
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 2.1e-83 313.5 226 70.4
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 2.3e-82 310.1 216 71.8
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 2.0e-81 307.0 206 74.3
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 4.4e-81 305.8 285 58.6
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 8.2e-80 301.6 212 71.2
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 1.0e-77 294.7 208 70.7
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 6.5e-77 292.0 288 52.1
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 2.1e-75 287.0 267 58.1
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 2.3e-66 256.9 186 72.6
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.5e-65 254.2 173 74.6
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 9.8e-65 251.5 379 40.1
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 1.2e-62 244.6 162 74.7
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.5e-57 227.6 161 68.3
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 1.6e-54 217.6 217 54.8
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.5e-52 210.3 161 65.2
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 1.5e-49 201.1 163 63.8
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 1.2e-46 191.4 254 44.5
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 2.5e-44 183.7 336 36.6
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 2.2e-40 170.6 123 68.3
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 1.3e-37 161.4 146 54.1
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 1.0e-29 135.2 109 64.2
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.6e-27 127.9 351 29.6
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 1.1e-26 125.2 260 33.5
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.1e-26 125.2 109 55.0
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 2.3e-26 124.0 66 87.9
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 4.0e-26 123.2 388 29.1
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 6.9e-18 95.9 62 74.2
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 3.8e-16 90.1 123 43.9
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 7.1e-15 85.9 56 71.4
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 2.1e-14 84.3 57 66.7
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 1.7e-13 81.3 85 47.1
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 3.0e-13 80.5 57 68.4
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 3.9e-13 80.1 60 58.3
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 4.9e-08 63.2 78 47.4


User provided reference genes

Program Settings