Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g231540 Amaranthus hybridus HOM05D000861 ORTHO05D004749 5.6e-227 790.8 458 100.0
AUR62025238 Chenopodium quinoa HOM05D000861 ORTHO05D004749 8.3e-146 521.2 465 62.2
EL10Ac8g19073 Beta vulgaris HOM05D000861 ORTHO05D004749 1.2e-139 500.7 373 73.2
AUR62028947 Chenopodium quinoa HOM05D000861 ORTHO05D004749 3.7e-130 469.2 510 53.3
Sc13g0002540 Simmondsia chinensis HOM05D000861 ORTHO05D004749 3.2e-105 386.3 367 64.3
Duzib093G1597 Durio zibethinus HOM05D000861 ORTHO05D004749 2.4e-92 343.6 378 58.5
GSVIVG01033426001 Vitis vinifera HOM05D000861 ORTHO05D004749 5.3e-92 342.4 355 56.6
COL.COLO4_29438 Corchorus olitorius HOM05D000861 ORTHO05D004749 2.0e-91 340.5 360 61.1
Hma1.2p1_0516F.1_g170530 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 2.0e-91 340.5 373 55.0
Haze_20079 Corylus avellana HOM05D000861 ORTHO05D004749 2.6e-91 340.1 355 49.6
Dinv25026 Davidia involucrata HOM05D000861 ORTHO05D004749 7.6e-91 338.6 357 49.3
Duzib128G1936 Durio zibethinus HOM05D000861 ORTHO05D004749 7.6e-91 338.6 394 56.3
MD02G1263700 Malus domestica HOM05D000861 ORTHO05D004749 7.6e-91 338.6 352 59.7
Thecc.05G180600 Theobroma cacao HOM05D000861 ORTHO05D004749 9.9e-91 338.2 361 61.2
Lj1g0012940 Lotus japonicus HOM05D000861 ORTHO05D004749 1.3e-90 337.8 442 43.9
CSS0019173 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 1.4e-89 334.3 391 47.1
QL07p025600 Quercus lobata HOM05D000861 ORTHO05D004749 3.2e-89 333.2 352 52.3
TWI74G1428 Tripterygium wilfordii HOM05D000861 ORTHO05D004749 3.2e-89 333.2 354 51.1
Lalb_Chr20g0111111 Lupinus albus HOM05D000861 ORTHO05D004749 5.4e-89 332.4 367 47.1
Sp3g10170 Schrenkiella parvula HOM05D000861 ORTHO05D004749 1.6e-88 330.9 345 50.7
MD07G1054500 Malus domestica HOM05D000861 ORTHO05D004749 4.6e-88 329.3 342 59.6
AL3G23550 Arabidopsis lyrata HOM05D000861 ORTHO05D004749 1.0e-87 328.2 366 58.5
CiPaw.09G025900 Carya illinoinensis HOM05D000861 ORTHO05D004749 1.0e-87 328.2 348 51.4
CsaV3_4G031490 Cucumis sativus L. HOM05D000861 ORTHO05D004749 1.3e-87 327.8 361 47.9
CANSAT54G1949 Cannabis sativa HOM05D000861 ORTHO05D004749 1.8e-87 327.4 349 49.0
Glyma.03G206500 Glycine max HOM05D000861 ORTHO05D004749 3.0e-87 326.6 359 51.5
Prupe.2G061200 Prunus persica HOM05D000861 ORTHO05D004749 5.1e-87 325.9 342 50.6
Gohir.A09G130700 Gossypium hirsutum HOM05D000861 ORTHO05D004749 6.7e-87 325.5 377 56.2
Nn2g14698 Nelumbo nucifera HOM05D000861 ORTHO05D004749 8.7e-87 325.1 343 49.3
Potri.016G062900 Populus trichocarpa HOM05D000861 ORTHO05D004749 1.1e-86 324.7 336 50.0
MELO3C009074.2 Cucumis melo HOM05D000861 ORTHO05D008567 1.5e-86 324.3 358 47.2
ClCG04G000550 Citrullus lanatus HOM05D000861 ORTHO05D004749 1.9e-86 323.9 356 48.6
Manes.08G039800 Manihot esculenta HOM05D000861 ORTHO05D004749 2.5e-86 323.6 363 48.5
RcHm_v2.0_Chr1g0331291 Rosa chinensis HOM05D000861 ORTHO05D004749 2.5e-86 323.6 339 47.8
Atru.chr8.1223 Acer truncatum HOM05D000861 ORTHO05D004749 5.6e-86 322.4 354 59.3
Lj5g0002775 Lotus japonicus HOM05D000861 ORTHO05D004749 7.4e-86 322.0 372 56.5
Thhalv10020413m.g Eutrema salsugineum HOM05D000861 ORTHO05D004749 1.6e-85 320.9 440 51.6
Glyma.19G204100 Glycine max HOM05D000861 ORTHO05D004749 1.6e-85 320.9 461 43.8
Sopen04g019180 Solanum pennellii HOM05D000861 ORTHO05D004749 2.1e-85 320.5 383 46.2
TAR633G2067 Trochodendron aralioides HOM05D000861 ORTHO05D004749 2.1e-85 320.5 366 48.9
VMungo1383G1884 Vigna mungo HOM05D000861 ORTHO05D004749 2.1e-85 320.5 362 48.1
AT3G11950 Arabidopsis thaliana HOM05D000861 ORTHO05D004749 2.8e-85 320.1 366 57.4
FAN01G1629 Fragaria x ananassa HOM05D000861 ORTHO05D004749 8.1e-85 318.5 348 45.7
Nitab4.5_0000575g0240 Nicotiana tabacum HOM05D000861 ORTHO05D004749 8.1e-85 318.5 354 52.0
Aa31LG3G5570 Aethionema arabicum HOM05D000861 ORTHO05D004749 1.1e-84 318.2 327 58.7
Aqoxy4G02829 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 1.1e-84 318.2 379 44.9
Sabra16G0065200 Salix brachista HOM05D000861 ORTHO05D004749 1.1e-84 318.2 362 47.5
FAN06G3356 Fragaria x ananassa HOM05D000861 ORTHO05D004749 1.4e-84 317.8 342 46.8
Lalb_Chr01g0017651 Lupinus albus HOM05D000861 ORTHO05D004749 1.4e-84 317.8 435 43.9
Solyc04g049290.2 Solanum lycopersicum HOM05D000861 ORTHO05D004749 1.4e-84 317.8 383 46.0
THA.LOC104826781 Tarenaya hassleriana HOM05D000861 ORTHO05D004749 1.8e-84 317.4 452 42.7
Carub.0003s1128 Capsella rubella HOM05D000861 ORTHO05D004749 2.4e-84 317.0 449 49.7
Haze_04427 Corylus avellana HOM05D000861 ORTHO05D004749 4.0e-84 316.2 354 47.2
CSS0040474 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 9.0e-84 315.1 345 48.7
FvH4_7g05020 Fragaria vesca HOM05D000861 ORTHO05D004749 9.0e-84 315.1 348 45.7
Cfa006350 Carpinus fangiana HOM05D000861 ORTHO05D004749 1.2e-83 314.7 354 46.6
Ca_00040_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 1.5e-83 314.3 441 42.2
PGSC0003DMG400002212 Solanum tuberosum HOM05D000861 ORTHO05D004749 1.5e-83 314.3 433 42.0
Gohir.D01G123600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 2.0e-83 313.9 379 55.1
Gorai.002G154600 Gossypium raimondii HOM05D000861 ORTHO05D004749 2.0e-83 313.9 379 55.4
Peaxi162Scf00072g00619 Petunia axillaris HOM05D000861 ORTHO05D004749 3.4e-83 313.2 438 45.2
CARHR086500 Cardamine hirsuta HOM05D000861 ORTHO05D004749 5.8e-83 312.4 372 57.8
FAN10G0630 Fragaria x ananassa HOM05D000861 ORTHO05D004749 5.8e-83 312.4 348 44.8
Lj2A1153T47 Lonicera japonica HOM05D000861 ORTHO05D004749 5.8e-83 312.4 364 45.1
PGR004G1046 Punica granatum HOM05D000861 ORTHO05D004749 1.7e-82 310.8 358 45.3
Glyma.02G168400 Glycine max HOM05D000861 ORTHO05D004749 2.2e-82 310.5 371 44.7
Nitab4.5_0007421g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 2.2e-82 310.5 347 53.0
Gohir.A01G136400 Gossypium hirsutum HOM05D000861 ORTHO05D004749 2.9e-82 310.1 379 54.9
MBI01_g21127_MAGBIO Magnolia biondii HOM05D000861 ORTHO05D004749 4.9e-82 309.3 335 46.3
Aqoxy2G01335 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 6.4e-82 308.9 339 46.6
arahy.Tifrunner.gnm1.ann1.9W4D6L Arachis hypogaea HOM05D000861 ORTHO05D004749 1.4e-81 307.8 357 46.2
CiPaw.10G023500 Carya illinoinensis HOM05D000861 ORTHO05D004749 1.4e-81 307.8 355 47.0
Migut.C01187 Erythranthe guttata HOM05D000861 ORTHO05D004749 1.4e-81 307.8 335 46.6
arahy.Tifrunner.gnm1.ann1.BI8ZDZ Arachis hypogaea HOM05D000861 ORTHO05D004749 1.9e-81 307.4 357 45.9
Hma1.2p1_0636F.1_g193240 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 1.9e-81 307.4 329 46.8
RcHm_v2.0_Chr1g0331341 Rosa chinensis HOM05D000861 ORTHO05D004749 1.9e-81 307.4 306 49.3
Lalb_Chr25g0287681 Lupinus albus HOM05D000861 ORTHO05D004749 2.4e-81 307.0 369 45.5
Oeu022105.1 Olea europaea HOM05D000861 ORTHO05D004749 3.2e-81 306.6 368 55.4
Psat6g110040 Pisum sativum HOM05D000861 ORTHO05D004749 5.5e-81 305.8 362 45.3
PSO384G1311 Papaver somniferum HOM05D000861 ORTHO05D004749 7.1e-81 305.4 362 45.6
TAR636G3394 Trochodendron aralioides HOM05D000861 ORTHO05D004749 7.1e-81 305.4 360 45.0
ECA234G4058 Erigeron canadensis HOM05D000861 ORTHO05D004749 9.3e-81 305.1 364 45.6
Psat1g222880 Pisum sativum HOM05D000861 ORTHO05D004749 1.2e-80 304.7 367 45.0
vmacro05483 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 1.2e-80 304.7 368 47.0
Cc09_g02090 Coffea canephora HOM05D000861 ORTHO05D004749 1.6e-80 304.3 354 45.2
Oeu051191.1 Olea europaea HOM05D000861 ORTHO05D004749 2.7e-80 303.5 386 51.6
Oeu003219.1 Olea europaea HOM05D000861 ORTHO05D004749 4.6e-80 302.8 368 55.2
MSTRG.26071 Avicennia marina HOM05D000861 ORTHO05D004749 1.3e-79 301.2 369 53.7
TPR.G14497 Trifolium pratense HOM05D000861 ORTHO05D004749 1.3e-79 301.2 357 44.3
Peaxi162Scf00195g00910 Petunia axillaris HOM05D000861 ORTHO05D004749 1.8e-79 300.8 350 48.0
Medtr1g054715 Medicago truncatula HOM05D000861 ORTHO05D004749 2.3e-79 300.4 363 44.6
Rhsim10G0079800 Rhododendron simsii HOM05D000861 ORTHO05D004749 2.3e-79 300.4 368 44.3
BcaB06g25559 Brassica carinata HOM05D000861 ORTHO05D004749 6.7e-79 298.9 371 45.3
CAN.G186.36 Capsicum annuum HOM05D000861 ORTHO05D004749 6.7e-79 298.9 353 48.2
Sed0004581 Sechium edule HOM05D000861 ORTHO05D004749 6.7e-79 298.9 369 47.4
BcaC01g04070 Brassica carinata HOM05D000861 ORTHO05D007385 1.1e-78 298.1 350 56.0
BolC3t16804H Brassica oleracea HOM05D000861 ORTHO05D004749 1.1e-78 298.1 350 56.0
TPR.G2104 Trifolium pratense HOM05D000861 ORTHO05D004749 2.5e-78 297.0 419 40.8
Manes.09G040600 Manihot esculenta HOM05D000861 ORTHO05D004749 3.3e-78 296.6 307 49.2
TPR.G29255 Trifolium pratense HOM05D000861 ORTHO05D004749 3.3e-78 296.6 419 41.1
Phvul.007G262800 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 4.3e-78 296.2 372 46.2
C03p45380 Brassica napus HOM05D000861 ORTHO05D004749 5.6e-78 295.8 345 55.7
PGSC0003DMG400016019 Solanum tuberosum HOM05D000861 ORTHO05D004749 5.6e-78 295.8 350 46.9
SGA_v2.0_scaffold274G46507 Striga asiatica HOM05D000861 ORTHO05D004749 5.6e-78 295.8 371 46.1
arahy.Tifrunner.gnm1.ann1.2N6KDB Arachis hypogaea HOM05D000861 ORTHO05D004749 9.6e-78 295.0 374 44.1
Nn5g30627 Nelumbo nucifera HOM05D000861 ORTHO05D004749 9.6e-78 295.0 341 44.6
arahy.Tifrunner.gnm1.ann1.5F6CY5 Arachis hypogaea HOM05D000861 ORTHO05D004749 1.3e-77 294.7 374 44.1
Eucgr.A02509 Eucalyptus grandis HOM05D000861 ORTHO05D004749 1.3e-77 294.7 367 44.4
HanXRQChr12g0359061 Helianthus annuus HOM05D000861 ORTHO05D004749 1.6e-77 294.3 451 38.4
VMungo0720G2154 Vigna mungo HOM05D000861 ORTHO05D004749 3.7e-77 293.1 370 43.0
BraA03t12899Z Brassica rapa HOM05D000861 ORTHO05D004749 4.8e-77 292.7 359 54.3
Phvul.001G200100 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 4.8e-77 292.7 302 56.0
Solyc04g009600.3 Solanum lycopersicum HOM05D000861 ORTHO05D004749 8.2e-77 292.0 364 46.4
Sabra06G0151900 Salix brachista HOM05D000861 ORTHO05D004749 1.1e-76 291.6 383 43.6
Lsat_1_v5_gn_2_66000 Lactuca sativa HOM05D000861 ORTHO05D004749 2.4e-76 290.4 345 44.9
Ciclev10012217m.g Citrus clementina HOM05D000861 ORTHO05D004749 3.1e-76 290.0 306 46.4
Ca_26442_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 5.3e-76 289.3 307 51.1
Sabra16G0064900 Salix brachista HOM05D000861 ORTHO05D004749 6.9e-76 288.9 365 44.4
A03p37380 Brassica napus HOM05D000861 ORTHO05D004749 9.0e-76 288.5 359 53.8
Lj1A65T56 Lonicera japonica HOM05D000861 ORTHO05D004749 1.2e-75 288.1 333 43.2
Sopen04g004750 Solanum pennellii HOM05D000861 ORTHO05D004749 2.6e-75 287.0 457 42.7
unitig_749.g14024 Utricularia gibba HOM05D000861 ORTHO05D004749 4.9e-74 282.7 316 47.5
Nitab4.5_0008820g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 6.5e-74 282.3 352 44.9
Nitab4.5_0000691g0150 Nicotiana tabacum HOM05D000861 ORTHO05D004749 2.1e-72 277.3 338 55.3
BraA05t22541Z Brassica rapa HOM05D000861 ORTHO05D007385 4.3e-70 269.6 369 42.8
C05p55990 Brassica napus HOM05D000861 ORTHO05D004749 5.7e-70 269.2 371 42.9
A05p37430 Brassica napus HOM05D000861 ORTHO05D007385 9.7e-70 268.5 363 43.3
CDE05G2486 Ceratophyllum demersum HOM05D000861 ORTHO05D004749 2.8e-69 266.9 330 44.2
BcaC05g29310 Brassica carinata HOM05D000861 ORTHO05D004749 3.7e-69 266.5 451 38.6
Cpa.g.sc85.15 Carica papaya HOM05D000861 ORTHO05D004749 3.7e-69 266.5 209 62.2
Sabra16G0065500 Salix brachista HOM05D000861 ORTHO05D004749 3.7e-69 266.5 375 42.4
Dinv24029 Davidia involucrata HOM05D000861 ORTHO05D004749 2.4e-68 263.8 214 58.4
Gohir.D09G126600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 7.2e-65 252.3 294 49.7
Gorai.006G145500 Gossypium raimondii HOM05D000861 ORTHO05D004749 9.4e-65 251.9 294 58.5
DCAR_027450 Daucus carota HOM05D000861 ORTHO05D004749 1.2e-64 251.5 359 41.8
BcaB04g18704 Brassica carinata HOM05D000861 ORTHO05D004749 2.7e-64 250.4 204 58.8
vmacro22548 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 2.3e-63 247.3 368 41.8
ATR0789G014 Amborella trichopoda HOM05D000861 ORTHO05D004749 5.1e-63 246.1 286 43.0
PSO425G0018 Papaver somniferum HOM05D000861 ORTHO05D004749 3.1e-60 236.9 299 43.5
HPP92_008306 Vanilla planifolia HOM05D000861 ORTHO05D004749 3.6e-56 223.4 198 51.0
Zm00001eb246660 Zea mays HOM05D000861 ORTHO05D004749 4.7e-56 223.0 326 36.5
SHI28323 Sapria himalayana HOM05D000861 ORTHO05D004749 1.7e-53 214.5 312 36.2
Zm00001eb195790 Zea mays HOM05D000861 ORTHO05D004749 6.3e-53 212.6 314 43.9
Zm00001eb093630 Zea mays HOM05D000861 ORTHO05D004749 1.5e-51 208.0 314 50.0
Os04g0218900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.0e-51 207.6 335 43.0
Os05g0305200 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.0e-51 207.6 335 43.3
Os02g0605500 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 3.4e-51 206.8 323 35.3
Os12g0181300 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 3.8e-50 203.4 322 41.3
Zm00001eb421970 Zea mays HOM05D000861 ORTHO05D004749 2.5e-41 174.1 291 36.1
Mapoly0057s0035 Marchantia polymorpha HOM05D000861 ORTHO05D004749 1.4e-39 168.3 268 35.4
Os04g0217900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 4.0e-39 166.8 172 47.7
TAR626G0577 Trochodendron aralioides HOM05D000861 ORTHO05D003237 3.3e-38 163.7 137 59.9
SMO194G0050 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 1.2e-35 155.2 262 37.0
SMO358G0316 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 1.2e-35 155.2 262 37.0
CBR_g23522 Chara braunii HOM05D000861 ORTHO05D004749 2.0e-35 154.5 271 32.5
Actinidia01592 Actinidia chinensis HOM05D000861 ORTHO05D004749 4.5e-35 153.3 214 39.7
Pp3c13_13880 Physcomitrium patens HOM05D000861 ORTHO05D004749 4.5e-35 153.3 265 31.3
TAR626G1779 Trochodendron aralioides HOM05D000861 ORTHO05D004749 2.9e-34 150.6 118 61.9
HPP92_003796 Vanilla planifolia HOM05D000861 ORTHO05D004749 1.5e-33 148.3 137 52.6
Pp3c24_6130 Physcomitrium patens HOM05D000861 ORTHO05D004749 7.2e-33 146.0 264 30.3
AagrBONN_evm.TU.Sc2ySwM_228.1074 Anthoceros agrestis HOM05D000861 ORTHO05D004749 2.1e-32 144.4 189 39.2
SEGI_19220 Sequoiadendron giganteum HOM05D000861 ORTHO05D004749 3.7e-29 133.7 270 30.0
Nitab4.5_0000691g0180 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.4e-28 131.7 165 61.8
TAR371G0304 Trochodendron aralioides HOM05D000861 ORTHO05D003237 2.7e-27 127.5 115 55.7
HPP92_003821 Vanilla planifolia HOM05D000861 ORTHO05D004749 8.9e-23 112.5 214 31.3
Actinidia17295 Actinidia chinensis HOM05D000861 ORTHO05D004749 3.6e-16 90.5 132 36.4
HPP92_003822 Vanilla planifolia HOM05D000861 ORTHO05D004749 5.2e-15 86.7 80 50.0
SalBow6G1870 Salvia bowleyana HOM05D000861 ORTHO05D004749 9.2e-12 75.9 200 33.5
Actinidia38607 Actinidia chinensis HOM05D000861 ORTHO05D004749 1.0e-10 72.4 99 42.4
RcHm_v2.0_Chr3g0486371 Rosa chinensis HOM05D000861 ORTHO05D004749 6.2e-08 63.2 70 44.3
RcHm_v2.0_Chr3g0486361 Rosa chinensis HOM05D000861 ORTHO05D004749 1.5e-06 58.5 55 43.6


User provided reference genes

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