Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 3.6e-308 1060.8 566 100.0
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 4.5e-186 655.2 566 63.1
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 7.1e-155 551.6 565 58.9
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 9.0e-134 481.5 441 62.1
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.1e-123 448.0 570 49.5
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 2.4e-123 446.8 574 47.6
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 3.2e-123 446.4 570 48.9
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 3.5e-122 443.0 560 49.6
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 1.0e-121 441.4 560 49.3
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 3.0e-121 439.9 566 48.9
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 3.9e-121 439.5 564 50.2
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 3.3e-120 436.4 567 48.3
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 3.3e-120 436.4 569 46.9
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 4.3e-120 436.0 567 49.0
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 5.6e-120 435.6 567 48.7
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 6.2e-119 432.2 566 46.6
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 1.1e-118 431.4 571 45.9
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 3.1e-118 429.9 557 48.8
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 1.2e-117 427.9 577 47.5
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 3.4e-117 426.4 560 48.8
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 1.3e-116 424.5 549 47.2
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 6.5e-116 422.2 549 47.0
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 6.5e-116 422.2 584 46.9
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 8.4e-116 421.8 559 49.6
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 8.4e-116 421.8 565 46.4
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 1.1e-115 421.4 568 47.7
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 2.5e-115 420.2 569 47.6
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 1.6e-114 417.5 562 45.7
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 3.5e-114 416.4 551 46.5
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 1.3e-113 414.5 566 44.3
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 1.3e-113 414.5 566 44.3
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 3.3e-112 409.8 586 44.7
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 5.7e-112 409.1 538 45.2
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 7.4e-112 408.7 556 47.3
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 9.6e-112 408.3 575 44.9
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.6e-111 407.5 546 45.2
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 2.1e-111 407.1 575 46.3
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 2.8e-111 406.8 564 46.1
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 3.7e-111 406.4 566 44.5
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 4.8e-111 406.0 575 45.2
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 4.8e-111 406.0 575 46.3
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 4.8e-111 406.0 564 45.7
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 6.3e-111 405.6 560 47.3
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 8.2e-111 405.2 417 61.9
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 3.1e-110 403.3 538 48.1
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 9.0e-110 401.7 565 46.9
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 1.5e-109 401.0 569 46.4
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 1.5e-109 401.0 561 44.4
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 1.5e-109 401.0 596 43.6
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 2.0e-109 400.6 580 47.4
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.0e-109 400.6 567 45.9
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 4.5e-109 399.4 555 45.8
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 5.9e-109 399.1 569 45.5
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 7.6e-109 398.7 549 45.5
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 2.2e-108 397.1 553 46.5
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 2.9e-108 396.7 548 46.0
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 2.9e-108 396.7 536 47.0
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 5.0e-108 396.0 548 46.0
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 6.5e-108 395.6 592 44.6
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 8.5e-108 395.2 567 47.4
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 2.5e-107 393.7 563 46.5
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 1.2e-106 391.3 534 44.2
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 1.6e-106 391.0 618 43.5
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 3.6e-106 389.8 612 41.3
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 7.9e-106 388.7 565 45.5
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 1.0e-105 388.3 557 46.3
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 1.3e-105 387.9 583 43.7
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 2.3e-105 387.1 574 46.2
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 2.3e-105 387.1 569 42.5
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 2.3e-105 387.1 578 42.7
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 3.0e-105 386.7 572 45.5
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 3.9e-105 386.3 541 43.4
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 3.9e-105 386.3 598 42.6
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 6.7e-105 385.6 559 44.2
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 4.3e-104 382.9 557 42.9
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 7.4e-104 382.1 595 42.4
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 9.7e-104 381.7 558 41.8
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 2.2e-103 380.6 541 43.1
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 2.2e-103 380.6 585 44.8
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 2.8e-103 380.2 542 43.7
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 2.8e-103 380.2 580 45.7
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 4.8e-103 379.4 569 42.4
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 4.8e-103 379.4 554 42.1
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 8.2e-103 378.6 541 42.7
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 1.4e-102 377.9 542 43.5
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 2.4e-102 377.1 584 43.2
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 4.1e-102 376.3 557 43.8
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 6.9e-102 375.6 574 40.9
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 1.2e-101 374.8 530 42.5
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 6.5e-100 369.0 565 44.8
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 1.1e-99 368.2 556 41.2
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 3.6e-98 363.2 566 43.3
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 5.1e-97 359.4 577 43.0
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 5.7e-96 355.9 572 40.6
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 2.2e-95 354.0 518 46.1
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 6.3e-95 352.4 571 43.1
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 9.1e-94 348.6 599 42.4
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.2e-93 348.2 447 45.2
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 4.2e-91 339.7 600 37.8
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 1.2e-90 338.2 573 41.7
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 3.9e-89 333.2 568 40.7
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 3.7e-87 326.6 490 42.0
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 1.1e-86 325.1 542 44.8
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 2.0e-85 320.9 490 41.2
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 2.6e-85 320.5 565 40.7
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 5.9e-85 319.3 534 39.3
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 1.7e-84 317.8 714 33.6
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 7.2e-83 312.4 471 39.3
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 4.4e-80 303.1 490 40.4
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 9.7e-80 302.0 547 38.2
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 1.3e-79 301.6 587 39.4
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 8.2e-79 298.9 321 48.6
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 5.9e-77 292.7 310 48.7
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 9.4e-75 285.4 545 36.1
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 4.0e-73 280.0 658 32.2
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 1.5e-72 278.1 516 36.8
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 7.2e-67 259.2 564 31.7
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 2.8e-66 257.3 277 46.9
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 4.1e-62 243.4 655 31.3
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 1.9e-59 234.6 442 38.5
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 1.0e-57 228.8 699 28.3
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 2.4e-54 217.6 534 31.1
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 1.2e-50 205.3 283 39.2
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 2.8e-50 204.1 648 27.9
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 1.8e-49 201.4 575 30.6
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 6.8e-49 199.5 214 49.1
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 2.3e-33 147.9 140 53.6
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 3.1e-33 147.5 175 46.3
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 7.6e-32 142.9 296 31.1
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 2.4e-30 137.9 282 30.1
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 2.4e-30 137.9 476 23.7
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 4.1e-30 137.1 158 55.7
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 6.6e-28 129.8 550 25.1
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 2.1e-26 124.8 294 29.9
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 6.9e-25 119.8 181 46.4
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 2.4e-22 111.3 127 47.2
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 1.1e-19 102.4 179 31.8
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 6.4e-15 86.7 88 50.0
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 6.4e-15 86.7 88 50.0
unitig_746.g26560 Utricularia gibba HOM05D005537 ORTHO05D006776 7.1e-14 83.2 135 39.3
MSTRG.6231 Avicennia marina HOM05D005537 ORTHO05D006776 6.2e-10 70.1 79 46.8


User provided reference genes

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