Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g229250 Amaranthus hybridus HOM05D006185 ORTHO05D007572 2.0e-106 389.0 189 100.0
EL10Ac8g19027 Beta vulgaris HOM05D006185 ORTHO05D007572 4.8e-92 341.3 189 86.2
Hund26074 Selenicereus undatus HOM05D006185 ORTHO05D007572 1.0e-86 323.6 189 81.0
Sc06g0006920 Simmondsia chinensis HOM05D006185 ORTHO05D007572 1.3e-81 306.6 187 75.9
Haze_26036 Corylus avellana HOM05D006185 ORTHO05D007572 2.9e-81 305.4 189 77.2
Gohir.A05G034500 Gossypium hirsutum HOM05D006185 ORTHO05D007572 2.5e-80 302.4 189 74.6
QL11p001224 Quercus lobata HOM05D006185 ORTHO05D007572 9.5e-80 300.4 185 75.1
Cfa002967 Carpinus fangiana HOM05D006185 ORTHO05D007572 1.2e-79 300.1 188 75.5
TWI63G0883 Tripterygium wilfordii HOM05D006185 ORTHO05D007572 1.2e-79 300.1 185 75.1
Atru.chr7.1733 Acer truncatum HOM05D006185 ORTHO05D007572 1.6e-79 299.7 186 74.2
Gohir.D05G035900 Gossypium hirsutum HOM05D006185 ORTHO05D007572 2.1e-79 299.3 189 74.1
Gorai.009G036500 Gossypium raimondii HOM05D006185 ORTHO05D007572 2.1e-79 299.3 189 74.1
Ciclev10009607m.g Citrus clementina HOM05D006185 ORTHO05D007572 2.8e-79 298.9 185 74.6
COL.COLO4_18072 Corchorus olitorius HOM05D006185 ORTHO05D007572 2.8e-79 298.9 189 73.5
CiPaw.03G203800 Carya illinoinensis HOM05D006185 ORTHO05D007572 3.6e-79 298.5 189 74.1
Manes.03G041800 Manihot esculenta HOM05D006185 ORTHO05D007572 1.4e-78 296.6 190 75.3
Duzib150G0101 Durio zibethinus HOM05D006185 ORTHO05D007572 8.9e-78 293.9 189 73.0
ClCG03G014940 Citrullus lanatus HOM05D006185 ORTHO05D007572 1.5e-77 293.1 186 73.1
CsaV3_1G041210 Cucumis sativus L. HOM05D006185 ORTHO05D007572 2.0e-77 292.7 188 71.8
Lj7A688T82 Lonicera japonica HOM05D006185 ORTHO05D007572 2.0e-77 292.7 188 75.0
Duzib187G0940 Durio zibethinus HOM05D006185 ORTHO05D007572 2.6e-77 292.4 189 73.5
vmacro17122 Vaccinium macrocarpon HOM05D006185 ORTHO05D007572 3.4e-77 292.0 184 76.1
Potri.006G140000 Populus trichocarpa HOM05D006185 ORTHO05D007572 4.4e-77 291.6 186 75.3
Cpa.g.sc28.15 Carica papaya HOM05D006185 ORTHO05D007572 5.7e-77 291.2 190 70.0
Eucgr.C03305 Eucalyptus grandis HOM05D006185 ORTHO05D007572 9.8e-77 290.4 188 70.7
SGA_v2.0_scaffold296G47554 Striga asiatica HOM05D006185 ORTHO05D007572 9.8e-77 290.4 186 73.7
Thecc.09G074200 Theobroma cacao HOM05D006185 ORTHO05D007572 1.3e-76 290.0 189 72.5
SalBow5G0266 Salvia bowleyana HOM05D006185 ORTHO05D007572 2.8e-76 288.9 187 72.7
Ca_09309_v3 Cicer arietinum L. HOM05D006185 ORTHO05D007572 4.9e-76 288.1 184 72.8
CANSAT56G1413 Cannabis sativa HOM05D006185 ORTHO05D007572 6.3e-76 287.7 186 71.5
RcHm_v2.0_Chr2g0095441 Rosa chinensis HOM05D006185 ORTHO05D007572 6.3e-76 287.7 189 68.3
AUR62028278 Chenopodium quinoa HOM05D006185 ORTHO05D007572 1.4e-75 286.6 189 74.6
CANSAT56G3530 Cannabis sativa HOM05D006185 ORTHO05D007572 1.8e-75 286.2 187 72.2
Cc06_g12450 Coffea canephora HOM05D006185 ORTHO05D007572 1.8e-75 286.2 190 70.5
Dinv25540 Davidia involucrata HOM05D006185 ORTHO05D007572 1.8e-75 286.2 186 71.5
CANSAT56G0026 Cannabis sativa HOM05D006185 ORTHO05D007572 3.1e-75 285.4 186 71.5
CANSAT56G1917 Cannabis sativa HOM05D006185 ORTHO05D007572 4.1e-75 285.0 187 71.7
FAN26G0065 Fragaria x ananassa HOM05D006185 ORTHO05D007572 7.0e-75 284.3 187 69.0
FAN26G3397 Fragaria x ananassa HOM05D006185 ORTHO05D007572 7.0e-75 284.3 187 69.0
Oeu062247.1 Olea europaea HOM05D006185 ORTHO05D007572 7.0e-75 284.3 191 72.3
TPR.G12562 Trifolium pratense HOM05D006185 ORTHO05D007572 1.6e-74 283.1 184 71.2
AT1G19130 Arabidopsis thaliana HOM05D006185 ORTHO05D007572 2.0e-74 282.7 186 72.6
Migut.L01579 Erythranthe guttata HOM05D006185 ORTHO05D007572 2.0e-74 282.7 182 73.6
Gorai.010G090200 Gossypium raimondii HOM05D006185 ORTHO05D007572 2.7e-74 282.3 189 69.8
GSVIVG01015050001 Vitis vinifera HOM05D006185 ORTHO05D007572 2.7e-74 282.3 186 72.0
Prupe.7G195700 Prunus persica HOM05D006185 ORTHO05D007572 3.5e-74 282.0 186 71.0
Carub.0001s1876 Capsella rubella HOM05D006185 ORTHO05D007572 4.5e-74 281.6 186 72.6
FvH4_1g09020 Fragaria vesca HOM05D006185 ORTHO05D007572 4.5e-74 281.6 187 68.4
FAN19G1369 Fragaria x ananassa HOM05D006185 ORTHO05D007572 4.5e-74 281.6 187 68.4
unitig_699.g19263 Utricularia gibba HOM05D000454 ORTHO05D007572 5.9e-74 281.2 182 71.4
CSS0028340 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 7.8e-74 280.8 186 71.0
THA.LOC104799837 Tarenaya hassleriana HOM05D006185 ORTHO05D007572 7.8e-74 280.8 186 70.4
TAR624G1115 Trochodendron aralioides HOM05D006185 ORTHO05D007572 7.8e-74 280.8 190 69.5
Psat7g057800 Pisum sativum HOM05D006185 ORTHO05D007572 1.3e-73 280.0 181 71.3
PGR044G1997 Punica granatum HOM05D006185 ORTHO05D007572 1.3e-73 280.0 185 68.6
Aa31LG7G3870 Aethionema arabicum HOM05D006185 ORTHO05D007572 2.3e-73 279.3 186 71.5
Thhalv10008865m.g Eutrema salsugineum HOM05D006185 ORTHO05D007572 2.3e-73 279.3 186 71.5
CAN.G1661.20 Capsicum annuum HOM05D006185 ORTHO05D007572 2.9e-73 278.9 190 67.9
Rhsim05G0005100 Rhododendron simsii HOM05D006185 ORTHO05D007572 2.9e-73 278.9 189 71.4
AL1G31710 Arabidopsis lyrata HOM05D006185 ORTHO05D007572 3.8e-73 278.5 186 71.5
Lsat_1_v5_gn_8_85701 Lactuca sativa HOM05D006185 ORTHO05D007572 3.8e-73 278.5 189 70.4
CSS0016181 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 6.6e-73 277.7 183 71.0
ECA236G4868 Erigeron canadensis HOM05D006185 ORTHO05D007572 8.6e-73 277.3 187 69.0
Peaxi162Scf00928g00132 Petunia axillaris HOM05D006185 ORTHO05D007572 8.6e-73 277.3 184 70.1
Sabra06G0109300 Salix brachista HOM05D006185 ORTHO05D007572 1.1e-72 276.9 217 64.1
MELO3C015534.2 Cucumis melo HOM05D006185 ORTHO05D007572 1.5e-72 276.6 205 64.9
Phvul.003G129600 Phaseolus vulgaris HOM05D006185 ORTHO05D007572 1.5e-72 276.6 186 69.4
FAN23G1580 Fragaria x ananassa HOM05D006185 ORTHO05D007572 1.9e-72 276.2 187 67.4
Lalb_Chr07g0181271 Lupinus albus HOM05D006185 ORTHO05D007572 1.9e-72 276.2 185 71.9
MD02G1095400 Malus domestica HOM05D006185 ORTHO05D007572 1.9e-72 276.2 185 71.4
Nitab4.5_0000073g0300 Nicotiana tabacum HOM05D006185 ORTHO05D007572 3.3e-72 275.4 184 69.6
Hund26091 Selenicereus undatus HOM05D006185 ORTHO05D007572 3.3e-72 275.4 185 67.6
Solyc12g009180.2 Solanum lycopersicum HOM05D006185 ORTHO05D007572 3.3e-72 275.4 187 69.0
Sopen12g004130 Solanum pennellii HOM05D006185 ORTHO05D007572 3.3e-72 275.4 187 68.4
Nitab4.5_0004234g0030 Nicotiana tabacum HOM05D006185 ORTHO05D007572 4.3e-72 275.0 184 69.0
Sc08g0009100 Simmondsia chinensis HOM05D006185 ORTHO05D007572 4.3e-72 275.0 188 67.6
Glyma.13G111600 Glycine max HOM05D006185 ORTHO05D007572 5.6e-72 274.6 187 69.0
AUR62025276 Chenopodium quinoa HOM05D006185 ORTHO05D007572 7.3e-72 274.2 148 85.8
A08p30000 Brassica napus HOM05D006185 ORTHO05D007572 1.6e-71 273.1 186 69.4
BraA08t34935Z Brassica rapa HOM05D006185 ORTHO05D007572 1.6e-71 273.1 186 69.4
Lj4g0025093 Lotus japonicus HOM05D006185 ORTHO05D007572 1.6e-71 273.1 185 68.1
VMungo1215G2404 Vigna mungo HOM05D006185 ORTHO05D007572 2.1e-71 272.7 186 69.4
BcaC07g38980 Brassica carinata HOM05D006185 ORTHO05D007572 2.8e-71 272.3 186 69.4
Medtr4g125100 Medicago truncatula HOM05D006185 ORTHO05D007572 3.6e-71 271.9 185 70.3
C08p19220 Brassica napus HOM05D006185 ORTHO05D007572 8.0e-71 270.8 186 68.8
BolC8t49541H Brassica oleracea HOM05D006185 ORTHO05D007572 8.0e-71 270.8 186 68.8
HanXRQChr04g0125931 Helianthus annuus HOM05D006185 ORTHO05D007572 8.0e-71 270.8 188 67.0
PGSC0003DMG400002903 Solanum tuberosum HOM05D006185 ORTHO05D007572 8.0e-71 270.8 187 67.9
BcaB03g12935 Brassica carinata HOM05D006185 ORTHO05D007572 3.1e-70 268.9 187 69.0
DCAR_010492 Daucus carota HOM05D006185 ORTHO05D007572 2.2e-68 262.7 184 66.3
AUR62028304 Chenopodium quinoa HOM05D006185 ORTHO05D007572 1.1e-67 260.4 189 63.5
Nn6g35681 Nelumbo nucifera HOM05D006185 ORTHO05D007572 1.4e-67 260.0 186 65.1
AUR62025298 Chenopodium quinoa HOM05D006185 ORTHO05D007572 1.9e-67 259.6 189 63.5
EL10Ac8g18996 Beta vulgaris HOM05D006185 ORTHO05D007572 2.4e-67 259.2 185 64.3
Actinidia30236 Actinidia chinensis HOM05D006185 ORTHO05D007572 7.0e-67 257.7 223 58.7
HanXRQChr06g0168681 Helianthus annuus HOM05D006185 ORTHO05D007572 1.2e-66 256.9 188 61.7
MBI13_g00698_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 7.8e-66 254.2 188 67.0
Aqoxy7G04191 Aquilegia oxysepala HOM05D006185 ORTHO05D007572 1.6e-63 246.5 188 62.2
ECA236G2592 Erigeron canadensis HOM05D006185 ORTHO05D007572 2.1e-63 246.1 190 62.1
Eucgr.C00790 Eucalyptus grandis HOM05D006185 ORTHO05D007572 3.6e-63 245.4 188 63.3
Nn5g27974 Nelumbo nucifera HOM05D006185 ORTHO05D007572 6.2e-63 244.6 186 62.4
HPP92_004362 Vanilla planifolia HOM05D006185 ORTHO05D007572 2.3e-62 242.7 174 66.7
Lsat_1_v5_gn_8_85721 Lactuca sativa HOM05D006185 ORTHO05D007572 4.4e-61 238.4 184 60.3
Lalb_Chr12g0200241 Lupinus albus HOM05D006185 ORTHO05D007572 5.8e-61 238.0 189 61.9
arahy.Tifrunner.gnm1.ann1.Y0H2IU Arachis hypogaea HOM05D006185 ORTHO05D007572 1.4e-59 233.4 185 61.1
ATR0006G060 Amborella trichopoda HOM05D006185 ORTHO05D007572 1.9e-59 233.0 187 60.4
arahy.Tifrunner.gnm1.ann1.85MSRM Arachis hypogaea HOM05D006185 ORTHO05D007572 1.9e-59 233.0 185 61.1
Sed0027040 Sechium edule HOM05D006185 ORTHO05D007572 1.6e-58 229.9 148 70.9
Zm00001eb040490 Zea mays HOM05D006185 ORTHO05D007572 1.3e-57 226.9 191 56.0
Os08g0455800 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 1.9e-56 223.0 185 55.1
SEGI_13235 Sequoiadendron giganteum HOM05D006185 ORTHO05D007572 1.9e-56 223.0 190 59.5
Gohir.A06G078100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 3.3e-56 222.2 150 69.3
MBI19_g05291_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 3.3e-56 222.2 179 63.1
Os06g0198500 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 2.3e-54 216.1 189 54.0
MBI13_g47248_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 4.0e-54 215.3 188 58.5
Mapoly0007s0060 Marchantia polymorpha HOM05D006185 ORTHO05D007572 4.0e-54 215.3 185 55.1
Pp3c9_22400 Physcomitrium patens HOM05D006185 ORTHO05D007572 9.9e-53 210.7 189 52.4
SMO340G0144 Selaginella moellendorffii HOM05D006185 ORTHO05D007572 3.2e-51 205.7 185 53.5
Gohir.D06G077100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 5.4e-51 204.9 135 68.9
MSTRG.26479 Avicennia marina HOM05D006185 ORTHO05D007572 4.2e-35 152.1 111 64.9
CARHR019730 Cardamine hirsuta HOM05D006185 ORTHO05D007572 2.5e-32 142.9 82 82.9
Ah.14g084750 Amaranthus hybridus HOM05D006185 ORTHO05D007572 2.8e-31 139.4 109 59.6
FAN28G1197 Fragaria x ananassa HOM05D006185 ORTHO05D007572 3.1e-30 136.0 84 70.2
MBI14_g46913_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.9e-24 116.7 101 57.4
Os06g0198600 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 1.4e-19 100.5 120 45.0
Eucgr.C00789 Eucalyptus grandis HOM05D006185 ORTHO05D007572 1.3e-15 87.4 95 48.4
BcaB02g10882 Brassica carinata HOM05D006185 ORTHO05D007572 1.8e-09 67.0 78 46.2
PRCOL_00002298 Prasinoderma coloniale HOM05D006185 ORTHO05D007572 6.3e-07 58.5 187 27.3


User provided reference genes

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