Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g226860 Amaranthus hybridus HOM05D003918 ORTHO05D004494 9.0e-103 377.1 214 100.0
Ah.03g143830 Amaranthus hybridus HOM05D003918 ORTHO05D004494 9.8e-25 117.9 70 90.0
EL10Ac6g13165 Beta vulgaris HOM05D000940 ORTHO05D000782 1.8e-10 70.5 45 73.3
Hma1.2p1_0772F.1_g215980 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 2.2e-08 63.5 43 79.1
EL10Ac9g21015 Beta vulgaris HOM05D003918 ORTHO05D004494 2.9e-08 63.2 38 86.8
Oeu040442.1 Olea europaea HOM05D003918 ORTHO05D004494 4.9e-08 62.4 38 84.2
AUR62041324 Chenopodium quinoa HOM05D003918 ORTHO05D004494 6.4e-08 62.0 38 84.2
Actinidia03687 Actinidia chinensis HOM05D003918 ORTHO05D004494 8.4e-08 61.6 40 82.5
Dinv16240 Davidia involucrata HOM05D003918 ORTHO05D004494 8.4e-08 61.6 39 82.1
Dinv29385 Davidia involucrata HOM05D003918 ORTHO05D004494 8.4e-08 61.6 38 84.2
Eucgr.J00392 Eucalyptus grandis HOM05D003918 ORTHO05D004494 8.4e-08 61.6 39 82.1
Pp3c14_11680 Physcomitrium patens HOM05D003918 ORTHO05D004494 8.4e-08 61.6 39 79.5
Pp3c2_6200 Physcomitrium patens HOM05D003918 ORTHO05D004494 8.4e-08 61.6 39 79.5
unitig_899.g14962 Utricularia gibba HOM05D003918 ORTHO05D004494 8.4e-08 61.6 38 84.2
CSS0003214 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
CSS0025262 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
CSS0028017 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
CSS0049251 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
CANSAT64G2716 Cannabis sativa HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
CiPaw.13G144800 Carya illinoinensis HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
CiPaw.14G106800 Carya illinoinensis HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
Ca_10762_v3 Cicer arietinum L. HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
Cc01_g10200 Coffea canephora HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
COL.COLO4_19215 Corchorus olitorius HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
DCAR_018757 Daucus carota HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
Duzib168G2331 Durio zibethinus HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
Glyma.11G192100 Glycine max HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
Glyma.12G082300 Glycine max HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
Gohir.A05G085800 Gossypium hirsutum HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
Gohir.D05G087700 Gossypium hirsutum HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
Gorai.009G089700 Gossypium raimondii HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
Hma1.2p1_0051F.1_g029570 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
Lj3g0024072 Lotus japonicus HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
Lalb_Chr01g0004631 Lupinus albus HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
Medtr4g057040 Medicago truncatula HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
Oeu007724.1 Olea europaea HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
Os03g0146300 Oryza sativa ssp. japonica HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
Phvul.011G086900 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
Rhsim13G0101600 Rhododendron simsii HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
Sc21g0004230 Simmondsia chinensis HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
Sc21g0004490 Simmondsia chinensis HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
Thecc.09G297000 Theobroma cacao HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
TPR.G31695 Trifolium pratense HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
TWI79G0503 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
TWI79G0939 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
TAR633G2652 Trochodendron aralioides HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
vmacro03250 Vaccinium macrocarpon HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
HPP92_026243 Vanilla planifolia HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
Zm00001eb402980 Zea mays HOM05D003918 ORTHO05D004494 1.1e-07 61.2 38 84.2
Ah.01g016010 Amaranthus hybridus HOM05D003918 ORTHO05D004494 1.4e-07 60.8 38 84.2
FAN25G0673 Fragaria x ananassa HOM05D003918 ORTHO05D004494 1.4e-07 60.8 38 81.6
SGA_v2.0_scaffold50G18575 Striga asiatica HOM05D003918 ORTHO05D004494 1.4e-07 60.8 38 84.2
Hund25263 Selenicereus undatus HOM05D000940 ORTHO05D000782 1.9e-07 60.5 39 71.8
CAN.G546.56 Capsicum annuum HOM05D003918 ORTHO05D004494 2.4e-07 60.1 38 81.6
CDE02G4651 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 2.4e-07 60.1 38 81.6
CDE09G0194 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 2.4e-07 60.1 38 81.6
Ciclev10029696m.g Citrus clementina HOM05D003918 ORTHO05D004494 2.4e-07 60.1 38 81.6
FvH4_3g30520 Fragaria vesca HOM05D003918 ORTHO05D004494 2.4e-07 60.1 38 81.6
FAN11G2739 Fragaria x ananassa HOM05D003918 ORTHO05D004494 2.4e-07 60.1 38 81.6
FAN21G0274 Fragaria x ananassa HOM05D003918 ORTHO05D004494 2.4e-07 60.1 38 81.6
HanXRQChr11g0346091 Helianthus annuus HOM05D003918 ORTHO05D004494 2.4e-07 60.1 39 79.5
Manes.04G012300 Manihot esculenta HOM05D003918 ORTHO05D004494 2.4e-07 60.1 38 81.6
Manes.11G152900 Manihot esculenta HOM05D003918 ORTHO05D004494 2.4e-07 60.1 38 81.6
Nitab4.5_0000173g0230 Nicotiana tabacum HOM05D003918 ORTHO05D004494 2.4e-07 60.1 38 81.6
Oeu008363.1 Olea europaea HOM05D003918 ORTHO05D004494 2.4e-07 60.1 38 81.6
PSO339G4781 Papaver somniferum HOM05D003918 ORTHO05D004494 2.4e-07 60.1 38 81.6
Peaxi162Scf00983g00019 Petunia axillaris HOM05D003918 ORTHO05D004494 2.4e-07 60.1 38 81.6
QL01p014884 Quercus lobata HOM05D003918 ORTHO05D004494 2.4e-07 60.1 38 81.6
RcHm_v2.0_Chr5g0056481 Rosa chinensis HOM05D003918 ORTHO05D004494 2.4e-07 60.1 38 81.6
Sed0005005 Sechium edule HOM05D003918 ORTHO05D004494 2.4e-07 60.1 38 81.6
Sopen11g026220 Solanum pennellii HOM05D003918 ORTHO05D004494 2.4e-07 60.1 38 81.6
PGSC0003DMG402000458 Solanum tuberosum HOM05D003918 ORTHO05D004494 2.4e-07 60.1 38 81.6
Aa31LG5G8120 Aethionema arabicum HOM05D003918 ORTHO05D004494 3.2e-07 59.7 38 81.6
AL4G22250 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 3.2e-07 59.7 38 81.6
AT2G27960 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 3.2e-07 59.7 38 81.6
Haze_03482 Corylus avellana HOM05D003918 ORTHO05D004494 3.2e-07 59.7 38 81.6
ECA248G3596 Erigeron canadensis HOM05D003918 ORTHO05D004494 3.2e-07 59.7 38 81.6
Lj1A213T32 Lonicera japonica HOM05D003918 ORTHO05D004494 3.2e-07 59.7 38 81.6
MBI17_g16530_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 3.2e-07 59.7 38 81.6
PGR119G0927 Punica granatum HOM05D003918 ORTHO05D004494 3.2e-07 59.7 38 81.6
Rhsim01G0210200 Rhododendron simsii HOM05D003918 ORTHO05D004494 3.2e-07 59.7 38 81.6
Sabra09G0001700 Salix brachista HOM05D003918 ORTHO05D004494 3.2e-07 59.7 38 81.6
THA.LOC104815736 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 3.2e-07 59.7 38 81.6
THA.LOC104826394 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 3.2e-07 59.7 38 78.9
AUR62005740 Chenopodium quinoa HOM05D000940 ORTHO05D000782 4.2e-07 59.3 45 62.2
DCAR_015501 Daucus carota HOM05D003918 ORTHO05D004494 4.2e-07 59.3 38 81.6
Migut.D02301 Erythranthe guttata HOM05D003918 ORTHO05D004494 4.2e-07 59.3 38 81.6
Migut.N02540 Erythranthe guttata HOM05D003918 ORTHO05D004494 4.2e-07 59.3 38 81.6
Gohir.A07G105200 Gossypium hirsutum HOM05D003918 ORTHO05D004494 4.2e-07 59.3 38 81.6
Gohir.D07G109300 Gossypium hirsutum HOM05D003918 ORTHO05D004494 4.2e-07 59.3 38 81.6
Gorai.001G117400 Gossypium raimondii HOM05D003918 ORTHO05D004494 4.2e-07 59.3 38 81.6
Psat0ss2518g0280 Pisum sativum HOM05D003918 ORTHO05D004494 4.2e-07 59.3 38 81.6
TWI31G0950 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 4.2e-07 59.3 38 81.6
TAR623G0966 Trochodendron aralioides HOM05D003918 ORTHO05D004494 4.2e-07 59.3 38 81.6
Actinidia07191 Actinidia chinensis HOM05D001217 ORTHO05D004494 5.4e-07 58.9 38 81.6
Aqoxy1G01058 Aquilegia oxysepala HOM05D003918 ORTHO05D004494 5.4e-07 58.9 38 78.9
Cpa.g.sc47.8 Carica papaya HOM05D003918 ORTHO05D004494 5.4e-07 58.9 38 78.9
ClCG02G021690 Citrullus lanatus HOM05D003918 ORTHO05D004494 5.4e-07 58.9 38 81.6
MELO3C026958.2 Cucumis melo HOM05D003918 ORTHO05D004494 5.4e-07 58.9 38 81.6
Nn6g35195 Nelumbo nucifera HOM05D003918 ORTHO05D004494 5.4e-07 58.9 37 83.8
PSO339G2710 Papaver somniferum HOM05D003918 ORTHO05D004494 5.4e-07 58.9 38 78.9
PSO801G0480 Papaver somniferum HOM05D003918 ORTHO05D004494 5.4e-07 58.9 38 78.9
Prupe.6G113800 Prunus persica HOM05D003918 ORTHO05D004494 5.4e-07 58.9 38 81.6
Hund00834 Selenicereus undatus HOM05D003918 ORTHO05D004494 5.4e-07 58.9 38 81.6
BcaB03g11846 Brassica carinata HOM05D003918 ORTHO05D004494 7.1e-07 58.5 38 78.9
BcaB06g28178 Brassica carinata HOM05D003918 ORTHO05D004494 7.1e-07 58.5 39 74.4
Haze_23526 Corylus avellana HOM05D001217 ORTHO05D001097 7.1e-07 58.5 50 66.0
ECA233G3711 Erigeron canadensis HOM05D003918 ORTHO05D004494 7.1e-07 58.5 38 78.9
Thhalv10017487m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 7.1e-07 58.5 38 78.9
HanXRQChr01g0019451 Helianthus annuus HOM05D003918 ORTHO05D004494 7.1e-07 58.5 38 78.9
Lsat_1_v5_gn_1_64981 Lactuca sativa HOM05D003918 ORTHO05D004494 7.1e-07 58.5 38 78.9
Lsat_1_v5_gn_6_43541 Lactuca sativa HOM05D003918 ORTHO05D004494 7.1e-07 58.5 38 78.9
Nitab4.5_0003880g0020 Nicotiana tabacum HOM05D003918 ORTHO05D004494 7.1e-07 58.5 36 80.6
Oeu000602.1 Olea europaea HOM05D003918 ORTHO05D004494 7.1e-07 58.5 38 78.9
Oeu007309.2 Olea europaea HOM05D003918 ORTHO05D004494 7.1e-07 58.5 38 78.9
Potri.009G004000 Populus trichocarpa HOM05D003918 ORTHO05D004494 7.1e-07 58.5 38 78.9
AL4G22230 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 9.3e-07 58.2 39 74.4
AT2G27970 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 9.3e-07 58.2 39 74.4
Carub.0004s0873 Capsella rubella HOM05D003918 ORTHO05D004494 9.3e-07 58.2 39 74.4
Thhalv10017678m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 9.3e-07 58.2 40 72.5
Nn2g13876 Nelumbo nucifera HOM05D003918 ORTHO05D004494 9.3e-07 58.2 38 78.9
SEGI_17224 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 9.3e-07 58.2 38 76.3
TAR369G0366 Trochodendron aralioides HOM05D003918 ORTHO05D004494 9.3e-07 58.2 38 78.9
GSVIVG01031454001 Vitis vinifera HOM05D003918 ORTHO05D004494 9.3e-07 58.2 38 81.6
CARHR120680 Cardamine hirsuta HOM05D003918 ORTHO05D004494 1.2e-06 57.8 38 76.3
ClCG01G013880 Citrullus lanatus HOM05D003918 ORTHO05D004494 1.2e-06 57.8 38 78.9
FAN16G1510 Fragaria x ananassa HOM05D003918 ORTHO05D004494 1.2e-06 57.8 44 70.5
MD03G1128000 Malus domestica HOM05D003918 ORTHO05D004494 1.2e-06 57.8 38 78.9
MD11G1149400 Malus domestica HOM05D003918 ORTHO05D004494 1.2e-06 57.8 38 78.9
AUR62028821 Chenopodium quinoa HOM05D000940 ORTHO05D000782 1.6e-06 57.4 45 60.0
Lalb_Chr19g0136871 Lupinus albus HOM05D003918 ORTHO05D004494 1.6e-06 57.4 38 78.9
Sp4g10790 Schrenkiella parvula HOM05D003918 ORTHO05D004494 1.6e-06 57.4 38 76.3
ATR0043G026 Amborella trichopoda HOM05D003918 ORTHO05D004494 2.1e-06 57.0 38 76.3
BcaC02g08219 Brassica carinata HOM05D003918 ORTHO05D004494 2.1e-06 57.0 39 69.2
A04p21230 Brassica napus HOM05D003918 ORTHO05D004494 2.1e-06 57.0 39 69.2
C04p57080 Brassica napus HOM05D003918 ORTHO05D004494 2.1e-06 57.0 39 69.2
BolC4t27242H Brassica oleracea HOM05D003918 ORTHO05D004494 2.1e-06 57.0 39 69.2
CAN.G246.3 Capsicum annuum HOM05D003918 ORTHO05D004494 2.1e-06 57.0 38 78.9
CARHR120670 Cardamine hirsuta HOM05D003918 ORTHO05D004494 2.1e-06 57.0 38 76.3
SalBow6G1569 Salvia bowleyana HOM05D003918 ORTHO05D004494 2.1e-06 57.0 38 78.9
Carub.0004s0872 Capsella rubella HOM05D003918 ORTHO05D004494 2.7e-06 56.6 38 78.9
SalBow3G4245 Salvia bowleyana HOM05D003918 ORTHO05D004494 2.7e-06 56.6 38 78.9
Eucgr.B03920 Eucalyptus grandis HOM05D003918 ORTHO05D004494 3.5e-06 56.2 36 80.6
Mapoly0001s0011 Marchantia polymorpha HOM05D003918 ORTHO05D004494 3.5e-06 56.2 34 82.4
MCO11G605 Micromonas commoda HOM05D003918 ORTHO05D004494 3.5e-06 56.2 39 71.8
PGR102G3373 Punica granatum HOM05D003918 ORTHO05D004494 3.5e-06 56.2 38 78.9
Zm00001eb003750 Zea mays HOM05D003918 ORTHO05D004494 3.5e-06 56.2 38 76.3
Actinidia24153 Actinidia chinensis HOM05D003918 ORTHO05D004494 4.6e-06 55.8 38 78.9
BcaC01g00919 Brassica carinata HOM05D003918 ORTHO05D004494 4.6e-06 55.8 38 73.7
A08p17020 Brassica napus HOM05D003918 ORTHO05D004494 4.6e-06 55.8 38 73.7
C03p85930 Brassica napus HOM05D003918 ORTHO05D004494 4.6e-06 55.8 39 71.8
BraA08t33664Z Brassica rapa HOM05D003918 ORTHO05D004494 4.6e-06 55.8 38 73.7
MELO3C004864.2 Cucumis melo HOM05D003918 ORTHO05D004494 4.6e-06 55.8 40 75.0
CsaV3_1G014150 Cucumis sativus L. HOM05D003918 ORTHO05D004494 4.6e-06 55.8 38 78.9
Glyma.12G083700 Glycine max HOM05D003918 ORTHO05D004494 4.6e-06 55.8 38 73.7
Gohir.A02G090001 Gossypium hirsutum HOM05D003918 ORTHO05D004494 4.6e-06 55.8 52 63.5
Sed0024739 Sechium edule HOM05D003918 ORTHO05D004494 4.6e-06 55.8 38 78.9
AagrBONN_evm.TU.Sc2ySwM_117.701 Anthoceros agrestis HOM05D005424 ORTHO05D006726 7.8e-06 55.1 38 73.7
PGSC0003DMG400018822 Solanum tuberosum HOM05D003918 ORTHO05D004494 7.8e-06 55.1 38 78.9


User provided reference genes

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