Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g226230 Amaranthus hybridus HOM05D003776 ORTHO05D004459 0.0e+00 2409.8 1235 100.0
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 1787.7 1212 77.1
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 1749.6 1215 75.1
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 1728.8 1215 74.4
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1611.7 1210 69.8
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 0.0e+00 1563.5 1213 68.3
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 0.0e+00 1554.7 1206 66.3
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 0.0e+00 1526.5 1204 66.4
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 0.0e+00 1522.3 1206 65.3
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 0.0e+00 1522.3 1213 65.2
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 0.0e+00 1521.9 1225 65.0
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 0.0e+00 1517.7 1205 64.4
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 0.0e+00 1515.4 1214 64.5
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 0.0e+00 1513.8 1188 65.4
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 0.0e+00 1507.3 1213 64.0
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1506.1 1212 64.9
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 0.0e+00 1503.0 1213 65.0
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 0.0e+00 1500.7 1214 64.8
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 0.0e+00 1498.0 1194 64.9
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 1498.0 1194 64.9
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 0.0e+00 1497.3 1196 63.4
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 1490.3 1194 64.7
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 0.0e+00 1489.6 1194 64.9
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 0.0e+00 1487.6 1293 60.7
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 0.0e+00 1480.7 1205 63.2
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 0.0e+00 1476.8 1220 63.9
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 0.0e+00 1475.3 1216 63.0
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 0.0e+00 1473.0 1202 62.8
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 0.0e+00 1472.2 1215 62.5
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 1471.8 1201 63.4
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 1466.1 1201 63.5
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 1465.7 1196 63.1
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 0.0e+00 1462.2 1212 62.5
COL.COLO4_35084 Corchorus olitorius HOM05D003776 ORTHO05D004459 0.0e+00 1461.4 1209 63.6
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 0.0e+00 1461.0 1198 62.7
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 0.0e+00 1458.7 1246 62.4
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 0.0e+00 1458.0 1204 63.5
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 0.0e+00 1456.8 1228 63.1
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 0.0e+00 1454.9 1213 62.5
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 1454.9 1194 63.5
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 0.0e+00 1452.6 1204 63.2
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 0.0e+00 1448.0 1200 62.2
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 0.0e+00 1442.6 1193 62.7
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 0.0e+00 1437.9 1195 62.4
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1437.9 1211 62.0
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 0.0e+00 1429.1 1199 62.0
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 0.0e+00 1426.0 1214 61.4
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 0.0e+00 1425.6 1206 61.7
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 0.0e+00 1415.6 1187 62.6
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 1412.5 1200 61.8
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 0.0e+00 1411.4 1394 56.5
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 1406.3 1235 61.1
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 0.0e+00 1404.8 1265 60.1
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 1401.3 1218 60.4
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 0.0e+00 1399.8 1224 60.9
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 0.0e+00 1396.3 1188 60.8
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 1394.4 1220 60.3
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 0.0e+00 1392.9 1187 62.2
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 0.0e+00 1376.7 1188 59.9
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 0.0e+00 1370.9 1216 58.5
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 0.0e+00 1363.6 1236 58.3
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 0.0e+00 1350.9 1218 57.6
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 0.0e+00 1348.6 1190 58.3
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 0.0e+00 1347.8 1217 57.0
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 0.0e+00 1345.5 1217 57.6
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 0.0e+00 1343.6 1219 56.8
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 0.0e+00 1343.2 1188 59.3
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 0.0e+00 1335.9 1218 57.4
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 0.0e+00 1328.2 1236 56.6
arahy.Tifrunner.gnm1.ann1.GK8SHH Arachis hypogaea HOM05D003776 ORTHO05D004459 0.0e+00 1322.8 1228 57.2
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 0.0e+00 1313.1 1571 48.5
ATR0322G072 Amborella trichopoda HOM05D003776 ORTHO05D004459 0.0e+00 1307.0 1205 56.9
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 1303.5 1218 56.5
Oeu055885.1 Olea europaea HOM05D003776 ORTHO05D004459 0.0e+00 1302.3 1202 58.2
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 1295.8 1220 56.3
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 0.0e+00 1291.2 1221 56.3
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 0.0e+00 1262.3 1038 63.6
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 0.0e+00 1251.5 1188 55.8
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 0.0e+00 1224.5 1209 53.9
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 0.0e+00 1159.8 963 63.3
Lalb_Chr08g0234831 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1147.5 896 64.2
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 0.0e+00 1079.3 1213 47.7
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 2.4e-309 1065.8 908 61.9
Pp3c4_20350 Physcomitrium patens HOM05D003776 ORTHO05D004459 3.0e-307 1058.9 1203 46.7
AagrBONN_evm.TU.Sc2ySwM_228.87 Anthoceros agrestis HOM05D003776 ORTHO05D004459 3.4e-295 1018.8 1196 46.7
CDE02G1439 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 2.1e-276 956.4 836 58.1
SMO347G0235 Selaginella moellendorffii HOM05D003776 ORTHO05D004459 6.2e-273 944.9 1211 42.7
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 1.3e-270 937.2 833 61.3
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 7.1e-269 931.4 795 62.3
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 6.1e-268 928.3 775 62.3
unitig_26.g8982 Utricularia gibba HOM05D003776 ORTHO05D004459 4.3e-258 895.6 838 54.9
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 1.8e-251 873.6 883 52.7
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 2.2e-241 840.1 713 62.7
HPP92_008649 Vanilla planifolia HOM05D003776 ORTHO05D004459 2.6e-234 816.6 832 51.7
RcHm_v2.0_Chr2g0152361 Rosa chinensis HOM05D003776 ORTHO05D004459 1.6e-212 744.2 1203 40.7
CBR_g37692 Chara braunii HOM05D003776 ORTHO05D004459 2.9e-209 733.4 1212 36.6
RcHm_v2.0_Chr2g0152391 Rosa chinensis HOM05D003776 ORTHO05D004459 5.6e-205 719.2 1203 39.8
FvH4_6g38790 Fragaria vesca HOM05D003776 ORTHO05D004459 1.4e-195 688.0 1052 41.5
Pp3c20_13260 Physcomitrium patens HOM05D003776 ORTHO05D004459 3.0e-190 670.2 1075 38.6
Pp3c23_3420 Physcomitrium patens HOM05D003776 ORTHO05D004459 1.6e-188 664.5 1062 37.3
Os02g0202250 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 1.1e-144 518.8 488 55.7
Os02g0202300 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 1.7e-121 441.8 400 55.8
Cpa.g.c32453 Carica papaya HOM05D003776 ORTHO05D004459 5.2e-102 377.1 299 65.2
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 8.9e-102 376.3 374 54.8
HPP92_008667 Vanilla planifolia HOM05D003776 ORTHO05D004459 3.4e-93 347.8 483 42.9
CiPaw.03G243900 Carya illinoinensis HOM05D003776 ORTHO05D004459 1.1e-88 332.8 230 72.6
HanXRQChr12g0373951 Helianthus annuus HOM05D003776 ORTHO05D004459 1.6e-87 328.9 329 52.6
HanXRQChr04g0119281 Helianthus annuus HOM05D003776 ORTHO05D004459 5.4e-83 313.9 330 51.8
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 8.6e-81 306.6 375 48.3
FAN19G2182 Fragaria x ananassa HOM05D003776 ORTHO05D004459 1.4e-75 289.3 334 48.5
Hma1.2p1_0018F.1_g012440 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 3.5e-74 284.6 255 62.4
Cpa.g.sc75.31 Carica papaya HOM05D003776 ORTHO05D004459 4.3e-72 277.7 281 53.4
QL02p088302 Quercus lobata HOM05D003776 ORTHO05D004459 9.9e-69 266.5 176 76.1
Duzib187G1323 Durio zibethinus HOM05D003776 ORTHO05D004459 1.2e-61 243.0 275 52.4
SEGI_08250 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 3.5e-58 231.5 180 62.8
SHI03382 Sapria himalayana HOM05D003776 ORTHO05D004459 4.2e-51 208.0 211 55.9
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 5.5e-51 207.6 224 52.2
SEGI_34338 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 6.0e-50 204.1 251 43.0
RcHm_v2.0_Chr5g0007291 Rosa chinensis HOM05D003776 ORTHO05D004459 1.8e-49 202.6 331 40.5
Peaxi162Scf00574g00927 Petunia axillaris HOM05D003776 ORTHO05D004459 2.6e-45 188.7 355 39.4
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 3.9e-41 174.9 125 69.6
RcHm_v2.0_Chr5g0007331 Rosa chinensis HOM05D003776 ORTHO05D004459 3.9e-41 174.9 400 32.8
PRCOL_00003394 Prasinoderma coloniale HOM05D003776 ORTHO05D004459 2.7e-34 152.1 1123 22.4
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 8.7e-33 147.1 97 73.2
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 1.9e-32 146.0 183 46.4
SEGI_13925 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 3.3e-32 145.2 122 57.4
Cpa.g.c42453 Carica papaya HOM05D003776 ORTHO05D004459 2.6e-29 135.6 82 74.4
SHI03385 Sapria himalayana HOM05D003776 ORTHO05D004459 1.0e-28 133.7 117 59.0
MCO11G810 Micromonas commoda HOM05D003776 ORTHO05D004459 2.9e-28 132.1 421 28.3
Cpa.g.c37328 Carica papaya HOM05D003776 ORTHO05D004459 3.3e-24 118.6 75 76.0
Cpa.g.sc75.37 Carica papaya HOM05D003776 ORTHO05D004459 7.7e-21 107.5 81 65.4
HPP92_008668 Vanilla planifolia HOM05D003776 ORTHO05D004459 1.4e-19 103.2 254 31.5
Cre13.g578100 Chlamydomonas reinhardtii HOM05D003776 ORTHO05D004459 3.2e-19 102.1 1055 21.2
ECA246G1679 Erigeron canadensis HOM05D003776 ORTHO05D004459 9.7e-16 90.5 62 69.4
RcHm_v2.0_Chr5g0007211 Rosa chinensis HOM05D003776 ORTHO05D004459 9.7e-16 90.5 57 75.4
CBR_g76107 Chara braunii HOM05D003776 ORTHO05D004459 4.7e-10 71.6 64 50.0
SalBow1G5037 Salvia bowleyana HOM05D001898 ORTHO05D002580 4.7e-10 71.6 37 83.8
SEGI_04425 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 4.7e-10 71.6 119 36.1
MBI13_g38968_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 1.4e-09 70.1 44 72.7
PSO478G0731 Papaver somniferum HOM05D003776 ORTHO05D004459 2.3e-09 69.3 57 61.4
CAN.G1024.1 Capsicum annuum HOM05D003776 ORTHO05D002238 5.7e-08 64.7 108 44.4
SalBow8G3232 Salvia bowleyana HOM05D002512 ORTHO05D002660 7.5e-08 64.3 34 82.4
SEGI_27908 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 2.2e-07 62.8 71 45.1
MBI06_g09275_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 1.4e-06 60.1 41 68.3
Sed0006485 Sechium edule HOM05D003776 ORTHO05D004459 4.1e-06 58.5 49 63.3


User provided reference genes

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