Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.09g226220 Amaranthus hybridus HOM05D003776 ORTHO05D004459 0.0e+00 1320.8 695 100.0
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 1148.3 712 85.0
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 1088.2 693 83.7
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 2.3e-301 1038.5 693 78.5
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 4.4e-292 1007.7 693 79.1
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 3.3e-287 991.5 694 74.5
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 2.8e-262 908.7 695 68.5
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 3.6e-262 908.3 692 69.1
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 3.2e-258 895.2 695 67.3
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 8.7e-256 887.1 694 66.0
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 5.6e-255 884.4 694 67.0
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 5.6e-255 884.4 694 66.9
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 9.6e-255 883.6 701 65.3
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 3.7e-254 881.7 695 66.3
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 1.1e-253 880.2 694 66.7
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 2.4e-253 879.0 695 66.9
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 4.0e-253 878.2 695 66.6
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 4.0e-253 878.2 692 66.6
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 3.4e-252 875.2 692 66.2
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 4.5e-252 874.8 708 65.7
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 1.0e-251 873.6 693 66.2
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 9.3e-250 867.1 695 65.3
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 2.1e-249 865.9 668 66.9
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 4.6e-249 864.8 696 66.2
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 7.9e-249 864.0 695 65.2
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 2.1e-246 855.9 693 64.6
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 1.8e-245 852.8 695 64.9
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 4.1e-245 851.7 692 64.2
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 4.5e-244 848.2 694 64.4
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 7.6e-244 847.4 690 64.8
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 1.0e-243 847.0 691 65.1
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 1.3e-243 846.7 693 64.1
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 3.2e-242 842.0 693 63.8
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 4.2e-242 841.6 689 63.6
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 5.5e-242 841.3 693 63.8
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 5.5e-242 841.3 695 63.7
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 7.1e-242 840.9 689 63.7
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 1.6e-241 839.7 695 62.7
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 1.6e-241 839.7 692 63.9
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 2.7e-241 839.0 692 64.2
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 7.9e-241 837.4 693 63.2
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 1.0e-240 837.0 693 63.5
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 1.3e-240 836.6 694 63.8
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 3.0e-240 835.5 696 63.1
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 5.1e-240 834.7 706 62.0
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 8.7e-240 833.9 695 63.7
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 1.1e-239 833.6 695 64.3
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 1.1e-239 833.6 692 63.2
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 1.9e-239 832.8 693 62.8
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 4.3e-239 831.6 695 62.0
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 5.7e-239 831.2 695 64.9
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 1.3e-238 830.1 691 64.4
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 2.8e-238 828.9 695 62.4
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 4.1e-237 825.1 696 62.4
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 5.3e-237 824.7 696 64.2
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 6.9e-237 824.3 695 63.0
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 6.5e-235 817.8 695 60.7
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 1.1e-234 817.0 751 59.8
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 1.2e-233 813.5 693 61.3
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 2.1e-233 812.8 696 63.2
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 1.1e-231 807.0 694 61.8
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 1.5e-231 806.6 699 61.8
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 6.3e-230 801.2 731 59.6
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 5.3e-229 798.1 689 61.7
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 7.7e-228 794.3 690 61.3
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 7.7e-228 794.3 690 61.7
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 1.0e-227 793.9 692 61.1
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 1.1e-226 790.4 689 60.7
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 3.9e-224 781.9 690 60.6
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 3.9e-224 781.9 822 52.6
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 1.1e-223 780.4 690 60.4
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 8.2e-222 774.2 693 59.0
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 1.3e-219 766.9 690 59.3
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 2.2e-219 766.1 691 59.0
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 2.2e-219 766.1 691 59.0
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 1.2e-217 760.4 707 58.1
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 3.7e-214 748.8 689 58.3
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 1.0e-211 740.7 693 59.0
CAN.G816.2 Capsicum annuum HOM05D003776 ORTHO05D004459 1.7e-203 713.4 607 61.3
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 1.7e-198 696.8 664 57.2
Os02g0202250 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 9.8e-191 671.0 692 52.6
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 3.9e-187 659.1 699 53.5
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 1.8e-184 650.2 689 52.8
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 7.8e-180 634.8 550 60.7
HPP92_008667 Vanilla planifolia HOM05D003776 ORTHO05D004459 4.3e-170 602.4 685 49.5
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 2.8e-153 546.6 695 47.6
Pp3c4_20350 Physcomitrium patens HOM05D003776 ORTHO05D004459 3.6e-153 546.2 701 44.2
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 2.1e-148 530.4 545 52.5
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 1.9e-138 497.3 713 41.2
AagrBONN_evm.TU.Sc2ySwM_228.87 Anthoceros agrestis HOM05D003776 ORTHO05D004459 2.8e-137 493.4 711 41.9
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 2.8e-137 493.4 384 65.6
Hma1.2p1_0018F.1_g012430 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 5.7e-130 469.2 418 60.8
SMO347G0235 Selaginella moellendorffii HOM05D003776 ORTHO05D004459 1.4e-128 464.5 703 40.7
ATR0322G072 Amborella trichopoda HOM05D003776 ORTHO05D004459 1.0e-110 405.2 377 57.6
Duzib187G1323 Durio zibethinus HOM05D003776 ORTHO05D004459 7.4e-106 389.0 383 56.1
CBR_g37692 Chara braunii HOM05D003776 ORTHO05D004459 1.8e-104 384.4 730 37.1
Cpa.g.sc75.30 Carica papaya HOM05D003776 ORTHO05D004459 4.1e-104 383.3 410 53.2
SEGI_34338 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 2.7e-100 370.5 393 52.4
arahy.Tifrunner.gnm1.ann1.6DBV70 Arachis hypogaea HOM05D003776 ORTHO05D004459 1.8e-99 367.9 420 51.7
arahy.Tifrunner.gnm1.ann1.GK8SHH Arachis hypogaea HOM05D003776 ORTHO05D004459 1.5e-85 321.6 232 70.3
Hma1.2p1_2368F.1_g320720 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 2.5e-85 320.9 314 58.3
Oeu055886.1 Olea europaea HOM05D003776 ORTHO05D004459 9.8e-82 308.9 296 58.4
Oeu055885.1 Olea europaea HOM05D003776 ORTHO05D004459 1.5e-77 295.0 225 66.7
RcHm_v2.0_Chr2g0152361 Rosa chinensis HOM05D003776 ORTHO05D004459 2.5e-69 267.7 400 45.5
Ca_29538_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 5.6e-69 266.5 264 56.1
HPP92_008648 Vanilla planifolia HOM05D003776 ORTHO05D004459 6.4e-65 253.1 229 57.2
Lsat_1_v5_gn_7_7080 Lactuca sativa HOM05D003776 ORTHO05D004459 8.3e-65 252.7 255 56.9
Cpa.g.sc75.31 Carica papaya HOM05D003776 ORTHO05D004459 1.3e-57 228.8 198 61.6
Lsat_1_v5_gn_3_39400 Lactuca sativa HOM05D003776 ORTHO05D004459 1.9e-53 214.9 216 57.4
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 7.3e-53 213.0 226 51.8
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 7.3e-53 213.0 226 51.8
RcHm_v2.0_Chr2g0152391 Rosa chinensis HOM05D003776 ORTHO05D004459 3.1e-51 207.6 300 46.3
FvH4_6g38782 Fragaria vesca HOM05D003776 ORTHO05D004459 1.7e-49 201.8 388 38.7
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 3.9e-46 190.7 255 44.3
Actinidia07427 Actinidia chinensis HOM05D003776 ORTHO05D004459 7.8e-39 166.4 168 56.0
Psat7g006280 Pisum sativum HOM05D003776 ORTHO05D004459 5.3e-35 153.7 126 63.5
ATR0322G028 Amborella trichopoda HOM05D003776 ORTHO05D004459 5.8e-34 150.2 171 50.3
RcHm_v2.0_Chr3g0479611 Rosa chinensis HOM05D003776 ORTHO05D004459 2.2e-25 121.7 96 64.6
MD16G1253500 Malus domestica HOM05D003776 ORTHO05D004459 2.1e-20 105.1 109 53.2
Lsat_1_v5_gn_5_62781 Lactuca sativa HOM05D003776 ORTHO05D004459 3.7e-20 104.4 279 29.0
ATR0322G071 Amborella trichopoda HOM05D003776 ORTHO05D004459 1.1e-19 102.8 81 63.0
arahy.Tifrunner.gnm1.ann1.HIW0J1 Arachis hypogaea HOM05D003776 ORTHO05D004459 1.0e-14 86.3 55 72.7
Actinidia07426 Actinidia chinensis HOM05D003776 ORTHO05D004459 1.1e-13 82.8 83 48.2
Prupe.1G010000 Prunus persica HOM05D003776 ORTHO05D004459 1.4e-08 65.9 91 45.1
RcHm_v2.0_Chr5g0007211 Rosa chinensis HOM05D003776 ORTHO05D004459 4.2e-08 64.3 101 42.6
SEGI_19045 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 7.2e-08 63.5 69 49.3
RcHm_v2.0_Chr5g0007271 Rosa chinensis HOM05D003776 ORTHO05D004459 4.6e-07 60.8 49 57.1
RcHm_v2.0_Chr5g0007071 Rosa chinensis HOM05D003776 ORTHO05D004459 6.1e-07 60.5 39 71.8


User provided reference genes

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