Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.08g221330 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.3e-282 975.7 487 100.0
Ah.02g117550 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.2e-99 367.9 429 47.1
Ah.08g219520 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.2e-54 218.4 425 33.2
Ah.05g173080 Amaranthus hybridus HOM05D008762 ORTHO05D011252 6.1e-46 189.5 350 36.0
Ah.03g144970 Amaranthus hybridus HOM05D008762 ORTHO05D011252 3.1e-42 177.2 351 30.2
Ah.01g013230 Amaranthus hybridus HOM05D008762 ORTHO05D011252 6.9e-42 176.0 383 31.1
Ah.02g118210 Amaranthus hybridus HOM05D008762 ORTHO05D011252 2.0e-41 174.5 362 31.2
Ah.13g066110 Amaranthus hybridus HOM05D008762 ORTHO05D011252 6.5e-40 169.5 351 31.9
Ah.11g041130 Amaranthus hybridus HOM05D008762 ORTHO05D011252 5.7e-36 156.4 441 27.4
Ah.12g060360 Amaranthus hybridus HOM05D008762 ORTHO05D011252 6.3e-35 152.9 206 43.2
Ah.06g186480 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.2e-33 148.7 419 29.4
Ah.03g145270 Amaranthus hybridus HOM05D008762 ORTHO05D011252 2.5e-31 141.0 393 28.5
Ah.05g171570 Amaranthus hybridus HOM05D008762 ORTHO05D011252 5.5e-31 139.8 147 45.6
Ah.05g173090 Amaranthus hybridus HOM05D008762 ORTHO05D011252 8.8e-29 132.5 115 53.0
Ah.07g198450 Amaranthus hybridus HOM05D008762 ORTHO05D011252 4.4e-28 130.2 115 57.4
Ah.15g098970 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.8e-26 124.8 223 32.3
Ah.04g161050 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.2e-25 122.1 285 28.8
Ah.10g026690 Amaranthus hybridus HOM05D008762 ORTHO05D011252 7.2e-23 112.8 195 36.9
Ah.07g201540 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.6e-22 111.7 254 31.9
Ah.07g196620 Amaranthus hybridus HOM05D008762 ORTHO05D031041 4.0e-21 107.1 256 30.1
Ah.16g108500 Amaranthus hybridus HOM05D008762 ORTHO05D011252 3.3e-20 104.0 222 30.6
Ah.14g081710 Amaranthus hybridus HOM05D008762 ORTHO05D011252 7.5e-20 102.8 155 40.0
Ah.08g219500 Amaranthus hybridus HOM05D008762 ORTHO05D011252 4.8e-19 100.1 185 31.9
Ah.10g037270 Amaranthus hybridus HOM05D005124 ORTHO05D005914 1.1e-18 99.0 157 37.6
Ah.06g184660 Amaranthus hybridus HOM05D008762 ORTHO05D011252 4.1e-18 97.1 115 40.0
Ah.11g045590 Amaranthus hybridus HOM05D000851 ORTHO05D003960 7.0e-18 96.3 209 31.6
Ah.15g100500 Amaranthus hybridus HOM05D008762 ORTHO05D011252 2.0e-17 94.7 136 38.2
Ah.09g226780 Amaranthus hybridus HOM05D008762 ORTHO05D011252 4.5e-17 93.6 175 34.9
Ah.06g183510 Amaranthus hybridus HOM05D008762 ORTHO05D011252 5.9e-17 93.2 116 44.0
Ah.11g040120 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.7e-16 91.7 127 38.6
Ah.12g063050 Amaranthus hybridus HOM05D000030 ORTHO05D000009 6.5e-16 89.7 139 38.8
Ah.05g174560 Amaranthus hybridus HOM05D008762 ORTHO05D011252 8.5e-16 89.4 130 37.7
Ah.10g026890 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.6e-14 85.1 172 27.9
Ah.04g156900 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.0e-13 82.4 174 32.2
Ah.10g026880 Amaranthus hybridus HOM05D008762 ORTHO05D011252 2.6e-12 77.8 97 40.2
CSS0018658 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 1.3e-11 75.5 155 34.2
COL.COLO4_36277 Corchorus olitorius HOM05D008263 ORTHO05D009583 2.8e-11 74.3 164 31.7
Ah.10g030760 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.1e-10 72.4 191 29.3
vmacro21928 Vaccinium macrocarpon HOM05D000086 ORTHO05D000431 1.8e-10 71.6 95 35.8
CSS0029903 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 4.1e-10 70.5 148 33.1
Ah.03g145050 Amaranthus hybridus HOM05D008762 ORTHO05D011252 5.4e-10 70.1 55 56.4
Actinidia04023 Actinidia chinensis HOM05D012898 ORTHO05D011057 1.6e-09 68.6 103 36.9
Sc14g0003540 Simmondsia chinensis HOM05D009209 ORTHO05D011057 3.5e-09 67.4 83 39.8
Actinidia23250 Actinidia chinensis HOM05D012898 ORTHO05D009356 4.5e-09 67.0 80 35.0
Sc21g0001740 Simmondsia chinensis HOM05D011136 ORTHO05D010856 5.9e-09 66.6 310 19.4
CSS0025679 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 3.8e-08 63.9 170 27.1
Lj4g0019865 Lotus japonicus HOM05D019244 ORTHO05D036501 3.8e-08 63.9 79 34.2
Sc22g0002690 Simmondsia chinensis HOM05D000043 ORTHO05D030613 3.8e-08 63.9 84 40.5
vmacro12740 Vaccinium macrocarpon HOM05D000625 ORTHO05D000467 3.8e-08 63.9 101 34.7
Actinidia12169 Actinidia chinensis HOM05D012898 ORTHO05D009356 5.0e-08 63.5 80 31.2
RhsimUnG0101100 Rhododendron simsii HOM05D008219 ORTHO05D009356 5.0e-08 63.5 110 29.1
Sc23g0004170 Simmondsia chinensis HOM05D006933 ORTHO05D009629 5.0e-08 63.5 206 25.2
EL10Ac5g10790 Beta vulgaris HOM05D008976 ORTHO05D011121 6.5e-08 63.2 161 26.7
CSS0042344 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 6.5e-08 63.2 127 33.9
Sc02g0004050 Simmondsia chinensis HOM05D006933 ORTHO05D009629 6.5e-08 63.2 104 31.7
Sc07g0006130 Simmondsia chinensis HOM05D009209 ORTHO05D009629 1.1e-07 62.4 80 35.0
Sc19g0006300 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.1e-07 62.4 293 22.5
Lj1g0026317 Lotus japonicus HOM05D008220 ORTHO05D010358 1.5e-07 62.0 377 22.0
Actinidia34105 Actinidia chinensis HOM05D003145 ORTHO05D003586 1.9e-07 61.6 89 33.7
Sc10g0004010 Simmondsia chinensis HOM05D031748 ORTHO05D011057 1.9e-07 61.6 62 45.2
CSS0016458 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 2.5e-07 61.2 149 28.2
COL.COLO4_16499 Corchorus olitorius HOM05D008263 ORTHO05D009583 2.5e-07 61.2 137 32.8
Sc15g0003590 Simmondsia chinensis HOM05D009209 ORTHO05D011057 2.5e-07 61.2 79 35.4
Actinidia11796 Actinidia chinensis HOM05D002604 ORTHO05D009356 3.3e-07 60.8 97 29.9
Medtr5g065250 Medicago truncatula HOM05D002777 ORTHO05D001516 3.3e-07 60.8 158 34.2
COL.COLO4_22653 Corchorus olitorius HOM05D008263 ORTHO05D009583 4.2e-07 60.5 120 33.3
Gorai.009G210200 Gossypium raimondii HOM05D038512 ORTHO05D015081 4.2e-07 60.5 85 37.6
HanXRQChr08g0227851 Helianthus annuus HOM05D000003 ORTHO05D000004 4.2e-07 60.5 241 25.3
Sc01g0000330 Simmondsia chinensis HOM05D009348 ORTHO05D010856 4.2e-07 60.5 80 37.5
Ah.04g158390 Amaranthus hybridus HOM05D008762 ORTHO05D011252 5.5e-07 60.1 118 33.9
Lj4g0013144 Lotus japonicus HOM05D008220 ORTHO05D010358 5.5e-07 60.1 106 32.1
Sc03g0005750 Simmondsia chinensis HOM05D009348 ORTHO05D011705 5.5e-07 60.1 95 32.6
EL10Ac5g11650 Beta vulgaris HOM05D008976 ORTHO05D011121 7.2e-07 59.7 161 23.6
COL.COLO4_12837 Corchorus olitorius HOM05D008263 ORTHO05D009583 7.2e-07 59.7 313 22.4
Duzib170G0053 Durio zibethinus HOM05D037386 ORTHO05D035091 9.5e-07 59.3 79 39.2
Oeu012922.1 Olea europaea HOM05D003264 ORTHO05D003276 9.5e-07 59.3 88 36.4
Sc14g0005700 Simmondsia chinensis HOM05D009209 ORTHO05D011057 9.5e-07 59.3 86 38.4
COL.COLO4_04627 Corchorus olitorius HOM05D008263 ORTHO05D009583 1.2e-06 58.9 121 29.8
COL.COLO4_05573 Corchorus olitorius HOM05D008263 ORTHO05D009583 1.2e-06 58.9 127 32.3
Sc14g0002620 Simmondsia chinensis HOM05D009209 ORTHO05D011705 1.2e-06 58.9 80 35.0
Actinidia24024 Actinidia chinensis HOM05D023450 ORTHO05D023249 1.6e-06 58.5 81 35.8
CSS0022791 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 1.6e-06 58.5 73 35.6
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 1.6e-06 58.5 73 35.6
CBR_g34604 Chara braunii HOM05D003264 ORTHO05D003276 1.6e-06 58.5 87 34.5
CSS0043481 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 2.1e-06 58.2 73 34.2
Phvul.001G152700 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 2.1e-06 58.2 240 27.5
Phvul.002G198900 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 2.1e-06 58.2 227 25.1
Sc05g0005650 Simmondsia chinensis HOM05D006933 ORTHO05D009629 2.1e-06 58.2 81 35.8
Sc18g0002450 Simmondsia chinensis HOM05D006933 ORTHO05D009629 2.1e-06 58.2 85 35.3
Sc23g0004070 Simmondsia chinensis HOM05D006933 ORTHO05D009629 2.1e-06 58.2 95 33.7
Atru.chr13.1199 Acer truncatum HOM05D003264 ORTHO05D003276 2.8e-06 57.8 87 36.8
Rhsim09G0042800 Rhododendron simsii HOM05D017214 ORTHO05D018100 2.8e-06 57.8 104 32.7
Rhsim13G0125400 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.8e-06 57.8 78 30.8
THA.LOC104804545 Tarenaya hassleriana HOM05D000428 ORTHO05D000582 2.8e-06 57.8 73 42.5
Atru.chr1.3562 Acer truncatum HOM05D000428 ORTHO05D000582 3.6e-06 57.4 81 38.3
Atru.chr5.2123 Acer truncatum HOM05D003264 ORTHO05D003276 3.6e-06 57.4 104 31.7
Actinidia10317 Actinidia chinensis HOM05D003264 ORTHO05D003276 3.6e-06 57.4 87 36.8
Actinidia21726 Actinidia chinensis HOM05D000428 ORTHO05D000582 3.6e-06 57.4 73 41.1
AUR62018901 Chenopodium quinoa HOM05D003264 ORTHO05D003276 3.6e-06 57.4 99 34.3
AUR62027748 Chenopodium quinoa HOM05D003264 ORTHO05D003276 3.6e-06 57.4 99 34.3
Ciclev10019644m.g Citrus clementina HOM05D001495 ORTHO05D001391 3.6e-06 57.4 79 35.4
HanXRQChr01g0005411 Helianthus annuus HOM05D003915 ORTHO05D005386 3.6e-06 57.4 238 24.8
Rhsim03G0015400 Rhododendron simsii HOM05D008219 ORTHO05D009356 3.6e-06 57.4 78 33.3
Hund16914 Selenicereus undatus HOM05D003264 ORTHO05D003276 3.6e-06 57.4 99 34.3
CANSAT56G4395 Cannabis sativa HOM05D000428 ORTHO05D000582 4.7e-06 57.0 77 41.6
COL.COLO4_32924 Corchorus olitorius HOM05D011882 ORTHO05D015081 4.7e-06 57.0 106 31.1
Gohir.A01G136601 Gossypium hirsutum HOM05D000003 ORTHO05D015081 4.7e-06 57.0 79 36.7
Actinidia30767 Actinidia chinensis HOM05D003264 ORTHO05D003276 6.1e-06 56.6 87 35.6
Actinidia32115 Actinidia chinensis HOM05D000428 ORTHO05D000582 6.1e-06 56.6 73 39.7
CSS0011997 Camellia sinensis var. sinensis HOM05D003264 ORTHO05D003276 6.1e-06 56.6 87 35.6
Ciclev10002266m.g Citrus clementina HOM05D003264 ORTHO05D003276 6.1e-06 56.6 87 34.5
Lj6g0008950 Lotus japonicus HOM05D019244 ORTHO05D036501 6.1e-06 56.6 101 30.7
LjContig00272g0003214 Lotus japonicus HOM05D019244 ORTHO05D036501 6.1e-06 56.6 101 30.7
Carub.0008s2499 Capsella rubella HOM05D003264 ORTHO05D003276 8.0e-06 56.2 104 30.8
Lalb_Chr04g0256551 Lupinus albus HOM05D003264 ORTHO05D003276 8.0e-06 56.2 118 29.7
Lalb_Chr17g0340171 Lupinus albus HOM05D003264 ORTHO05D003276 8.0e-06 56.2 118 28.8
Prupe.7G083500 Prunus persica HOM05D003264 ORTHO05D003276 8.0e-06 56.2 87 34.5
Rhsim01G0127900 Rhododendron simsii HOM05D008219 ORTHO05D009356 8.0e-06 56.2 63 38.1
vmacro16299 Vaccinium macrocarpon HOM05D000629 ORTHO05D000576 8.0e-06 56.2 241 24.5


User provided reference genes

Program Settings