Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.08g219870 Amaranthus hybridus HOM05D001415 ORTHO05D001075 4.7e-62 241.1 130 100.0
Ah.15g098480 Amaranthus hybridus HOM05D001415 ORTHO05D001075 8.0e-46 187.2 138 79.0
EL10Ac7g16050 Beta vulgaris HOM05D001415 ORTHO05D001075 2.9e-19 99.0 98 67.3
HanXRQChr01g0010481 Helianthus annuus HOM05D001415 ORTHO05D001075 1.2e-12 77.0 117 52.1
TWI31G0218 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 1.3e-11 73.6 93 57.0
TWI79G1693 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 4.9e-11 71.6 89 57.3
Sc21g0005940 Simmondsia chinensis HOM05D001415 ORTHO05D001075 8.4e-11 70.9 132 45.5
Sc12g0001300 Simmondsia chinensis HOM05D001415 ORTHO05D001075 3.2e-10 68.9 36 86.1
Oeu045612.1 Olea europaea HOM05D001415 ORTHO05D001075 7.1e-10 67.8 120 46.7
Gohir.A05G093900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 7.8e-09 64.3 123 43.9
Gohir.D05G094400 Gossypium hirsutum HOM05D001415 ORTHO05D001075 7.8e-09 64.3 123 43.9
Gorai.009G097500 Gossypium raimondii HOM05D001415 ORTHO05D001075 7.8e-09 64.3 123 43.9
Oeu053887.1 Olea europaea HOM05D001415 ORTHO05D001075 7.8e-09 64.3 127 45.7
CAN.G394.70 Capsicum annuum HOM05D018369 ORTHO05D001075 1.3e-08 63.5 121 43.8
Duzib168G2106 Durio zibethinus HOM05D001415 ORTHO05D001075 1.3e-08 63.5 126 43.7
COL.COLO4_18559 Corchorus olitorius HOM05D001415 ORTHO05D001075 1.7e-08 63.2 124 45.2
TPR.G5599 Trifolium pratense HOM05D001415 ORTHO05D001075 1.7e-08 63.2 45 64.4
BcaB06g28285 Brassica carinata HOM05D001415 ORTHO05D001075 3.9e-08 62.0 129 43.4
BcaB06g28286 Brassica carinata HOM05D001415 ORTHO05D001075 3.9e-08 62.0 129 43.4
TPR.G23565 Trifolium pratense HOM05D001415 ORTHO05D001075 5.1e-08 61.6 116 44.8
arahy.Tifrunner.gnm1.ann1.K7ANH9 Arachis hypogaea HOM05D001415 ORTHO05D001075 1.5e-07 60.1 37 70.3
Duzib150G0909 Durio zibethinus HOM05D001415 ORTHO05D001075 1.5e-07 60.1 122 42.6
MSTRG.21203 Avicennia marina HOM05D001415 ORTHO05D001075 1.9e-07 59.7 124 42.7
Lalb_Chr03g0026501 Lupinus albus HOM05D001415 ORTHO05D001075 1.9e-07 59.7 35 74.3
Medtr2g097570 Medicago truncatula HOM05D001415 ORTHO05D001075 1.9e-07 59.7 46 63.0
Thhalv10017949m.g Eutrema salsugineum HOM05D001415 ORTHO05D001075 2.5e-07 59.3 134 41.0
A04p22250 Brassica napus HOM05D008503 ORTHO05D001075 3.3e-07 58.9 117 46.2
BraA04t17777Z Brassica rapa HOM05D008503 ORTHO05D001075 3.3e-07 58.9 117 46.2
CANSAT80G1980 Cannabis sativa HOM05D001415 ORTHO05D001075 3.3e-07 58.9 38 57.9
Ciclev10030229m.g Citrus clementina HOM05D001415 ORTHO05D001075 3.3e-07 58.9 117 41.9
Thecc.09G317800 Theobroma cacao HOM05D001415 ORTHO05D001075 3.3e-07 58.9 123 43.1
Lalb_Chr19g0137921 Lupinus albus HOM05D001415 ORTHO05D001075 4.3e-07 58.5 121 42.1
Rhsim03G0133500 Rhododendron simsii HOM05D001415 ORTHO05D001075 4.3e-07 58.5 65 52.3
Lsat_1_v5_gn_5_169241 Lactuca sativa HOM05D001415 ORTHO05D001075 5.6e-07 58.2 118 41.5
Sed0002507 Sechium edule HOM05D001415 ORTHO05D001075 5.6e-07 58.2 38 65.8
THA.LOC104826316 Tarenaya hassleriana HOM05D008503 ORTHO05D001075 5.6e-07 58.2 125 40.8
Glyma.18G076400 Glycine max HOM05D001415 ORTHO05D001075 9.6e-07 57.4 74 52.7
Lalb_Chr01g0003531 Lupinus albus HOM05D008503 ORTHO05D001075 9.6e-07 57.4 35 71.4
CiPaw.13G091000 Carya illinoinensis HOM05D001415 ORTHO05D001075 1.3e-06 57.0 37 67.6
COL.COLO4_26977 Corchorus olitorius HOM05D001415 ORTHO05D001075 1.3e-06 57.0 46 50.0
Glyma.03G182700 Glycine max HOM05D001415 ORTHO05D001075 1.3e-06 57.0 41 48.8
Glyma.19G183200 Glycine max HOM05D001415 ORTHO05D001075 1.3e-06 57.0 41 48.8
Lj3g0014912 Lotus japonicus HOM05D001415 ORTHO05D001075 1.6e-06 56.6 120 40.8
Sed0008013 Sechium edule HOM05D001415 ORTHO05D001075 1.6e-06 56.6 117 44.4
Cc01_g13180 Coffea canephora HOM05D001415 ORTHO05D001075 2.1e-06 56.2 36 61.1
Glyma.12G061000 Glycine max HOM05D008503 ORTHO05D001075 2.1e-06 56.2 120 44.2
Phvul.001G178700 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 2.1e-06 56.2 41 48.8
SalBow3G1548 Salvia bowleyana HOM05D001415 ORTHO05D001075 2.1e-06 56.2 67 50.7
unitig_746.g26724 Utricularia gibba HOM05D001415 ORTHO05D001075 2.1e-06 56.2 123 39.8
Atru.chr3.3969 Acer truncatum HOM05D001415 ORTHO05D001075 2.8e-06 55.8 115 43.5
MELO3C020615.2 Cucumis melo HOM05D001415 ORTHO05D001075 2.8e-06 55.8 133 36.8
Duzib170G0931 Durio zibethinus HOM05D001415 ORTHO05D001075 2.8e-06 55.8 126 40.5
Medtr4g064520 Medicago truncatula HOM05D001415 ORTHO05D001075 2.8e-06 55.8 115 40.9
THA.LOC109116388 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 2.8e-06 55.8 36 61.1
Duzib128G1683 Durio zibethinus HOM05D001415 ORTHO05D001075 3.6e-06 55.5 45 46.7
Lsat_1_v5_gn_2_118460 Lactuca sativa HOM05D001415 ORTHO05D001075 3.6e-06 55.5 62 53.2
Lalb_Chr01g0018721 Lupinus albus HOM05D001415 ORTHO05D001075 3.6e-06 55.5 39 48.7
Lalb_Chr02g0152101 Lupinus albus HOM05D001415 ORTHO05D001075 3.6e-06 55.5 38 55.3
Manes.01G170700 Manihot esculenta HOM05D001415 ORTHO05D001075 3.6e-06 55.5 118 43.2
GSVIVG01025722001 Vitis vinifera HOM05D001415 ORTHO05D001075 3.6e-06 55.5 36 55.6
CiPaw.14G067100 Carya illinoinensis HOM05D001415 ORTHO05D001075 4.8e-06 55.1 35 65.7
CsaV3_1G034460 Cucumis sativus L. HOM05D001415 ORTHO05D001075 4.8e-06 55.1 47 61.7
Gohir.D09G143600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 4.8e-06 55.1 48 45.8
Potri.009G034300 Populus trichocarpa HOM05D001415 ORTHO05D001075 4.8e-06 55.1 116 39.7
Thecc.10G082100 Theobroma cacao HOM05D001415 ORTHO05D001075 4.8e-06 55.1 45 51.1
BcaB02g09311 Brassica carinata HOM05D001415 ORTHO05D001075 6.2e-06 54.7 36 55.6
A05p08830 Brassica napus HOM05D001415 ORTHO05D001075 6.2e-06 54.7 36 55.6
BraA05t19850Z Brassica rapa HOM05D001415 ORTHO05D001075 6.2e-06 54.7 36 55.6
Gohir.A13G227216 Gossypium hirsutum HOM05D001415 ORTHO05D001075 6.2e-06 54.7 51 56.9
Gohir.D13G232500 Gossypium hirsutum HOM05D001415 ORTHO05D001075 6.2e-06 54.7 51 56.9
Gorai.013G263300 Gossypium raimondii HOM05D001415 ORTHO05D001075 6.2e-06 54.7 51 56.9
Lj3g0013501 Lotus japonicus HOM05D008503 ORTHO05D001075 6.2e-06 54.7 88 44.3
Manes.02G130200 Manihot esculenta HOM05D001415 ORTHO05D001075 6.2e-06 54.7 118 41.5
Phvul.007G098500 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 6.2e-06 54.7 43 55.8
Cc02_g07600 Coffea canephora HOM05D001415 ORTHO05D001075 8.1e-06 54.3 65 50.8
Gohir.A09G147800 Gossypium hirsutum HOM05D001415 ORTHO05D001075 8.1e-06 54.3 48 45.8
Gorai.009G311300 Gossypium raimondii HOM05D001415 ORTHO05D001075 8.1e-06 54.3 57 43.9
HanXRQChr11g0327601 Helianthus annuus HOM05D001415 ORTHO05D001075 8.1e-06 54.3 117 38.5
MD12G1114900 Malus domestica HOM05D001415 ORTHO05D001075 8.1e-06 54.3 44 50.0


User provided reference genes

Program Settings