Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 3.9e-235 818.5 717 100.0
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 7.3e-165 585.1 717 82.6
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 2.9e-145 520.0 628 86.9
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 2.7e-143 513.5 640 84.5
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 1.0e-126 458.4 694 77.8
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 2.3e-126 457.2 717 75.9
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 5.3e-123 446.0 681 78.6
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 1.5e-122 444.5 690 77.4
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 2.9e-121 440.3 688 77.8
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 9.3e-120 435.3 728 73.9
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 1.2e-119 434.9 688 77.8
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 3.0e-118 430.3 627 80.2
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 1.1e-117 428.3 675 78.1
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 1.9e-117 427.6 717 73.8
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 2.5e-117 427.2 702 74.4
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 3.7e-116 423.3 691 67.4
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 1.4e-115 421.4 705 73.0
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 2.4e-115 420.6 700 72.9
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 7.7e-114 415.6 695 73.4
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 1.3e-113 414.8 699 72.7
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 1.7e-113 414.5 730 70.3
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 2.9e-113 413.7 729 67.6
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 3.8e-113 413.3 700 72.3
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 1.1e-112 411.8 627 78.5
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 7.2e-112 409.1 716 72.5
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 6.1e-111 406.0 670 74.9
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 7.9e-111 405.6 721 72.4
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 4.3e-109 399.8 727 69.7
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 1.7e-108 397.9 700 72.6
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 3.7e-108 396.7 726 69.4
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 3.7e-108 396.7 719 70.4
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 6.3e-108 396.0 716 71.5
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 1.1e-107 395.2 622 74.0
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 2.4e-107 394.0 706 71.2
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 2.4e-107 394.0 691 71.5
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 6.9e-107 392.5 670 74.0
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 2.9e-105 387.1 547 84.6
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 5.0e-105 386.3 679 73.6
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 6.5e-105 386.0 712 71.6
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 8.5e-105 385.6 705 70.8
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 2.1e-103 380.9 710 71.4
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 6.1e-103 379.4 695 70.4
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 2.3e-102 377.5 654 72.8
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 2.3e-102 377.5 721 70.3
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 5.1e-102 376.3 710 67.0
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 5.7e-101 372.9 727 71.9
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 1.7e-100 371.3 708 68.9
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 2.2e-100 370.9 693 71.6
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 8.2e-100 369.0 721 69.8
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 1.1e-99 368.6 705 67.9
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 1.1e-99 368.6 715 68.0
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 1.1e-99 368.6 711 70.0
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 5.3e-99 366.3 614 77.2
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 2.0e-98 364.4 687 69.1
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 3.5e-98 363.6 684 69.0
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 5.9e-98 362.8 727 64.6
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 7.7e-98 362.5 624 75.3
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 1.3e-97 361.7 726 67.2
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 2.9e-97 360.5 621 73.8
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 1.1e-96 358.6 709 69.8
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 1.9e-96 357.8 631 73.2
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 2.5e-96 357.5 734 66.1
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 4.2e-96 356.7 589 76.7
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 7.2e-96 355.9 669 66.4
CSS0030055 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 1.8e-94 351.3 482 68.0
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 2.3e-94 350.9 555 80.4
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 6.7e-94 349.4 623 73.8
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 8.8e-94 349.0 643 73.7
Dinv38489 Davidia involucrata HOM05D007098 ORTHO05D008793 2.0e-93 347.8 416 73.3
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 2.6e-93 347.4 596 75.3
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 2.6e-93 347.4 661 71.7
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 4.4e-93 346.7 673 63.6
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 2.8e-92 344.0 677 72.4
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 3.7e-92 343.6 672 66.5
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 4.8e-92 343.2 672 66.4
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 1.1e-91 342.0 619 68.0
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 4.1e-91 340.1 618 68.0
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 7.7e-90 335.9 615 74.0
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 1.3e-89 335.1 618 67.8
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 2.9e-89 334.0 702 68.5
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 6.5e-89 332.8 619 67.2
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 8.5e-89 332.4 675 70.2
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 1.2e-87 328.6 627 72.7
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 1.2e-87 328.6 719 68.4
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 2.7e-87 327.4 674 69.1
arahy.Tifrunner.gnm1.ann1.L7HRZC Arachis hypogaea HOM05D007098 ORTHO05D008793 8.0e-87 325.9 376 50.0
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 1.3e-84 318.5 723 62.9
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 1.2e-82 312.0 675 55.0
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 1.3e-81 308.5 677 67.7
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 6.5e-81 306.2 505 84.2
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 2.5e-80 304.3 409 59.2
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 6.1e-79 299.7 629 69.3
VMungo1215G0824 Vigna mungo HOM05D007098 ORTHO05D008793 1.2e-74 285.4 343 48.4
Lj5A101T108 Lonicera japonica HOM05D007098 ORTHO05D008793 5.9e-74 283.1 224 60.7
Phvul.003G042600 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 3.3e-72 277.3 714 65.0
Ca_04973_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 2.8e-71 274.2 397 68.0
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 6.0e-58 229.9 491 81.3
SEGI_05165 Sequoiadendron giganteum HOM05D007098 ORTHO05D008793 8.1e-55 219.5 345 62.6
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 4.4e-53 213.8 509 77.2
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 5.8e-53 213.4 504 76.8
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 3.0e-49 201.1 549 67.8
Ca_26530_v3 Cicer arietinum L. HOM05D005706 ORTHO05D008793 1.4e-35 155.6 239 84.1
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 3.5e-34 151.0 118 61.0
DCAR_021600 Daucus carota HOM05D007098 ORTHO05D008793 8.4e-28 129.8 83 80.7
Lj5C101T15 Lonicera japonica HOM05D007098 ORTHO05D008793 2.4e-27 128.3 83 80.7
Ca_30971_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 1.0e-25 122.9 178 42.1
Mapoly0023s0082 Marchantia polymorpha HOM05D007098 ORTHO05D008793 2.3e-25 121.7 200 32.5
Duzib084G0201 Durio zibethinus HOM05D007098 ORTHO05D008793 2.8e-23 114.8 74 78.4
Pp3c3_19290 Physcomitrium patens HOM05D007098 ORTHO05D008793 3.6e-23 114.4 193 30.6
MBI11_g46065_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 2.0e-21 108.6 78 73.1
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 2.2e-20 105.1 67 83.6
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 3.0e-17 94.7 79 64.6
AagrBONN_evm.TU.Sc2ySwM_228.5130 Anthoceros agrestis HOM05D007098 ORTHO05D008793 1.5e-16 92.4 197 27.9
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 5.5e-11 73.9 56 67.9
ClCG03G003360 Citrullus lanatus HOM05D007098 ORTHO05D008793 1.6e-10 72.4 65 61.5
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 3.0e-09 68.2 127 39.4
Atru.BG.37.p Acer truncatum HOM05D000001 ORTHO05D009069 2.4e-06 58.5 186 24.2


User provided reference genes

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