Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.08g215420 Amaranthus hybridus HOM05D000782 ORTHO05D000571 1.3e-114 416.4 202 100.0
EL10Ac7g15871 Beta vulgaris HOM05D000782 ORTHO05D000571 3.8e-79 298.5 198 73.2
AUR62009715 Chenopodium quinoa HOM05D000782 ORTHO05D000571 1.8e-76 289.7 199 71.4
AUR62036230 Chenopodium quinoa HOM05D006271 ORTHO05D008237 4.4e-75 285.0 182 73.6
GSVIVG01024611001 Vitis vinifera HOM05D000001 ORTHO05D012572 2.2e-42 176.4 174 52.3
Actinidia32599 Actinidia chinensis HOM05D000782 ORTHO05D000571 7.1e-41 171.4 177 50.3
TAR369G0987 Trochodendron aralioides HOM05D000782 ORTHO05D000571 2.7e-40 169.5 179 51.4
Hma1.2p1_1421F.1_g282460 Hydrangea macrophylla HOM05D000782 ORTHO05D000571 1.9e-38 163.3 175 45.1
Lj2A1095G46 Lonicera japonica HOM05D000782 ORTHO05D000571 5.6e-38 161.8 179 47.5
Rhsim13G0062600 Rhododendron simsii HOM05D000782 ORTHO05D000571 1.6e-37 160.2 180 47.2
vmacro02905 Vaccinium macrocarpon HOM05D000782 ORTHO05D000571 1.6e-37 160.2 178 48.3
Duzib168G2101 Durio zibethinus HOM05D000782 ORTHO05D000571 5.3e-36 155.2 184 46.7
Lsat_1_v5_gn_8_108720 Lactuca sativa HOM05D000782 ORTHO05D000571 1.5e-35 153.7 184 44.6
Sabra19G0130500 Salix brachista HOM05D000782 ORTHO05D000571 2.0e-35 153.3 174 46.6
QL01p025713 Quercus lobata HOM05D000782 ORTHO05D000571 5.8e-35 151.8 171 44.4
HanXRQChr11g0339921 Helianthus annuus HOM05D000782 ORTHO05D000571 9.9e-35 151.0 187 42.2
PGSC0003DMG400030460 Solanum tuberosum HOM05D000782 ORTHO05D000571 2.2e-34 149.8 184 42.9
CAN.G1095.28 Capsicum annuum HOM05D000782 ORTHO05D000571 2.9e-34 149.4 180 43.3
Sopen06g033770 Solanum pennellii HOM05D000782 ORTHO05D000571 2.9e-34 149.4 183 42.6
QL04p095983 Quercus lobata HOM05D000782 ORTHO05D000571 3.8e-34 149.1 171 43.3
Atru.chr1.2094 Acer truncatum HOM05D000782 ORTHO05D000571 4.9e-34 148.7 175 44.0
QL04p095962 Quercus lobata HOM05D000782 ORTHO05D000571 4.9e-34 148.7 171 43.3
Thecc.09G359700 Theobroma cacao HOM05D000782 ORTHO05D000571 6.4e-34 148.3 198 41.4
ECA236G0449 Erigeron canadensis HOM05D000782 ORTHO05D000571 1.1e-33 147.5 185 43.8
Solyc06g082380.3 Solanum lycopersicum HOM05D000782 ORTHO05D000571 1.4e-33 147.1 183 42.6
Prupe.6G045600 Prunus persica HOM05D000782 ORTHO05D000571 2.4e-33 146.4 190 44.2
Cpa.g.sc2.336 Carica papaya HOM05D000782 ORTHO05D000571 3.2e-33 146.0 174 43.7
Migut.N00751 Erythranthe guttata HOM05D000782 ORTHO05D000571 3.2e-33 146.0 175 42.3
COL.COLO4_11173 Corchorus olitorius HOM05D000782 ORTHO05D000571 4.2e-33 145.6 183 45.9
Gohir.D03G143800 Gossypium hirsutum HOM05D000782 ORTHO05D000571 4.2e-33 145.6 187 44.9
Oeu050028.1 Olea europaea HOM05D000782 ORTHO05D000571 4.2e-33 145.6 182 41.8
Gorai.003G151100 Gossypium raimondii HOM05D000782 ORTHO05D000571 7.1e-33 144.8 187 44.9
Sc21g0004900 Simmondsia chinensis HOM05D000782 ORTHO05D000571 7.1e-33 144.8 156 49.4
Cc01_g15010 Coffea canephora HOM05D000782 ORTHO05D000571 9.3e-33 144.4 192 39.6
MD11G1060400 Malus domestica HOM05D000782 ORTHO05D000571 1.2e-32 144.1 175 45.7
FAN21G0593 Fragaria x ananassa HOM05D000782 ORTHO05D000571 3.5e-32 142.5 176 42.6
Sabra19G0124100 Salix brachista HOM05D000782 ORTHO05D000571 4.6e-32 142.1 199 40.7
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 7.8e-32 141.4 169 47.9
FvH4_3g39960 Fragaria vesca HOM05D000782 ORTHO05D000571 7.8e-32 141.4 176 42.6
FAN16G3647 Fragaria x ananassa HOM05D000001 ORTHO05D012572 7.8e-32 141.4 176 42.6
MD03G1058200 Malus domestica HOM05D000782 ORTHO05D000571 1.0e-31 141.0 175 44.6
TWI79G1409 Tripterygium wilfordii HOM05D000782 ORTHO05D000571 1.0e-31 141.0 190 42.6
FAN25G1963 Fragaria x ananassa HOM05D000001 ORTHO05D012572 1.7e-31 140.2 176 42.0
Manes.18G126600 Manihot esculenta HOM05D000782 ORTHO05D000571 2.3e-31 139.8 176 44.3
Phvul.008G250800 Phaseolus vulgaris HOM05D000782 ORTHO05D000571 2.3e-31 139.8 183 43.7
BcaC01g06019 Brassica carinata HOM05D000782 ORTHO05D000571 3.9e-31 139.0 177 42.4
RcHm_v2.0_Chr5g0071971 Rosa chinensis HOM05D000782 ORTHO05D000571 5.1e-31 138.7 175 42.9
Gohir.D08G221000 Gossypium hirsutum HOM05D000782 ORTHO05D000571 2.5e-30 136.3 186 41.4
Gorai.004G234700 Gossypium raimondii HOM05D000782 ORTHO05D000571 2.5e-30 136.3 186 41.4
SalBow2G3499 Salvia bowleyana HOM05D000782 ORTHO05D000571 2.5e-30 136.3 182 42.3
Haze_24431 Corylus avellana HOM05D000782 ORTHO05D000571 3.3e-30 136.0 172 44.2
A03p16910 Brassica napus HOM05D000782 ORTHO05D000571 4.3e-30 135.6 173 42.8
BraA03t10980Z Brassica rapa HOM05D000782 ORTHO05D000571 4.3e-30 135.6 173 42.8
C03p19910 Brassica napus HOM05D000782 ORTHO05D000571 5.6e-30 135.2 177 41.8
BolC3t14370H Brassica oleracea HOM05D000782 ORTHO05D000571 5.6e-30 135.2 177 41.8
Ciclev10002580m.g Citrus clementina HOM05D000782 ORTHO05D000571 5.6e-30 135.2 180 39.4
DCAR_023953 Daucus carota HOM05D000782 ORTHO05D000571 5.6e-30 135.2 187 43.9
TPR.G25342 Trifolium pratense HOM05D000782 ORTHO05D000571 5.6e-30 135.2 182 42.3
Lalb_Chr10g0103661 Lupinus albus HOM05D000782 ORTHO05D000571 7.3e-30 134.8 174 43.7
Glyma.14G200600 Glycine max HOM05D000782 ORTHO05D000571 9.6e-30 134.4 183 42.1
MBI15_g20019_MAGBIO Magnolia biondii HOM05D000782 ORTHO05D000571 9.6e-30 134.4 179 40.8
Sp4g12850 Schrenkiella parvula HOM05D000782 ORTHO05D000571 1.3e-29 134.0 178 42.7
Psat0s2794g0120 Pisum sativum HOM05D000782 ORTHO05D000571 1.6e-29 133.7 176 43.8
unitig_22.g5204 Utricularia gibba HOM05D006159 ORTHO05D007624 1.6e-29 133.7 164 41.5
Aa31LG5G6450 Aethionema arabicum HOM05D002411 ORTHO05D002564 2.1e-29 133.3 177 42.4
Nn2g11061 Nelumbo nucifera HOM05D000782 ORTHO05D000571 3.6e-29 132.5 180 43.9
Thhalv10017277m.g Eutrema salsugineum HOM05D000782 ORTHO05D000571 8.1e-29 131.3 179 43.0
Medtr5g074550 Medicago truncatula HOM05D000782 ORTHO05D000571 8.1e-29 131.3 183 41.0
VMungo0647G1733 Vigna mungo HOM05D000782 ORTHO05D000571 8.1e-29 131.3 183 41.5
MSTRG.12694 Avicennia marina HOM05D000782 ORTHO05D000571 1.8e-28 130.2 182 41.8
AL4G25120 Arabidopsis lyrata HOM05D000782 ORTHO05D000571 3.1e-28 129.4 176 41.5
CiPaw.14G053200 Carya illinoinensis HOM05D000782 ORTHO05D000571 6.9e-28 128.3 174 39.7
Actinidia23186 Actinidia chinensis HOM05D006271 ORTHO05D008237 9.0e-28 127.9 154 44.8
MELO3C024977.2 Cucumis melo HOM05D000782 ORTHO05D000571 1.2e-27 127.5 172 44.2
THA.LOC104800764 Tarenaya hassleriana HOM05D000782 ORTHO05D000571 1.2e-27 127.5 174 42.0
Carub.0004s1143 Capsella rubella HOM05D000782 ORTHO05D000571 1.5e-27 127.1 176 40.9
Medtr5g074560 Medicago truncatula HOM05D000782 ORTHO05D000571 1.5e-27 127.1 175 40.0
CsaV3_7G022830 Cucumis sativus L. HOM05D000782 ORTHO05D000571 2.6e-27 126.3 172 43.0
ClCG08G003160 Citrullus lanatus HOM05D000782 ORTHO05D000571 4.5e-27 125.6 171 40.9
PSO170G6702 Papaver somniferum HOM05D000782 ORTHO05D000571 5.8e-27 125.2 176 41.5
Sed0021709 Sechium edule HOM05D000782 ORTHO05D000571 5.8e-27 125.2 174 41.4
CARHR123590 Cardamine hirsuta HOM05D000782 ORTHO05D000571 1.3e-26 124.0 173 41.0
AT2G30270 Arabidopsis thaliana HOM05D000782 ORTHO05D000571 2.9e-26 122.9 176 39.2
Eucgr.K01367 Eucalyptus grandis HOM05D000782 ORTHO05D000571 1.9e-25 120.2 185 38.9
Dinv12248 Davidia involucrata HOM05D000782 ORTHO05D000571 9.3e-25 117.9 138 44.2
CiPaw.13G067500 Carya illinoinensis HOM05D000782 ORTHO05D000571 1.2e-24 117.5 183 39.3
LjContig00141g0026997 Lotus japonicus HOM05D000782 ORTHO05D000571 1.6e-24 117.1 197 37.1
ClCG03G000180 Citrullus lanatus HOM05D000782 ORTHO05D000571 4.6e-24 115.5 205 35.1
Potri.019G126300 Populus trichocarpa HOM05D000782 ORTHO05D000571 4.6e-24 115.5 173 38.7
TAR623G1242 Trochodendron aralioides HOM05D000782 ORTHO05D000571 1.8e-23 113.6 136 43.4
TAR623G0287 Trochodendron aralioides HOM05D000782 ORTHO05D000571 3.9e-23 112.5 148 40.5
arahy.Tifrunner.gnm1.ann1.NRMQ9K Arachis hypogaea HOM05D000782 ORTHO05D000571 8.7e-23 111.3 178 36.5
Gohir.A03G024700 Gossypium hirsutum HOM05D000782 ORTHO05D000571 2.8e-21 106.3 136 43.4
PSO017G2384 Papaver somniferum HOM05D000782 ORTHO05D000571 6.9e-20 101.7 173 37.0
Gohir.A08G203700 Gossypium hirsutum HOM05D000782 ORTHO05D000571 1.5e-19 100.5 133 40.6
CSS0016607 Camellia sinensis var. sinensis HOM05D000782 ORTHO05D000571 1.7e-18 97.1 92 50.0
MD17G1185800 Malus domestica HOM05D000782 ORTHO05D000571 4.9e-18 95.5 134 41.0
Aqoxy4G02166 Aquilegia oxysepala HOM05D000782 ORTHO05D000571 1.0e-15 87.8 200 32.0
DCAR_028900 Daucus carota HOM05D000782 ORTHO05D000571 1.1e-14 84.3 181 30.9
Zm00001eb286650 Zea mays HOM05D000782 ORTHO05D000571 3.3e-14 82.8 168 29.8
Oeu050030.1 Olea europaea HOM05D000782 ORTHO05D000571 2.8e-13 79.7 66 53.0
Glyma.02G233000 Glycine max HOM05D000782 ORTHO05D000571 3.7e-13 79.3 141 34.0
CDE06G2424 Ceratophyllum demersum HOM05D000782 ORTHO05D000571 2.4e-12 76.6 175 30.9
SEGI_38654 Sequoiadendron giganteum HOM05D000782 ORTHO05D000571 3.1e-12 76.3 160 32.5
DCAR_028903 Daucus carota HOM05D000782 ORTHO05D000571 4.1e-12 75.9 188 30.3
Thecc.04G157300 Theobroma cacao HOM05D000782 ORTHO05D000571 5.3e-12 75.5 171 28.7
Ca_05681_v3 Cicer arietinum L. HOM05D000782 ORTHO05D000571 6.9e-12 75.1 142 33.8
SEGI_32147 Sequoiadendron giganteum HOM05D000782 ORTHO05D000571 1.2e-11 74.3 177 29.9
DCAR_028905 Daucus carota HOM05D000782 ORTHO05D000571 1.5e-11 73.9 192 27.6
CDE06G0912 Ceratophyllum demersum HOM05D000782 ORTHO05D000571 7.6e-11 71.6 199 29.6
Os05g0339200 Oryza sativa ssp. japonica HOM05D000782 ORTHO05D000571 1.0e-10 71.2 178 28.7
DCAR_015455 Daucus carota HOM05D000782 ORTHO05D000571 1.3e-10 70.9 176 27.8
CANSAT35G0618 Cannabis sativa HOM05D000782 ORTHO05D000571 1.7e-10 70.5 181 28.7
ECA247G3886 Erigeron canadensis HOM05D000782 ORTHO05D000571 1.7e-10 70.5 175 28.6
Eucgr.K01265 Eucalyptus grandis HOM05D000782 ORTHO05D000571 1.7e-10 70.5 156 29.5
SHI19227 Sapria himalayana HOM05D000782 ORTHO05D000571 1.7e-10 70.5 89 39.3
Cc06_g00620 Coffea canephora HOM05D000782 ORTHO05D000571 2.2e-10 70.1 179 25.7
Dinv25291 Davidia involucrata HOM05D000782 ORTHO05D000571 2.9e-10 69.7 185 27.0
Nitab4.5_0002768g0070 Nicotiana tabacum HOM05D000782 ORTHO05D000571 2.9e-10 69.7 177 28.8
Nitab4.5_0003270g0030 Nicotiana tabacum HOM05D000782 ORTHO05D000571 3.8e-10 69.3 124 35.5
TAR623G1291 Trochodendron aralioides HOM05D000782 ORTHO05D000571 6.5e-10 68.6 179 25.1
ATR0681G158 Amborella trichopoda HOM05D000782 ORTHO05D000571 1.1e-09 67.8 200 28.0
TAR623G1064 Trochodendron aralioides HOM05D000782 ORTHO05D000571 1.1e-09 67.8 179 25.1
Migut.J00079 Erythranthe guttata HOM05D000782 ORTHO05D000571 1.4e-09 67.4 177 29.4
HPP92_001136 Vanilla planifolia HOM05D000782 ORTHO05D000571 1.4e-09 67.4 139 34.5
AL6G10280 Arabidopsis lyrata HOM05D000782 ORTHO05D000571 2.5e-09 66.6 174 29.3
SGA_v2.0_scaffold120G32965 Striga asiatica HOM05D000782 ORTHO05D000571 2.5e-09 66.6 188 27.1
MSTRG.5527 Avicennia marina HOM05D000782 ORTHO05D000571 3.2e-09 66.2 195 25.1
SalBow5G2396 Salvia bowleyana HOM05D000782 ORTHO05D000571 3.2e-09 66.2 199 25.1
Lj3g0018258 Lotus japonicus HOM05D000782 ORTHO05D000571 7.1e-09 65.1 196 24.0
Thhalv10014621m.g Eutrema salsugineum HOM05D000782 ORTHO05D000571 1.6e-08 63.9 174 27.6
Lj2A64T52 Lonicera japonica HOM05D000782 ORTHO05D000571 3.5e-08 62.8 154 27.3
GSVIVG01030237001 Vitis vinifera HOM05D000782 ORTHO05D000571 3.5e-08 62.8 141 28.4
Carub.0006s0008 Capsella rubella HOM05D000782 ORTHO05D000571 4.6e-08 62.4 174 28.2
Aa31LG1G23400 Aethionema arabicum HOM05D000782 ORTHO05D000571 6.1e-08 62.0 155 29.0
C03p45130 Brassica napus HOM05D000782 ORTHO05D000571 1.3e-07 60.8 172 26.2
TWI77G0877 Tripterygium wilfordii HOM05D000782 ORTHO05D000571 1.8e-07 60.5 183 27.9
BraA01t04163Z Brassica rapa HOM05D000782 ORTHO05D000571 2.3e-07 60.1 152 28.9
Thhalv10022341m.g Eutrema salsugineum HOM05D000782 ORTHO05D000571 2.3e-07 60.1 152 27.6
THA.LOC104823312 Tarenaya hassleriana HOM05D000782 ORTHO05D000571 2.3e-07 60.1 153 27.5
BolC3t16777H Brassica oleracea HOM05D000782 ORTHO05D000571 3.0e-07 59.7 172 26.2
BcaB04g21120 Brassica carinata HOM05D000782 ORTHO05D000571 5.1e-07 58.9 172 26.7
A03p37270 Brassica napus HOM05D000782 ORTHO05D000571 5.1e-07 58.9 172 26.2
BraA03t12887Z Brassica rapa HOM05D000782 ORTHO05D000571 5.1e-07 58.9 172 26.2
TAR623G0969 Trochodendron aralioides HOM05D000782 ORTHO05D000571 5.1e-07 58.9 69 39.1
Carub.0003s1108 Capsella rubella HOM05D000782 ORTHO05D000571 6.7e-07 58.5 152 27.6
BcaC09g48200 Brassica carinata HOM05D000782 ORTHO05D000571 1.1e-06 57.8 152 28.3
ClCG10G022570 Citrullus lanatus HOM05D000782 ORTHO05D000571 1.1e-06 57.8 194 24.7
Peaxi162Scf00390g00530 Petunia axillaris HOM05D000782 ORTHO05D000571 1.1e-06 57.8 107 32.7
Thecc.04G157000 Theobroma cacao HOM05D000782 ORTHO05D000571 1.9e-06 57.0 181 26.0
BolC1t05294H Brassica oleracea HOM05D000782 ORTHO05D000571 2.5e-06 56.6 152 28.3
vmacro08921 Vaccinium macrocarpon HOM05D000782 ORTHO05D000571 2.5e-06 56.6 195 28.2
Aqoxy1G00420 Aquilegia oxysepala HOM05D000782 ORTHO05D000571 7.4e-06 55.1 159 27.7


User provided reference genes

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