Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.08g214930 Amaranthus hybridus HOM05D004186 ORTHO05D061406 1.9e-77 292.4 142 100.0
Pp3c6_6020 Physcomitrium patens HOM05D004186 ORTHO05D006965 4.5e-26 121.7 141 46.1
SEGI_15575 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 4.5e-26 121.7 141 47.5
SEGI_36533 Sequoiadendron giganteum HOM05D004186 ORTHO05D006965 4.5e-26 121.7 141 47.5
AagrBONN_evm.TU.Sc2ySwM_228.4505 Anthoceros agrestis HOM05D004186 ORTHO05D006965 1.3e-25 120.2 141 45.4
BcaB08g36123 Brassica carinata HOM05D004186 ORTHO05D006965 2.9e-25 119.0 135 45.2
Cpa.g.sc95.75 Carica papaya HOM05D004186 ORTHO05D006965 5.0e-25 118.2 135 45.9
MCO08G279 Micromonas commoda HOM05D004186 ORTHO05D006965 6.5e-25 117.9 137 46.0
Sp6g19340 Schrenkiella parvula HOM05D004186 ORTHO05D006965 6.5e-25 117.9 135 43.7
BraA10t43588Z Brassica rapa HOM05D004186 ORTHO05D006965 1.1e-24 117.1 135 44.4
C09p49530 Brassica napus HOM05D004186 ORTHO05D006965 2.5e-24 115.9 135 43.7
A10p15060 Brassica napus HOM05D004186 ORTHO05D006965 3.2e-24 115.5 135 43.7
Mapoly0030s0071 Marchantia polymorpha HOM05D004186 ORTHO05D006965 3.2e-24 115.5 141 45.4
SMO259G0020 Selaginella moellendorffii HOM05D004186 ORTHO05D006965 3.2e-24 115.5 135 45.9
AT5G57655 Arabidopsis thaliana HOM05D004186 ORTHO05D006965 4.2e-24 115.2 135 43.7
BcaC04g19942 Brassica carinata HOM05D004186 ORTHO05D006965 4.2e-24 115.2 135 43.7
BolC9t57806H Brassica oleracea HOM05D004186 ORTHO05D006965 4.2e-24 115.2 135 43.7
Carub.0008s1816 Capsella rubella HOM05D004186 ORTHO05D006965 4.2e-24 115.2 135 43.7
AL8G33680 Arabidopsis lyrata HOM05D004186 ORTHO05D006965 9.4e-24 114.0 135 43.7
CARHR271410 Cardamine hirsuta HOM05D004186 ORTHO05D006965 9.4e-24 114.0 141 41.1
Thhalv10013406m.g Eutrema salsugineum HOM05D004186 ORTHO05D006965 9.4e-24 114.0 135 43.0
HanXRQChr05g0136751 Helianthus annuus HOM05D004186 ORTHO05D006965 9.4e-24 114.0 133 45.9
Manes.06G027600 Manihot esculenta HOM05D004186 ORTHO05D006965 9.4e-24 114.0 135 44.4
THA.LOC104813530 Tarenaya hassleriana HOM05D004186 ORTHO05D006965 9.4e-24 114.0 135 42.2
EL10Ac8g18262 Beta vulgaris HOM05D004186 ORTHO05D006965 1.6e-23 113.2 135 43.0
Cpa.g.sc75.2 Carica papaya HOM05D004186 ORTHO05D006965 1.6e-23 113.2 135 43.0
MSTRG.19694 Avicennia marina HOM05D004186 ORTHO05D006965 4.7e-23 111.7 135 43.7
Duzib034G0005 Durio zibethinus HOM05D004186 ORTHO05D006965 6.1e-23 111.3 135 43.0
Duzib114G0309 Durio zibethinus HOM05D004186 ORTHO05D006965 6.1e-23 111.3 135 43.0
TWI32G0580 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 6.1e-23 111.3 133 44.4
Glyma.17G066200 Glycine max HOM05D004186 ORTHO05D006965 8.0e-23 110.9 136 43.4
Gohir.A05G280700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 8.0e-23 110.9 135 43.0
Gohir.A06G175800 Gossypium hirsutum HOM05D004186 ORTHO05D006965 8.0e-23 110.9 137 43.1
Lsat_1_v5_gn_8_66460 Lactuca sativa HOM05D004186 ORTHO05D006965 8.0e-23 110.9 135 45.2
ATR0580G261 Amborella trichopoda HOM05D004186 ORTHO05D006965 1.0e-22 110.5 135 41.5
Hund26412 Selenicereus undatus HOM05D004186 ORTHO05D006965 1.0e-22 110.5 135 43.7
arahy.Tifrunner.gnm1.ann1.6S67WQ Arachis hypogaea HOM05D004186 ORTHO05D006965 1.4e-22 110.2 136 43.4
Lj4g0000380 Lotus japonicus HOM05D004186 ORTHO05D006965 1.4e-22 110.2 135 43.0
PGSC0003DMG400027477 Solanum tuberosum HOM05D004186 ORTHO05D006965 1.4e-22 110.2 135 45.2
Ciclev10008154m.g Citrus clementina HOM05D004186 ORTHO05D006965 1.8e-22 109.8 135 43.7
Gohir.D05G282700 Gossypium hirsutum HOM05D004186 ORTHO05D006965 1.8e-22 109.8 135 43.0
Gorai.009G296100 Gossypium raimondii HOM05D004186 ORTHO05D006965 1.8e-22 109.8 135 43.0
Oeu054233.2 Olea europaea HOM05D004186 ORTHO05D006965 1.8e-22 109.8 135 42.2
TWI34G1113 Tripterygium wilfordii HOM05D004186 ORTHO05D006965 1.8e-22 109.8 133 43.6
CiPaw.08G037900 Carya illinoinensis HOM05D004186 ORTHO05D006965 2.3e-22 109.4 135 43.0
Cc06_g13640 Coffea canephora HOM05D004186 ORTHO05D006965 2.3e-22 109.4 136 41.9
Duzib128G0608 Durio zibethinus HOM05D004186 ORTHO05D006965 2.3e-22 109.4 135 42.2
ECA236G4107 Erigeron canadensis HOM05D004186 ORTHO05D006965 2.3e-22 109.4 135 44.4
Eucgr.G01193 Eucalyptus grandis HOM05D004186 ORTHO05D006965 2.3e-22 109.4 135 42.2
Medtr4g128840 Medicago truncatula HOM05D004186 ORTHO05D006965 2.3e-22 109.4 135 43.0
TPR.G5301 Trifolium pratense HOM05D004186 ORTHO05D006965 2.3e-22 109.4 135 43.7
CiPaw.07G189100 Carya illinoinensis HOM05D004186 ORTHO05D006965 3.0e-22 109.0 135 43.0
Actinidia04122 Actinidia chinensis HOM05D004186 ORTHO05D006965 4.0e-22 108.6 135 43.0
CsaV3_2G008080 Cucumis sativus L. HOM05D004186 ORTHO05D006965 4.0e-22 108.6 135 42.2
MBI14_g39543_MAGBIO Magnolia biondii HOM05D004186 ORTHO05D006965 4.0e-22 108.6 135 43.0
Nitab4.5_0000244g0180 Nicotiana tabacum HOM05D004186 ORTHO05D006965 4.0e-22 108.6 135 43.7
ClCG11G012460 Citrullus lanatus HOM05D004186 ORTHO05D006965 5.2e-22 108.2 135 42.2
Hma1.2p1_1261F.1_g271200 Hydrangea macrophylla HOM05D004186 ORTHO05D006965 5.2e-22 108.2 135 41.5
Nitab4.5_0001212g0070 Nicotiana tabacum HOM05D004186 ORTHO05D006965 5.2e-22 108.2 135 43.7
Sc08g0005470 Simmondsia chinensis HOM05D004186 ORTHO05D006965 5.2e-22 108.2 135 41.5
VMungo1215G1034 Vigna mungo HOM05D004186 ORTHO05D006965 5.2e-22 108.2 135 42.2
Lj9A689G39 Lonicera japonica HOM05D004186 ORTHO05D006965 6.8e-22 107.8 135 42.2
QL02p096850 Quercus lobata HOM05D004186 ORTHO05D006965 8.8e-22 107.5 135 43.0
Sed0027081 Sechium edule HOM05D004186 ORTHO05D006965 8.8e-22 107.5 133 42.1
Thecc.10G167400 Theobroma cacao HOM05D004186 ORTHO05D006965 8.8e-22 107.5 135 40.7
Zm00001eb111020 Zea mays HOM05D004186 ORTHO05D006965 8.8e-22 107.5 133 44.4
arahy.Tifrunner.gnm1.ann1.YY53PU Arachis hypogaea HOM05D004186 ORTHO05D006965 1.2e-21 107.1 136 41.9
CSS0041373 Camellia sinensis var. sinensis HOM05D004186 ORTHO05D006965 1.2e-21 107.1 135 41.5
CAN.G584.24 Capsicum annuum HOM05D004186 ORTHO05D006965 1.2e-21 107.1 135 43.0
MELO3C004075.2 Cucumis melo HOM05D004186 ORTHO05D006965 1.2e-21 107.1 135 42.2
Dinv42759 Davidia involucrata HOM05D004186 ORTHO05D006965 1.2e-21 107.1 135 42.2
Dinv43343 Davidia involucrata HOM05D004186 ORTHO05D006965 1.2e-21 107.1 135 42.2
Migut.J01448 Erythranthe guttata HOM05D004186 ORTHO05D006965 1.2e-21 107.1 135 43.0
Migut.K00260 Erythranthe guttata HOM05D004186 ORTHO05D006965 1.2e-21 107.1 135 43.0
PSO063G2639 Papaver somniferum HOM05D004186 ORTHO05D006965 1.2e-21 107.1 133 42.9
PSO782G1691 Papaver somniferum HOM05D004186 ORTHO05D006965 1.2e-21 107.1 133 42.9
Phvul.003G148700 Phaseolus vulgaris HOM05D004186 ORTHO05D006965 1.2e-21 107.1 135 43.0
Sopen07g002760 Solanum pennellii HOM05D004186 ORTHO05D006965 1.2e-21 107.1 135 43.7
SGA_v2.0_scaffold69G23283 Striga asiatica HOM05D004186 ORTHO05D006965 1.2e-21 107.1 135 42.2
unitig_26.g9078 Utricularia gibba HOM05D004186 ORTHO05D006965 1.2e-21 107.1 135 43.0
vmacro13097 Vaccinium macrocarpon HOM05D004186 ORTHO05D006965 1.2e-21 107.1 135 41.5
Atru.chr7.741 Acer truncatum HOM05D004186 ORTHO05D006965 1.5e-21 106.7 135 41.5
Nn2g12639 Nelumbo nucifera HOM05D004186 ORTHO05D006965 1.5e-21 106.7 135 42.2
Solyc07g006650.4 Solanum lycopersicum HOM05D004186 ORTHO05D006965 1.5e-21 106.7 135 43.7
HPP92_013702 Vanilla planifolia HOM05D004186 ORTHO05D006965 1.5e-21 106.7 133 42.9
Ca_21198_v3 Cicer arietinum L. HOM05D004186 ORTHO05D006965 2.0e-21 106.3 135 41.5
Manes.02G134800 Manihot esculenta HOM05D004186 ORTHO05D006965 2.0e-21 106.3 135 43.0
arahy.Tifrunner.gnm1.ann1.CAM23Q Arachis hypogaea HOM05D004186 ORTHO05D006965 2.6e-21 105.9 136 41.2
DCAR_017956 Daucus carota HOM05D004186 ORTHO05D006965 2.6e-21 105.9 135 42.2
MD13G1264900 Malus domestica HOM05D004186 ORTHO05D006965 2.6e-21 105.9 133 42.1
Ah.14g083970 Amaranthus hybridus HOM05D004186 ORTHO05D006965 3.4e-21 105.5 130 41.5
AUR62039990 Chenopodium quinoa HOM05D004186 ORTHO05D006965 3.4e-21 105.5 135 41.5
Haze_22131 Corylus avellana HOM05D004186 ORTHO05D006965 3.4e-21 105.5 135 41.5
TAR625G0733 Trochodendron aralioides HOM05D004186 ORTHO05D006965 4.4e-21 105.1 135 40.7
Aa31LG3G13490 Aethionema arabicum HOM05D004186 ORTHO05D006965 5.7e-21 104.8 143 40.6
Psat0ss9363g0320 Pisum sativum HOM05D004186 ORTHO05D006965 5.7e-21 104.8 135 41.5
Zm00001eb330180 Zea mays HOM05D004186 ORTHO05D006965 5.7e-21 104.8 133 42.9
Peaxi162Scf00942g00127 Petunia axillaris HOM05D004186 ORTHO05D006965 9.8e-21 104.0 136 42.6
Potri.018G096049 Populus trichocarpa HOM05D004186 ORTHO05D006965 9.8e-21 104.0 135 39.3
GSVIVG01029114001 Vitis vinifera HOM05D004186 ORTHO05D006965 9.8e-21 104.0 135 40.0
arahy.Tifrunner.gnm1.ann1.LBE3WY Arachis hypogaea HOM05D004186 ORTHO05D006965 1.3e-20 103.6 129 43.4
AUR62040296 Chenopodium quinoa HOM05D004186 ORTHO05D006965 1.3e-20 103.6 135 40.7
Oeu052240.1 Olea europaea HOM05D004186 ORTHO05D006965 1.3e-20 103.6 137 39.4
Os07g0669100 Oryza sativa ssp. japonica HOM05D004186 ORTHO05D006965 1.3e-20 103.6 133 42.1
Rhsim01G0008400 Rhododendron simsii HOM05D004186 ORTHO05D006965 1.3e-20 103.6 135 40.7
RhsimUnG0079700 Rhododendron simsii HOM05D004186 ORTHO05D006965 1.3e-20 103.6 135 40.7
CDE04G0897 Ceratophyllum demersum HOM05D004186 ORTHO05D006965 1.7e-20 103.2 135 41.5
MD16G1265900 Malus domestica HOM05D004186 ORTHO05D006965 1.7e-20 103.2 133 42.1
RcHm_v2.0_Chr4g0403601 Rosa chinensis HOM05D004186 ORTHO05D006965 1.7e-20 103.2 133 41.4
TAR636G1430 Trochodendron aralioides HOM05D004186 ORTHO05D006965 1.7e-20 103.2 135 40.0
Lalb_Chr11g0072331 Lupinus albus HOM05D004186 ORTHO05D006965 2.2e-20 102.8 141 39.7
CANSAT11G0657 Cannabis sativa HOM05D004186 ORTHO05D006965 2.8e-20 102.4 135 40.7
FvH4_4g32520 Fragaria vesca HOM05D004186 ORTHO05D006965 3.7e-20 102.1 135 40.0
Prupe.1G091900 Prunus persica HOM05D004186 ORTHO05D006965 3.7e-20 102.1 133 41.4
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 1.4e-19 100.1 129 41.1
FAN12G1387 Fragaria x ananassa HOM05D004186 ORTHO05D006965 7.0e-19 97.8 139 39.6
SalBow6G1169 Salvia bowleyana HOM05D004186 ORTHO05D006965 2.7e-18 95.9 140 40.0
SalBow6G3740 Salvia bowleyana HOM05D004186 ORTHO05D006965 2.7e-18 95.9 140 40.0
PRCOL_00002845 Prasinoderma coloniale HOM05D004186 ORTHO05D006965 2.3e-17 92.8 95 46.3
FAN07G2198 Fragaria x ananassa HOM05D004186 ORTHO05D006965 2.5e-16 89.4 133 39.1
FAN22G1241 Fragaria x ananassa HOM05D004186 ORTHO05D006965 2.5e-16 89.4 95 47.4
BcaC03g14138 Brassica carinata HOM05D004186 ORTHO05D032859 1.2e-15 87.0 78 52.6
C02p14070 Brassica napus HOM05D004186 ORTHO05D032859 1.2e-15 87.0 78 52.6
BolC2t07527H Brassica oleracea HOM05D004186 ORTHO05D032859 3.0e-14 82.4 72 52.8
arahy.Tifrunner.gnm1.ann1.WFV6V5 Arachis hypogaea HOM05D004186 ORTHO05D006965 4.4e-13 78.6 133 36.1
arahy.Tifrunner.gnm1.ann1.QC9P0E Arachis hypogaea HOM05D004186 ORTHO05D006965 5.7e-13 78.2 133 36.1
FAN17G2491 Fragaria x ananassa HOM05D004186 ORTHO05D006965 7.3e-08 61.2 100 37.0


User provided reference genes

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