Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.08g212400 Amaranthus hybridus HOM05D000161 ORTHO05D009031 0.0e+00 1734.2 840 100.0
EL10Ac7g17434 Beta vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1264.2 821 76.6
Sc24g0003880 Simmondsia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1183.7 813 72.0
AUR62034669 Chenopodium quinoa HOM05D000161 ORTHO05D009031 0.0e+00 1168.3 911 67.5
Dinv33015 Davidia involucrata HOM05D000161 ORTHO05D009031 0.0e+00 1139.4 811 69.1
COL.COLO4_08004 Corchorus olitorius HOM05D000161 ORTHO05D009031 0.0e+00 1132.9 792 69.4
Gohir.A11G116600 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1132.5 861 65.6
Gohir.D11G121700 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1130.5 813 67.9
Ciclev10018836m.g Citrus clementina HOM05D000161 ORTHO05D009031 0.0e+00 1129.8 811 69.3
MD03G1280600 Malus domestica HOM05D000161 ORTHO05D009031 0.0e+00 1126.7 809 68.0
Gorai.007G130400 Gossypium raimondii HOM05D000161 ORTHO05D009031 0.0e+00 1126.3 813 67.7
Thecc.01G293400 Theobroma cacao HOM05D000161 ORTHO05D009031 0.0e+00 1125.2 811 67.9
Actinidia00683 Actinidia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1124.8 801 68.9
TWI59G0096 Tripterygium wilfordii HOM05D000161 ORTHO05D009031 0.0e+00 1124.0 805 68.9
Prupe.8G255100 Prunus persica HOM05D000161 ORTHO05D009031 0.0e+00 1122.1 811 67.7
Atru.chr5.1245 Acer truncatum HOM05D000161 ORTHO05D009031 0.0e+00 1120.1 863 65.7
MSTRG.18182 Avicennia marina HOM05D000161 ORTHO05D009031 0.0e+00 1117.8 810 68.0
CiPaw.07G102700 Carya illinoinensis HOM05D000161 ORTHO05D009031 0.0e+00 1115.5 847 64.9
Oeu057577.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1113.6 800 68.6
GSVIVG01010978001 Vitis vinifera HOM05D000161 ORTHO05D009031 0.0e+00 1112.4 789 68.4
Duzib138G1706 Durio zibethinus HOM05D000161 ORTHO05D009031 0.0e+00 1112.1 821 67.0
Cc01_g20450 Coffea canephora HOM05D000161 ORTHO05D009031 0.0e+00 1109.4 812 66.5
Eucgr.K03449 Eucalyptus grandis HOM05D000161 ORTHO05D009031 0.0e+00 1108.6 811 66.0
TAR362G0905 Trochodendron aralioides HOM05D000161 ORTHO05D009031 0.0e+00 1108.6 862 65.0
Manes.05G066300 Manihot esculenta HOM05D000161 ORTHO05D009031 0.0e+00 1107.8 841 65.8
CANSAT25G3411 Cannabis sativa HOM05D000161 ORTHO05D009031 0.0e+00 1107.0 837 65.6
Cfa005996 Carpinus fangiana HOM05D000161 ORTHO05D009031 0.0e+00 1106.7 811 66.2
vmacro02493 Vaccinium macrocarpon HOM05D000161 ORTHO05D009031 0.0e+00 1106.7 826 66.3
Glyma.03G210900 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1102.4 810 67.5
SGA_v2.0_scaffold1G00398 Striga asiatica HOM05D000161 ORTHO05D009031 0.0e+00 1102.0 811 66.1
Aqoxy2G03055 Aquilegia oxysepala HOM05D000161 ORTHO05D009031 0.0e+00 1101.7 865 63.5
Medtr7g108310 Medicago truncatula HOM05D000161 ORTHO05D009031 0.0e+00 1100.5 805 67.2
Phvul.001G204000 Phaseolus vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1100.5 859 64.4
Potri.002G209900 Populus trichocarpa HOM05D000161 ORTHO05D009031 0.0e+00 1100.5 805 67.2
VMungo1383G3032 Vigna mungo HOM05D000161 ORTHO05D009031 0.0e+00 1099.3 816 66.5
Lj2C1188T5 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1096.6 808 66.7
PSO170G2241 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1096.6 865 63.5
PGR044G2096 Punica granatum HOM05D000161 ORTHO05D009031 0.0e+00 1093.6 813 65.3
CsaV3_7G028900 Cucumis sativus L. HOM05D000161 ORTHO05D009031 0.0e+00 1090.1 795 66.2
ClCG09G006240 Citrullus lanatus HOM05D000161 ORTHO05D009031 0.0e+00 1089.3 830 65.1
CAN.G1777.2 Capsicum annuum HOM05D000161 ORTHO05D009031 0.0e+00 1086.6 810 66.4
Migut.D00162 Erythranthe guttata HOM05D000161 ORTHO05D009031 0.0e+00 1085.9 815 66.0
Glyma.19G208100 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1084.7 792 67.3
SalBow3G3810 Salvia bowleyana HOM05D000161 ORTHO05D009031 0.0e+00 1083.6 810 66.3
RcHm_v2.0_Chr6g0293001 Rosa chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1082.4 812 66.4
PGSC0003DMG400011361 Solanum tuberosum HOM05D000161 ORTHO05D009031 0.0e+00 1082.0 801 66.3
Lalb_Chr18g0047291 Lupinus albus HOM05D000161 ORTHO05D009031 0.0e+00 1080.5 807 66.2
FvH4_2g25030 Fragaria vesca HOM05D000161 ORTHO05D009031 0.0e+00 1079.7 812 66.4
TPR.G9287 Trifolium pratense HOM05D000161 ORTHO05D009031 0.0e+00 1078.2 805 65.8
Solyc09g074660.3 Solanum lycopersicum HOM05D000161 ORTHO05D009031 0.0e+00 1077.0 837 64.0
Haze_04852 Corylus avellana HOM05D000161 ORTHO05D009031 0.0e+00 1076.2 877 62.3
PSO210G6500 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1076.2 895 60.9
Rhsim13G0015500 Rhododendron simsii HOM05D000161 ORTHO05D009031 0.0e+00 1076.2 842 63.8
Ca_09126_v3 Cicer arietinum L. HOM05D000161 ORTHO05D009031 0.0e+00 1075.5 804 65.8
Lj1g0007269 Lotus japonicus HOM05D000161 ORTHO05D009031 0.0e+00 1075.1 790 66.2
Sopen09g029540 Solanum pennellii HOM05D000161 ORTHO05D009031 5.7e-312 1073.9 785 66.5
Psat3g023920 Pisum sativum HOM05D000161 ORTHO05D009031 1.1e-311 1073.2 816 64.8
ECA236G0218 Erigeron canadensis HOM05D000161 ORTHO05D009031 4.0e-311 1071.2 793 66.1
Carub.0006s3386 Capsella rubella HOM05D000161 ORTHO05D009031 1.3e-309 1066.2 855 62.5
HanXRQChr11g0350111 Helianthus annuus HOM05D000161 ORTHO05D009031 1.3e-309 1066.2 868 61.8
A09p02490 Brassica napus HOM05D000161 ORTHO05D009031 1.6e-309 1065.8 845 63.4
BraA09t35896Z Brassica rapa HOM05D000161 ORTHO05D009031 1.6e-309 1065.8 844 63.5
Sed0007225 Sechium edule HOM05D000161 ORTHO05D009031 1.6e-309 1065.8 802 64.6
FAN24G1124 Fragaria x ananassa HOM05D000161 ORTHO05D009031 2.2e-309 1065.4 802 66.5
AL6G49740 Arabidopsis lyrata HOM05D000161 ORTHO05D009031 2.8e-309 1065.1 836 64.0
BcaB01g01973 Brassica carinata HOM05D000161 ORTHO05D009031 1.4e-308 1062.8 836 63.8
C09p02590 Brassica napus HOM05D000161 ORTHO05D009031 1.8e-308 1062.4 844 63.4
BolC9t53189H Brassica oleracea HOM05D000161 ORTHO05D009031 1.8e-308 1062.4 810 64.9
Sabra02G0150400 Salix brachista HOM05D000161 ORTHO05D009031 3.1e-308 1061.6 824 64.6
Sp6g03230 Schrenkiella parvula HOM05D000161 ORTHO05D009031 6.9e-308 1060.4 836 63.6
BcaC04g23994 Brassica carinata HOM05D000161 ORTHO05D009031 1.2e-307 1059.7 811 65.0
FAN27G3195 Fragaria x ananassa HOM05D000161 ORTHO05D009031 1.2e-307 1059.7 814 66.0
Nn3g21368 Nelumbo nucifera HOM05D000161 ORTHO05D009031 5.9e-307 1057.4 808 63.6
Thhalv10028434m.g Eutrema salsugineum HOM05D000161 ORTHO05D009031 1.7e-306 1055.8 836 64.1
CARHR251630 Cardamine hirsuta HOM05D000161 ORTHO05D009031 6.5e-306 1053.9 863 62.2
Nitab4.5_0001102g0080 Nicotiana tabacum HOM05D000161 ORTHO05D009031 1.1e-305 1053.1 810 64.7
unitig_747.g21791 Utricularia gibba HOM05D000161 ORTHO05D009031 6.1e-304 1047.3 864 60.8
Nitab4.5_0005245g0010 Nicotiana tabacum HOM05D000161 ORTHO05D009031 3.9e-303 1044.6 860 62.0
Oeu034814.1 Olea europaea HOM05D000161 ORTHO05D009031 2.8e-301 1038.5 802 65.7
Lsat_1_v5_gn_8_54360 Lactuca sativa HOM05D000161 ORTHO05D009031 3.8e-298 1028.1 810 63.6
ATR0706G016 Amborella trichopoda HOM05D000161 ORTHO05D009031 1.1e-294 1016.5 787 63.4
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 7.4e-294 1013.8 857 61.3
MBI19_g24003_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D009031 1.3e-290 1003.0 827 62.2
QL12p024497 Quercus lobata HOM05D000161 ORTHO05D009031 2.5e-289 998.8 731 67.4
arahy.Tifrunner.gnm1.ann1.4BF7AZ Arachis hypogaea HOM05D000161 ORTHO05D009031 1.2e-286 989.9 744 66.0
MELO3C016048.2 Cucumis melo HOM05D000161 ORTHO05D009031 9.1e-284 980.3 730 65.8
Lj1A36T49 Lonicera japonica HOM05D000161 ORTHO05D009031 7.7e-283 977.2 781 62.7
Cpa.g.sc441.2 Carica papaya HOM05D000161 ORTHO05D009031 1.2e-280 969.9 696 68.0
Peaxi162Scf00067g01926 Petunia axillaris HOM05D000161 ORTHO05D009031 1.2e-280 969.9 739 64.8
DCAR_018348 Daucus carota HOM05D000161 ORTHO05D009031 1.2e-278 963.4 778 61.4
AT4G03200 Arabidopsis thaliana HOM05D000161 ORTHO05D009031 6.3e-269 931.0 729 63.1
AUR62008570 Chenopodium quinoa HOM05D000161 ORTHO05D009031 3.6e-264 915.2 720 67.1
CSS0042056 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D009031 1.2e-262 910.2 662 68.7
Mapoly0086s0039 Marchantia polymorpha HOM05D000161 ORTHO05D009031 8.0e-256 887.5 784 54.5
Pp3c3_16890 Physcomitrium patens HOM05D000161 ORTHO05D009031 1.9e-252 876.3 801 54.4
AagrBONN_evm.TU.Sc2ySwM_362.238 Anthoceros agrestis HOM05D000161 ORTHO05D009031 4.0e-247 858.6 801 53.4
arahy.Tifrunner.gnm1.ann1.Z5FZN7 Arachis hypogaea HOM05D000161 ORTHO05D009031 1.4e-239 833.6 650 63.8
Zm00001eb141990 Zea mays HOM05D000161 ORTHO05D009031 2.7e-235 819.3 679 60.4
HPP92_011821 Vanilla planifolia HOM05D000161 ORTHO05D009031 4.9e-221 771.9 667 57.4
CBR_g39419 Chara braunii HOM05D000019 ORTHO05D000048 4.2e-196 689.1 696 49.3
CDE09G1084 Ceratophyllum demersum HOM05D000161 ORTHO05D009031 3.6e-187 659.4 567 57.7
Cre07.g331250 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D009031 2.0e-145 520.8 843 37.2
SMO011G0044 Selaginella moellendorffii HOM05D000161 ORTHO05D009031 4.4e-137 493.0 354 63.8
Lj1A204T33 Lonicera japonica HOM05D000161 ORTHO05D009031 4.6e-134 483.0 630 44.8
SEGI_38220 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 1.8e-114 417.9 344 61.6
Os01g0935600 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D009031 8.2e-83 312.8 263 60.5
arahy.Tifrunner.gnm1.ann1.S4ZP24 Arachis hypogaea HOM05D000161 ORTHO05D009031 6.7e-77 293.1 315 52.1
EL10Ac6g14352 Beta vulgaris HOM05D000161 ORTHO05D009031 2.7e-70 271.2 148 84.5
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 2.6e-65 254.6 283 49.1
arahy.Tifrunner.gnm1.ann1.FVA5UA Arachis hypogaea HOM05D000161 ORTHO05D009031 1.8e-58 231.9 250 49.2
EL10Ac7g17602 Beta vulgaris HOM05D000161 ORTHO05D039009 4.2e-55 220.7 122 83.6
SEGI_26615 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 1.4e-42 179.1 127 64.6
arahy.Tifrunner.gnm1.ann1.NYYR6I Arachis hypogaea HOM05D000161 ORTHO05D038839 2.0e-41 175.3 135 60.7
HPP92_011833 Vanilla planifolia HOM05D000161 ORTHO05D036718 1.4e-37 162.5 110 68.2
SEGI_06948 Sequoiadendron giganteum HOM05D000161 ORTHO05D038839 4.1e-26 124.4 107 52.3
arahy.Tifrunner.gnm1.ann1.A1CTBX Arachis hypogaea HOM05D000161 ORTHO05D083724 3.9e-24 117.9 192 40.1
EL10Ac9g20878 Beta vulgaris HOM05D008595 ORTHO05D010945 4.0e-21 107.8 62 83.9
Lsat_1_v5_gn_2_56220 Lactuca sativa HOM05D000161 ORTHO05D229717 3.4e-20 104.8 136 44.1
SEGI_02592 Sequoiadendron giganteum HOM05D000161 ORTHO05D039009 1.0e-16 93.2 56 82.1
Lj1A206G50 Lonicera japonica HOM05D000161 ORTHO05D235408 8.1e-14 83.6 156 37.2
arahy.Tifrunner.gnm1.ann1.0H5KQ4 Arachis hypogaea HOM05D000161 ORTHO05D009031 1.5e-12 79.3 43 79.1
Medtr3g438040 Medicago truncatula HOM05D000161 ORTHO05D036718 1.1e-10 73.2 46 73.9


User provided reference genes

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