Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 5.0e-232 807.4 398 100.0
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 4.8e-134 481.9 431 60.1
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 9.1e-133 477.6 431 59.6
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 1.9e-130 469.9 433 59.8
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 1.3e-110 404.1 421 54.2
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 3.9e-99 365.9 403 49.9
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 8.9e-96 354.8 409 49.1
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 3.4e-95 352.8 434 47.0
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.1e-93 347.8 395 50.4
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 7.1e-93 345.1 403 47.9
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 2.1e-92 343.6 407 48.2
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 6.0e-92 342.0 321 54.2
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 7.8e-92 341.7 395 49.4
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 1.0e-91 341.3 389 48.1
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.7e-91 340.5 395 48.9
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 1.7e-91 340.5 379 50.7
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 3.9e-91 339.3 395 49.6
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 8.6e-91 338.2 389 46.5
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.5e-90 336.7 399 46.1
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 3.3e-90 336.3 407 47.7
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 3.3e-90 336.3 395 49.4
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 4.3e-90 335.9 416 45.2
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 4.3e-90 335.9 403 47.9
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 1.1e-88 331.3 392 48.0
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 6.8e-88 328.6 395 49.1
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 1.2e-87 327.8 424 44.1
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 1.5e-87 327.4 401 46.1
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 2.0e-87 327.0 405 47.2
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 3.4e-87 326.2 430 44.0
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 3.4e-87 326.2 436 44.5
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 2.2e-86 323.6 428 44.2
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 2.2e-86 323.6 393 48.9
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 2.9e-86 323.2 384 46.6
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 3.7e-86 322.8 397 45.1
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 3.7e-86 322.8 387 47.8
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 3.7e-86 322.8 408 45.1
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 3.7e-86 322.8 427 43.3
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 6.4e-86 322.0 429 43.4
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 1.9e-85 320.5 394 48.2
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 3.2e-85 319.7 398 45.5
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 3.2e-85 319.7 394 47.7
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 4.1e-85 319.3 391 45.8
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 5.4e-85 318.9 304 52.6
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 7.1e-85 318.5 391 46.0
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 9.2e-85 318.2 394 47.7
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 9.2e-85 318.2 368 47.6
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 1.2e-84 317.8 408 45.6
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 2.1e-84 317.0 405 44.9
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 2.1e-84 317.0 379 47.2
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 2.7e-84 316.6 400 45.8
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.5e-84 316.2 289 54.3
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 4.6e-84 315.8 388 46.1
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 1.0e-83 314.7 394 48.0
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 1.7e-83 313.9 386 45.9
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 2.3e-83 313.5 387 45.5
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 3.0e-83 313.2 323 49.2
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 5.1e-83 312.4 453 41.3
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 5.1e-83 312.4 478 40.0
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 5.1e-83 312.4 404 44.3
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 1.9e-82 310.5 370 46.2
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 2.5e-82 310.1 399 44.4
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 2.5e-82 310.1 395 46.8
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 5.6e-82 308.9 396 45.5
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 7.3e-82 308.5 402 44.8
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 2.1e-81 307.0 409 43.8
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 3.6e-81 306.2 376 44.4
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 1.1e-80 304.7 402 44.0
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 1.4e-80 304.3 418 41.1
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 1.4e-80 304.3 305 49.5
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 1.2e-79 301.2 370 45.4
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 2.0e-79 300.4 368 47.0
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 3.4e-79 299.7 383 44.1
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 4.4e-79 299.3 341 46.6
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 5.8e-79 298.9 400 43.2
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 2.9e-78 296.6 416 43.0
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 2.9e-78 296.6 416 43.0
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 2.9e-78 296.6 419 40.3
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 3.8e-78 296.2 420 40.5
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 4.9e-78 295.8 375 42.1
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 1.1e-77 294.7 317 47.9
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 1.9e-77 293.9 409 42.5
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 2.4e-77 293.5 428 42.3
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 2.4e-77 293.5 428 42.3
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 3.2e-77 293.1 365 46.0
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 4.2e-77 292.7 341 46.0
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 1.6e-76 290.8 381 44.4
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 1.7e-75 287.3 295 49.5
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 3.9e-75 286.2 415 41.7
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 1.3e-73 281.2 381 42.8
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 2.1e-73 280.4 374 44.4
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 2.8e-73 280.0 410 42.7
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 4.8e-73 279.3 399 42.1
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 5.3e-72 275.8 408 41.7
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 9.0e-72 275.0 384 42.7
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 4.4e-71 272.7 306 47.7
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 2.9e-70 270.0 425 40.5
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 1.6e-68 264.2 440 38.4
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 7.9e-68 261.9 440 36.6
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 1.7e-67 260.8 397 37.3
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 3.0e-67 260.0 403 39.0
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 5.1e-67 259.2 407 37.6
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 5.1e-67 259.2 301 44.5
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 5.1e-67 259.2 350 42.0
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 1.3e-65 254.6 295 47.8
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 8.1e-65 251.9 356 40.4
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 1.4e-64 251.1 295 47.5
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 1.4e-64 251.1 295 47.5
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 4.0e-64 249.6 404 41.1
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 2.6e-63 246.9 303 47.5
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 4.5e-63 246.1 296 47.0
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 5.8e-63 245.7 296 47.0
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 5.8e-63 245.7 374 39.0
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 2.7e-60 236.9 315 43.8
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 2.5e-58 230.3 334 40.7
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 7.4e-58 228.8 313 41.9
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.7e-54 217.6 314 39.5
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 3.8e-54 216.5 167 61.1
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 9.3e-53 211.8 289 45.3
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 1.8e-51 207.6 266 44.0
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 2.3e-51 207.2 268 44.8
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 7.9e-44 182.2 233 42.5
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 2.3e-43 180.6 236 44.1
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 5.7e-42 176.0 312 35.6
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 4.8e-41 172.9 205 45.9
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 6.3e-41 172.6 308 38.3
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 2.0e-39 167.5 300 33.7
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 1.1e-37 161.8 240 42.9
Cre01.g049400 Chlamydomonas reinhardtii HOM05D004413 ORTHO05D005199 2.1e-36 157.5 282 35.1
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 1.3e-33 148.3 305 35.1
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.1e-32 145.2 214 38.3
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 1.4e-32 144.8 156 50.0
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.8e-32 144.4 144 52.8
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 7.7e-31 139.0 160 48.1
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 1.7e-30 137.9 274 31.0
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 6.5e-30 136.0 214 36.4
Actinidia21570 Actinidia chinensis HOM05D004413 ORTHO05D005199 9.7e-26 122.1 137 46.7
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 5.3e-24 116.3 186 41.9
GSVIVG01027710001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.9e-21 107.8 135 44.4
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 2.3e-19 100.9 102 48.0
DCAR_015690 Daucus carota HOM05D004413 ORTHO05D005199 1.5e-18 98.2 217 34.1
Actinidia15863 Actinidia chinensis HOM05D004413 ORTHO05D005199 2.6e-18 97.4 115 46.1
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.8e-16 91.3 63 61.9
TWI73G0758 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 5.3e-16 89.7 96 51.0
TAR633G2579 Trochodendron aralioides HOM05D004413 ORTHO05D005199 2.0e-15 87.8 92 46.7
MCO07G333 Micromonas commoda HOM05D004413 ORTHO05D005199 1.3e-14 85.1 286 25.2
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.3e-14 85.1 59 62.7
Manes.10G149900 Manihot esculenta HOM05D000073 ORTHO05D000033 1.7e-14 84.7 91 50.5
Actinidia15864 Actinidia chinensis HOM05D004413 ORTHO05D005199 6.5e-14 82.8 80 47.5
PRCOL_00005718 Prasinoderma coloniale HOM05D004413 ORTHO05D005199 1.9e-13 81.3 169 30.8
A08p37250 Brassica napus HOM05D004413 ORTHO05D005199 3.2e-13 80.5 85 48.2
HanXRQChr11g0328201 Helianthus annuus HOM05D004413 ORTHO05D005199 8.0e-12 75.9 58 60.3
GSVIVG01027696001 Vitis vinifera HOM05D004413 ORTHO05D005199 8.8e-11 72.4 48 62.5
GSVIVG01026105001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.2e-10 72.0 50 66.0
QL04p000430 Quercus lobata HOM05D004413 ORTHO05D005199 1.5e-10 71.6 192 30.7
GSVIVG01012403001 Vitis vinifera HOM05D004413 ORTHO05D005199 5.7e-10 69.7 50 64.0
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.7e-09 68.2 53 54.7
GSVIVG01027714001 Vitis vinifera HOM05D004413 ORTHO05D005199 7.7e-07 59.3 185 30.8


User provided reference genes

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