Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 6.3e-104 380.9 215 100.0
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 1.4e-82 310.1 217 83.4
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 5.2e-82 308.1 216 81.9
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 2.4e-79 299.3 217 82.5
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 5.7e-73 278.1 216 74.5
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 4.7e-67 258.5 236 66.9
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 2.6e-65 252.7 216 73.1
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 7.7e-62 241.1 217 69.1
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 3.3e-60 235.7 214 68.2
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 5.6e-60 235.0 218 67.0
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 7.3e-60 234.6 215 66.5
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 9.5e-60 234.2 219 67.6
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 9.5e-60 234.2 215 66.0
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 2.8e-59 232.6 217 67.7
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 3.6e-59 232.3 215 65.1
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 4.7e-59 231.9 219 68.0
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 6.1e-59 231.5 220 68.2
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 1.4e-58 230.3 217 66.8
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 1.4e-58 230.3 216 65.7
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 1.8e-58 229.9 222 65.3
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 2.3e-58 229.6 216 65.3
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.0e-58 229.2 215 63.7
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 6.8e-58 228.0 213 64.3
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 8.9e-58 227.6 229 65.1
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 2.0e-57 226.5 212 69.3
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 2.0e-57 226.5 215 66.0
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 2.0e-57 226.5 215 66.0
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 2.6e-57 226.1 238 61.8
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 2.6e-57 226.1 216 65.7
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 3.4e-57 225.7 215 67.0
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.4e-57 225.7 224 66.1
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 5.7e-57 224.9 216 66.2
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 3.7e-56 222.2 224 64.3
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 4.9e-56 221.9 225 62.7
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 4.9e-56 221.9 225 62.7
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 6.4e-56 221.5 221 63.3
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 6.4e-56 221.5 231 57.6
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 6.4e-56 221.5 218 62.8
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 8.3e-56 221.1 228 61.8
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 1.1e-55 220.7 233 61.4
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 1.8e-55 219.9 216 62.5
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 1.8e-55 219.9 216 67.1
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 3.2e-55 219.2 215 62.8
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 5.4e-55 218.4 215 64.7
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 2.0e-54 216.5 231 59.7
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 4.6e-54 215.3 231 59.7
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 4.6e-54 215.3 225 64.9
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 4.6e-54 215.3 215 63.3
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 5.9e-54 214.9 216 65.3
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 5.9e-54 214.9 219 64.4
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 7.8e-54 214.5 231 58.4
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 7.8e-54 214.5 231 58.4
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 7.8e-54 214.5 216 65.3
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.0e-53 214.2 231 60.6
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 2.3e-53 213.0 240 60.0
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 2.3e-53 213.0 240 60.0
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 2.3e-53 213.0 216 61.6
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 6.6e-53 211.5 216 64.4
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 8.6e-53 211.1 218 60.6
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 1.1e-52 210.7 216 64.4
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 1.1e-52 210.7 215 62.8
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 1.5e-52 210.3 198 66.7
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 1.5e-52 210.3 211 65.4
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 1.9e-52 209.9 215 63.3
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 2.5e-52 209.5 234 59.0
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 3.3e-52 209.1 127 83.5
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 3.3e-52 209.1 228 60.1
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 4.3e-52 208.8 225 62.2
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 4.3e-52 208.8 211 62.6
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 5.6e-52 208.4 211 64.0
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 7.3e-52 208.0 128 84.4
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 9.5e-52 207.6 127 84.3
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 1.6e-51 206.8 217 61.8
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 2.1e-51 206.5 217 61.3
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 3.6e-51 205.7 218 61.9
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 3.6e-51 205.7 219 60.7
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 8.0e-51 204.5 128 83.6
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 8.0e-51 204.5 229 59.4
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 8.0e-51 204.5 231 60.6
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 1.4e-50 203.8 127 84.3
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 1.8e-50 203.4 215 60.5
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 2.3e-50 203.0 214 61.7
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 4.0e-50 202.2 215 63.3
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 4.0e-50 202.2 215 62.3
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 6.8e-50 201.4 231 57.6
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 8.9e-50 201.1 204 63.2
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 8.9e-50 201.1 234 57.3
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 8.9e-50 201.1 127 81.9
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 2.6e-49 199.5 221 56.6
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 7.5e-49 198.0 215 59.1
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 6.4e-48 194.9 266 52.3
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 1.1e-47 194.1 117 82.9
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 3.5e-46 189.1 128 78.1
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 4.6e-46 188.7 128 78.1
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 6.0e-46 188.3 127 76.4
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 1.7e-45 186.8 128 77.3
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 2.3e-45 186.4 127 77.2
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 3.0e-45 186.0 219 58.9
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 6.6e-45 184.9 222 58.6
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 1.1e-44 184.1 195 63.6
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 1.5e-44 183.7 205 58.0
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 1.5e-44 183.7 106 88.7
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 1.9e-44 183.3 125 77.6
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 2.5e-44 183.0 126 76.2
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 2.5e-44 183.0 126 76.2
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 3.3e-44 182.6 126 75.4
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 7.3e-44 181.4 126 75.4
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 9.5e-44 181.0 128 74.2
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 2.1e-43 179.9 254 51.6
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 2.8e-43 179.5 216 57.9
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 8.1e-43 177.9 203 54.2
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 8.1e-43 177.9 109 83.5
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 8.1e-43 177.9 214 53.7
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 3.1e-42 176.0 222 50.5
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 3.1e-42 176.0 222 55.9
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 2.7e-38 162.9 216 49.5
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 3.5e-38 162.5 208 51.0
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 4.6e-38 162.2 126 69.8
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 1.0e-37 161.0 194 57.2
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 1.0e-37 161.0 129 71.3
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 1.1e-36 157.5 222 51.4
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 1.9e-36 156.8 95 81.1
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.3e-36 156.0 181 60.8
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 1.6e-35 153.7 195 55.4
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 3.6e-35 152.5 126 66.7
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 1.1e-34 151.0 109 72.5
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 2.3e-34 149.8 109 73.4
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 3.1e-34 149.4 127 63.0
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 2.0e-33 146.7 102 76.5
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 1.3e-32 144.1 122 63.9
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 1.3e-32 144.1 186 54.3
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 4.1e-31 139.0 218 44.5
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 5.4e-31 138.7 223 45.3
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 5.4e-31 138.7 223 45.3
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 9.2e-31 137.9 203 50.2
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 7.8e-30 134.8 133 57.1
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 6.6e-29 131.7 84 79.8
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 1.9e-28 130.2 128 62.5
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 2.5e-28 129.8 223 41.3
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 1.6e-27 127.1 215 44.2
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 6.2e-27 125.2 122 57.4
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 8.1e-27 124.8 227 45.8
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 8.1e-27 124.8 177 54.2
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 1.4e-26 124.0 103 60.2
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 6.4e-24 115.2 141 58.9
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 3.5e-22 109.4 151 55.0
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 4.6e-22 109.0 82 70.7
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 1.9e-20 103.6 79 68.4
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 9.6e-20 101.3 141 56.0
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 9.0e-18 94.7 170 46.5
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 1.6e-14 84.0 48 79.2
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 1.8e-13 80.5 65 61.5
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 2.5e-12 76.6 88 45.5
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 8.1e-11 71.6 148 43.2
Sc19g0001960 Simmondsia chinensis HOM05D004341 ORTHO05D005075 1.1e-10 71.2 111 55.9
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 1.5e-09 67.4 104 33.7
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 5.8e-09 65.5 94 46.8
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 9.9e-09 64.7 41 65.9
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 2.9e-08 63.2 37 73.0
Dinv14194 Davidia involucrata HOM05D004341 ORTHO05D005075 4.2e-07 59.3 115 52.2
BcaB03g11666 Brassica carinata HOM05D004341 ORTHO05D005075 5.5e-07 58.9 45 68.9
TWI63G1746 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 1.2e-06 57.8 111 44.1


User provided reference genes

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