Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g205740 Amaranthus hybridus HOM05D007280 ORTHO05D009108 1.4e-185 653.7 621 100.0
Ah.13g070140 Amaranthus hybridus HOM05D007280 ORTHO05D009108 9.6e-113 411.8 355 63.4
AUR62019383 Chenopodium quinoa HOM05D007280 ORTHO05D009108 4.8e-96 356.3 346 56.1
AUR62006107 Chenopodium quinoa HOM05D007280 ORTHO05D009108 1.8e-95 354.4 346 56.4
Nn4g24834 Nelumbo nucifera HOM05D007280 ORTHO05D009108 2.0e-57 228.0 357 39.8
Hma1.2p1_0319F.1_g123900 Hydrangea macrophylla HOM05D007280 ORTHO05D009108 4.4e-57 226.9 318 41.8
Lalb_Chr17g0338341 Lupinus albus HOM05D007280 ORTHO05D009108 1.4e-55 221.9 362 37.3
Solyc04g008570.4 Solanum lycopersicum HOM05D007280 ORTHO05D009108 1.8e-55 221.5 273 42.9
Sopen04g003730 Solanum pennellii HOM05D007280 ORTHO05D009108 3.1e-55 220.7 273 42.5
PGSC0003DMG400031369 Solanum tuberosum HOM05D007280 ORTHO05D009108 9.1e-55 219.2 273 42.5
Lj3P855T51 Lonicera japonica HOM05D007280 ORTHO05D009108 1.6e-54 218.4 307 40.4
Thecc.09G239200 Theobroma cacao HOM05D007280 ORTHO05D009108 1.6e-54 218.4 356 37.1
Peaxi162Scf00329g00097 Petunia axillaris HOM05D007280 ORTHO05D009108 2.0e-54 218.0 272 42.3
VMungo1215G2162 Vigna mungo HOM05D007280 ORTHO05D009108 7.7e-54 216.1 321 38.3
Haze_01575 Corylus avellana HOM05D007280 ORTHO05D009108 1.0e-53 215.7 306 41.2
Cfa015100 Carpinus fangiana HOM05D007280 ORTHO05D009108 2.9e-53 214.2 312 40.7
CAN.G458.1 Capsicum annuum HOM05D007280 ORTHO05D009108 1.1e-52 212.2 274 43.4
Sabra08G0108200 Salix brachista HOM05D007280 ORTHO05D009108 1.5e-52 211.8 358 35.2
Lj2g0005518 Lotus japonicus HOM05D007280 ORTHO05D009108 1.9e-52 211.5 318 37.7
Medtr1g033840 Medicago truncatula HOM05D007280 ORTHO05D009108 2.5e-52 211.1 356 37.9
Eucgr.B02618 Eucalyptus grandis HOM05D007280 ORTHO05D009108 3.2e-52 210.7 326 39.3
Prupe.1G342100 Prunus persica HOM05D007280 ORTHO05D009108 3.2e-52 210.7 362 36.7
Cpa.g.sc2.97 Carica papaya HOM05D007280 ORTHO05D009108 5.5e-52 209.9 309 40.5
Glyma.20G010600 Glycine max HOM05D007280 ORTHO05D009108 5.5e-52 209.9 311 38.3
Potri.010G098700 Populus trichocarpa HOM05D007280 ORTHO05D009108 5.5e-52 209.9 309 38.8
Psat6g095680 Pisum sativum HOM05D007280 ORTHO05D009108 7.2e-52 209.5 342 37.4
TPR.G35854 Trifolium pratense HOM05D007280 ORTHO05D009108 1.6e-51 208.4 330 38.5
Ca_12458_v3 Cicer arietinum L. HOM05D007280 ORTHO05D009108 2.1e-51 208.0 335 37.0
TWI74G1184 Tripterygium wilfordii HOM05D007280 ORTHO05D009108 2.7e-51 207.6 358 34.1
FAN07G2371 Fragaria x ananassa HOM05D007280 ORTHO05D009108 3.6e-51 207.2 346 35.3
Phvul.003G013000 Phaseolus vulgaris HOM05D007280 ORTHO05D009108 3.6e-51 207.2 321 37.7
SalBow3G1417 Salvia bowleyana HOM05D007280 ORTHO05D009108 4.7e-51 206.8 310 39.4
THA.LOC104819105 Tarenaya hassleriana HOM05D007280 ORTHO05D009108 4.7e-51 206.8 315 36.8
FAN12G0470 Fragaria x ananassa HOM05D007280 ORTHO05D009108 1.0e-50 205.7 349 35.2
HanXRQChr16g0526501 Helianthus annuus HOM05D007280 ORTHO05D009108 1.2e-49 202.2 350 35.7
FvH4_4g36140 Fragaria vesca HOM05D007280 ORTHO05D009108 2.0e-49 201.4 349 35.0
MD16G1008400 Malus domestica HOM05D007280 ORTHO05D009108 9.8e-49 199.1 362 35.4
Rhsim04G0168900 Rhododendron simsii HOM05D007280 ORTHO05D009108 9.8e-49 199.1 362 37.8
DCAR_023520 Daucus carota HOM05D007280 ORTHO05D009108 1.7e-48 198.4 339 36.6
PGR044G2110 Punica granatum HOM05D007280 ORTHO05D009108 8.3e-48 196.1 364 35.2
CSS0013384 Camellia sinensis var. sinensis HOM05D007280 ORTHO05D009108 2.4e-47 194.5 380 35.5
Glyma.07G177100 Glycine max HOM05D007280 ORTHO05D009108 4.1e-47 193.7 301 36.2
Cc11_g02870 Coffea canephora HOM05D007280 ORTHO05D009108 7.0e-47 193.0 362 35.1
MSTRG.17728 Avicennia marina HOM05D007280 ORTHO05D009108 1.6e-46 191.8 341 36.1
Aa31sc65G20 Aethionema arabicum HOM05D007280 ORTHO05D009108 2.7e-46 191.0 321 34.6
Manes.17G093400 Manihot esculenta HOM05D007280 ORTHO05D009108 5.0e-45 186.8 288 37.2
MD13G1010900 Malus domestica HOM05D007280 ORTHO05D009108 6.5e-45 186.4 278 37.4
CDE08G0845 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 5.5e-44 183.3 341 34.6
Ciclev10004581m.g Citrus clementina HOM05D007280 ORTHO05D009108 6.1e-43 179.9 353 34.8
Sp6g30250 Schrenkiella parvula HOM05D007280 ORTHO05D009108 1.0e-42 179.1 297 34.3
AL6G24390 Arabidopsis lyrata HOM05D007280 ORTHO05D009108 1.8e-42 178.3 353 32.6
A02p02170 Brassica napus HOM05D007280 ORTHO05D009108 3.0e-42 177.6 268 35.4
Sc14g0006690 Simmondsia chinensis HOM05D007280 ORTHO05D009108 5.2e-42 176.8 261 39.1
BraA02t05191Z Brassica rapa HOM05D007280 ORTHO05D009108 6.8e-42 176.4 268 35.1
AT5G13770 Arabidopsis thaliana HOM05D007280 ORTHO05D009108 8.8e-42 176.0 353 32.6
C02p06420 Brassica napus HOM05D007280 ORTHO05D009108 2.6e-41 174.5 269 35.3
BolC2t06588H Brassica oleracea HOM05D007280 ORTHO05D009108 2.6e-41 174.5 269 35.3
Thhalv10016019m.g Eutrema salsugineum HOM05D007280 ORTHO05D009108 4.4e-41 173.7 356 32.9
MELO3C027064.2 Cucumis melo HOM05D007280 ORTHO05D009108 2.8e-40 171.0 276 36.2
TAR622G0173 Trochodendron aralioides HOM05D007280 ORTHO05D009108 6.3e-40 169.9 310 35.2
Carub.0006s1195 Capsella rubella HOM05D007280 ORTHO05D009108 8.3e-40 169.5 320 31.9
PSO782G1316 Papaver somniferum HOM05D007280 ORTHO05D009108 1.1e-39 169.1 281 35.6
Sabra08G0108600 Salix brachista HOM05D007280 ORTHO05D009108 1.8e-39 168.3 358 31.3
Duzib168G0083 Durio zibethinus HOM05D007280 ORTHO05D009108 2.4e-39 167.9 234 39.7
Lsat_1_v5_gn_3_27640 Lactuca sativa HOM05D007280 ORTHO05D009108 4.1e-39 167.2 303 33.0
QL03p041451 Quercus lobata HOM05D007280 ORTHO05D009108 5.4e-39 166.8 266 37.6
ECA246G2688 Erigeron canadensis HOM05D007280 ORTHO05D009108 7.0e-39 166.4 272 34.9
Gorai.006G126500 Gossypium raimondii HOM05D007280 ORTHO05D009108 7.0e-39 166.4 358 32.4
Gohir.D09G108900 Gossypium hirsutum HOM05D007280 ORTHO05D009108 9.1e-39 166.0 358 32.4
Gohir.D06G095050 Gossypium hirsutum HOM05D007280 ORTHO05D009108 1.6e-38 165.2 352 31.5
CsaV3_5G017390 Cucumis sativus L. HOM05D007280 ORTHO05D009108 2.0e-38 164.9 319 33.9
Potri.008G142900 Populus trichocarpa HOM05D007280 ORTHO05D009108 3.5e-38 164.1 258 38.4
Sabra10G0071200 Salix brachista HOM05D007280 ORTHO05D009108 1.0e-37 162.5 265 37.0
Sed0008466 Sechium edule HOM05D007280 ORTHO05D009108 1.0e-37 162.5 274 34.3
ATR0705G126 Amborella trichopoda HOM05D007280 ORTHO05D009108 2.3e-37 161.4 277 35.4
Gohir.A09G112200 Gossypium hirsutum HOM05D007280 ORTHO05D009108 3.8e-37 160.6 269 35.3
PSO063G1027 Papaver somniferum HOM05D007280 ORTHO05D009108 5.0e-37 160.2 281 34.2
MBI03_g37599_MAGBIO Magnolia biondii HOM05D007280 ORTHO05D009108 8.6e-37 159.5 245 40.0
Lsat_1_v5_gn_4_26101 Lactuca sativa HOM05D007280 ORTHO05D009108 1.5e-36 158.7 243 35.4
ClCG01G006970 Citrullus lanatus HOM05D007280 ORTHO05D009108 2.5e-36 157.9 275 36.0
BcaNung04186 Brassica carinata HOM05D007280 ORTHO05D009108 4.2e-36 157.1 269 33.1
Migut.N02514 Erythranthe guttata HOM05D007280 ORTHO05D009108 2.6e-33 147.9 182 41.8
Dinv17118 Davidia involucrata HOM05D007280 ORTHO05D009108 1.3e-32 145.6 159 44.7
Oeu006355.1 Olea europaea HOM05D007280 ORTHO05D009108 1.7e-32 145.2 240 36.2
Os04g0583101 Oryza sativa ssp. japonica HOM05D007280 ORTHO05D009108 1.7e-32 145.2 310 32.3
CDE04G3512 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 1.1e-31 142.5 323 31.6
Zm00001eb072910 Zea mays HOM05D007280 ORTHO05D009108 4.6e-30 137.1 293 31.1
CARHR199670 Cardamine hirsuta HOM05D007280 ORTHO05D009108 1.8e-26 125.2 217 31.3
CiPaw.05G161600 Carya illinoinensis HOM05D007280 ORTHO05D009108 3.1e-26 124.4 281 32.4
COL.COLO4_36459 Corchorus olitorius HOM05D007280 ORTHO05D009108 3.4e-25 120.9 301 29.9
Aqoxy3G04194 Aquilegia oxysepala HOM05D007280 ORTHO05D009108 4.6e-22 110.5 266 30.5
GSVIVG01010259001 Vitis vinifera HOM05D007280 ORTHO05D009108 1.9e-20 105.1 287 26.1
GSVIVG01032336001 Vitis vinifera HOM05D007280 ORTHO05D009108 2.1e-19 101.7 250 27.2
QL11p025168 Quercus lobata HOM05D007280 ORTHO05D009108 2.9e-16 91.3 118 39.0
QL11p025101 Quercus lobata HOM05D007280 ORTHO05D009108 3.7e-16 90.9 125 41.6
RcHm_v2.0_Chr4g0445881 Rosa chinensis HOM05D007280 ORTHO05D009108 3.2e-15 87.8 348 27.0
Nitab4.5_0003882g0050 Nicotiana tabacum HOM05D007280 ORTHO05D009108 2.7e-14 84.7 132 40.2
SEGI_25718 Sequoiadendron giganteum HOM05D007280 ORTHO05D009108 1.7e-13 82.0 139 31.7
Nitab4.5_0000129g0410 Nicotiana tabacum HOM05D007280 ORTHO05D009108 5.1e-13 80.5 132 37.1
MBI03_g37600_MAGBIO Magnolia biondii HOM05D007280 ORTHO05D009108 2.1e-11 75.1 53 60.4
ECA234G4111 Erigeron canadensis HOM05D007280 ORTHO05D009108 4.7e-11 73.9 65 56.9
Ciclev10006779m.g Citrus clementina HOM05D007280 ORTHO05D009108 1.5e-09 68.9 48 64.6
FAN22G2182 Fragaria x ananassa HOM05D007280 ORTHO05D009108 5.8e-09 67.0 50 60.0


User provided reference genes

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