Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g203620 Amaranthus hybridus HOM05D004363 ORTHO05D005110 0.0e+00 1729.1 871 100.0
EL10Ac5g11738 Beta vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1332.4 864 78.4
AUR62041186 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1270.4 805 77.6
Hund10860 Selenicereus undatus HOM05D004363 ORTHO05D005110 0.0e+00 1179.1 806 73.9
AUR62030686 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1169.1 847 70.7
Sc01g0005470 Simmondsia chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1114.8 845 67.9
CSS0038425 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 6.1e-291 1004.2 846 60.9
Dinv31774 Davidia involucrata HOM05D004363 ORTHO05D005110 9.8e-289 996.9 847 60.9
Prupe.7G093600 Prunus persica HOM05D004363 ORTHO05D005110 4.1e-287 991.5 840 60.5
Ciclev10010925m.g Citrus clementina HOM05D004363 ORTHO05D005110 5.9e-286 987.6 849 60.2
Thecc.05G106200 Theobroma cacao HOM05D004363 ORTHO05D005110 2.3e-285 985.7 842 60.8
MD12G1041600 Malus domestica HOM05D004363 ORTHO05D005110 1.2e-283 979.9 851 60.3
Atru.chr8.1332 Acer truncatum HOM05D004363 ORTHO05D005110 3.0e-282 975.3 847 59.4
COL.COLO4_29546 Corchorus olitorius HOM05D004363 ORTHO05D005110 8.9e-282 973.8 847 58.6
MD14G1040700 Malus domestica HOM05D004363 ORTHO05D005110 2.6e-281 972.2 860 59.0
Duzib093G0100 Durio zibethinus HOM05D004363 ORTHO05D005110 1.7e-280 969.5 848 60.1
CiPaw.10G018600 Carya illinoinensis HOM05D004363 ORTHO05D005110 4.9e-280 968.0 846 59.5
TAR169G0003 Trochodendron aralioides HOM05D004363 ORTHO05D005110 4.9e-280 968.0 857 59.5
QL07p036386 Quercus lobata HOM05D004363 ORTHO05D005110 1.1e-279 966.8 847 60.2
Dinv12347 Davidia involucrata HOM05D004363 ORTHO05D005110 1.4e-279 966.5 852 58.6
GSVIVG01022591001 Vitis vinifera HOM05D004363 ORTHO05D005110 5.4e-279 964.5 845 60.0
RcHm_v2.0_Chr3g0476301 Rosa chinensis HOM05D004363 ORTHO05D005110 7.0e-279 964.1 851 59.0
Cfa020046 Carpinus fangiana HOM05D004363 ORTHO05D005110 3.5e-278 961.8 847 59.3
vmacro07483 Vaccinium macrocarpon HOM05D004363 ORTHO05D005110 5.9e-278 961.1 846 59.1
Oeu035643.1 Olea europaea HOM05D004363 ORTHO05D005110 7.8e-278 960.7 846 59.6
FAN02G1528 Fragaria x ananassa HOM05D004363 ORTHO05D005110 1.3e-277 959.9 852 58.7
Gohir.D04G092000 Gossypium hirsutum HOM05D004363 ORTHO05D005110 3.9e-277 958.4 848 58.5
CANSAT64G2344 Cannabis sativa HOM05D004363 ORTHO05D005110 8.6e-277 957.2 853 58.0
Manes.08G034300 Manihot esculenta HOM05D004363 ORTHO05D005110 4.3e-276 954.9 862 58.8
TAR628G0010 Trochodendron aralioides HOM05D004363 ORTHO05D005110 4.3e-276 954.9 858 58.6
FAN05G3395 Fragaria x ananassa HOM05D004363 ORTHO05D005110 9.5e-276 953.7 851 58.8
FvH4_6g20450 Fragaria vesca HOM05D004363 ORTHO05D005110 3.6e-275 951.8 853 59.1
Duzib128G0297 Durio zibethinus HOM05D004363 ORTHO05D005110 6.1e-275 951.0 874 58.1
FAN14G2782 Fragaria x ananassa HOM05D004363 ORTHO05D005110 1.0e-274 950.3 853 59.0
Rhsim11G0045000 Rhododendron simsii HOM05D004363 ORTHO05D005110 1.4e-274 949.9 872 57.8
FAN05G1872 Fragaria x ananassa HOM05D004363 ORTHO05D005110 7.5e-273 944.1 858 58.3
MSTRG.19302 Avicennia marina HOM05D004363 ORTHO05D005110 1.3e-272 943.3 847 58.7
Cc06_g06670 Coffea canephora HOM05D004363 ORTHO05D005110 1.7e-272 943.0 847 57.7
Migut.J00693 Erythranthe guttata HOM05D004363 ORTHO05D005110 1.7e-272 943.0 848 59.0
FAN09G2042 Fragaria x ananassa HOM05D004363 ORTHO05D005110 4.9e-272 941.4 888 55.5
Sabra16G0069700 Salix brachista HOM05D004363 ORTHO05D005110 2.7e-270 935.6 849 59.2
Potri.016G068800 Populus trichocarpa HOM05D004363 ORTHO05D005110 4.6e-270 934.9 849 58.9
Ca_09062_v3 Cicer arietinum L. HOM05D004363 ORTHO05D005110 3.9e-269 931.8 843 56.7
Gohir.A11G315700 Gossypium hirsutum HOM05D004363 ORTHO05D005110 3.3e-268 928.7 848 58.4
arahy.Tifrunner.gnm1.ann1.D60SL5 Arachis hypogaea HOM05D004363 ORTHO05D005110 3.6e-267 925.2 859 55.3
arahy.Tifrunner.gnm1.ann1.KT4HPP Arachis hypogaea HOM05D004363 ORTHO05D005110 4.7e-267 924.9 844 56.3
Medtr7g106380 Medicago truncatula HOM05D004363 ORTHO05D005110 1.4e-266 923.3 848 56.2
Sopen01g002950 Solanum pennellii HOM05D004363 ORTHO05D005110 2.3e-266 922.5 845 57.6
TPR.G31289 Trifolium pratense HOM05D004363 ORTHO05D005110 3.1e-266 922.2 843 56.2
Gorai.007G363900 Gossypium raimondii HOM05D004363 ORTHO05D005110 6.8e-266 921.0 848 58.1
Psat0s3922g0040 Pisum sativum HOM05D004363 ORTHO05D005110 1.2e-265 920.2 843 56.6
Gohir.D11G332900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 1.5e-265 919.8 848 58.1
Peaxi162Scf00582g00064 Petunia axillaris HOM05D004363 ORTHO05D005110 2.6e-265 919.1 846 57.3
MSTRG.5891 Avicennia marina HOM05D004363 ORTHO05D005110 2.9e-264 915.6 848 56.6
Lj1g0000064 Lotus japonicus HOM05D004363 ORTHO05D005110 6.4e-264 914.4 849 56.1
Glyma.03G202700 Glycine max HOM05D004363 ORTHO05D005110 1.4e-263 913.3 842 55.8
Solyc01g006960.3 Solanum lycopersicum HOM05D004363 ORTHO05D005110 1.4e-263 913.3 845 56.9
DCAR_020694 Daucus carota HOM05D004363 ORTHO05D005110 9.2e-263 910.6 845 56.9
TWI77G0878 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 3.5e-262 908.7 845 56.0
Glyma.19G200400 Glycine max HOM05D004363 ORTHO05D005110 3.0e-261 905.6 848 55.3
Lalb_Chr01g0017831 Lupinus albus HOM05D004363 ORTHO05D005110 8.6e-261 904.0 847 55.4
Nn6g34649 Nelumbo nucifera HOM05D004363 ORTHO05D005110 8.6e-261 904.0 861 56.7
TWI74G0412 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 8.6e-261 904.0 844 55.9
VMungo1383G2497 Vigna mungo HOM05D004363 ORTHO05D005110 1.5e-260 903.3 842 54.9
Phvul.001G196200 Phaseolus vulgaris HOM05D004363 ORTHO05D005110 1.9e-260 902.9 842 55.5
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 2.5e-260 902.5 841 55.9
CAN.G911.40 Capsicum annuum HOM05D004363 ORTHO05D005110 7.3e-260 901.0 846 55.0
PGR004G0690 Punica granatum HOM05D004363 ORTHO05D005110 6.8e-258 894.4 843 56.1
Gorai.009G393900 Gossypium raimondii HOM05D004363 ORTHO05D005110 3.7e-256 888.6 878 54.8
PSO384G4461 Papaver somniferum HOM05D004363 ORTHO05D005110 4.9e-256 888.3 852 56.0
Eucgr.A02575 Eucalyptus grandis HOM05D004363 ORTHO05D005110 1.1e-255 887.1 846 55.6
PSO339G1158 Papaver somniferum HOM05D004363 ORTHO05D005110 1.1e-255 887.1 852 55.6
Sed0002127 Sechium edule HOM05D004363 ORTHO05D005110 1.1e-255 887.1 846 55.8
ECA233G0072 Erigeron canadensis HOM05D004363 ORTHO05D005110 1.4e-255 886.7 845 54.6
CsaV3_3G038050 Cucumis sativus L. HOM05D004363 ORTHO05D005110 3.2e-255 885.6 846 55.8
THA.LOC104820934 Tarenaya hassleriana HOM05D004363 ORTHO05D005110 4.6e-254 881.7 841 54.2
Lsat_1_v5_gn_6_33820 Lactuca sativa HOM05D004363 ORTHO05D005110 3.9e-253 878.6 845 54.3
HanXRQChr02g0053261 Helianthus annuus HOM05D004363 ORTHO05D005110 9.6e-252 874.0 845 53.4
Aqoxy1G00638 Aquilegia oxysepala HOM05D004363 ORTHO05D005110 1.8e-250 869.8 872 54.7
AL6G27170 Arabidopsis lyrata HOM05D004363 ORTHO05D005110 2.0e-249 866.3 840 54.9
BraA10t44344Z Brassica rapa HOM05D004363 ORTHO05D005110 5.8e-249 864.8 837 54.7
BcaNung06113 Brassica carinata HOM05D004363 ORTHO05D005110 9.9e-249 864.0 837 54.7
A10p22780 Brassica napus HOM05D004363 ORTHO05D005110 9.9e-249 864.0 837 54.7
ClCG10G018260 Citrullus lanatus HOM05D004363 ORTHO05D005110 1.7e-248 863.2 910 52.7
BolC3t13384H Brassica oleracea HOM05D004363 ORTHO05D005110 2.9e-248 862.4 846 53.8
A03p07650 Brassica napus HOM05D004363 ORTHO05D005110 4.9e-248 861.7 837 54.1
BolC9t58910H Brassica oleracea HOM05D004363 ORTHO05D005110 4.9e-248 861.7 837 54.6
BraA03t10093Z Brassica rapa HOM05D004363 ORTHO05D005110 4.9e-248 861.7 837 54.1
C03p08890 Brassica napus HOM05D004363 ORTHO05D005110 1.1e-247 860.5 845 53.5
Sp6g27880 Schrenkiella parvula HOM05D004363 ORTHO05D005110 6.0e-246 854.7 845 53.6
Aa31LG11G13340 Aethionema arabicum HOM05D004363 ORTHO05D005110 1.7e-245 853.2 857 52.3
Carub.0006s1447 Capsella rubella HOM05D004363 ORTHO05D005110 6.6e-245 851.3 849 53.7
Thhalv10012466m.g Eutrema salsugineum HOM05D004363 ORTHO05D005110 4.0e-242 842.0 849 53.4
AT5G16280 Arabidopsis thaliana HOM05D004363 ORTHO05D005110 5.3e-242 841.6 840 52.0
BcaB01g04994 Brassica carinata HOM05D004363 ORTHO05D005110 3.4e-233 812.4 851 51.7
MELO3C009547.2 Cucumis melo HOM05D004363 ORTHO05D005110 9.6e-228 794.3 877 51.3
HPP92_013952 Vanilla planifolia HOM05D004363 ORTHO05D005110 6.2e-227 791.6 848 49.6
ATR0772G191 Amborella trichopoda HOM05D004363 ORTHO05D005110 5.3e-226 788.5 878 49.3
Lalb_Chr25g0287961 Lupinus albus HOM05D004363 ORTHO05D005110 1.5e-225 786.9 800 51.8
Zm00001eb060010 Zea mays HOM05D004363 ORTHO05D005110 1.7e-224 783.5 846 49.5
Os03g0786900 Oryza sativa ssp. japonica HOM05D004363 ORTHO05D005110 2.7e-214 749.6 857 47.7
CDE11G0453 Ceratophyllum demersum HOM05D004363 ORTHO05D005110 4.1e-210 735.7 853 48.2
Gohir.A04G054800 Gossypium hirsutum HOM05D004363 ORTHO05D005110 7.9e-206 721.5 648 57.1
SEGI_03324 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.0e-205 721.1 888 45.5
Nitab4.5_0001177g0040 Nicotiana tabacum HOM05D004363 ORTHO05D005110 2.0e-201 706.8 733 52.0
AagrBONN_evm.TU.Sc2ySwM_228.1566 Anthoceros agrestis HOM05D004363 ORTHO05D005110 2.3e-165 587.0 887 39.7
Mapoly0053s0062 Marchantia polymorpha HOM05D004363 ORTHO05D005110 4.9e-163 579.3 872 40.3
Pp3c6_8810 Physcomitrium patens HOM05D004363 ORTHO05D005110 9.2e-162 575.1 883 37.9
CARHR197030 Cardamine hirsuta HOM05D004363 ORTHO05D005110 1.6e-142 511.1 419 61.8
SMO196G0050 Selaginella moellendorffii HOM05D004363 ORTHO05D005110 4.6e-129 466.5 713 40.1
Lj1A1055T62 Lonicera japonica HOM05D004363 ORTHO05D005110 1.9e-119 434.5 337 67.1
Cpa.g.sc104.16 Carica papaya HOM05D004363 ORTHO05D005110 2.4e-114 417.5 323 61.9
TAR623G0254 Trochodendron aralioides HOM05D004363 ORTHO05D005110 1.0e-104 385.6 344 57.8
Nitab4.5_0001191g0010 Nicotiana tabacum HOM05D004363 ORTHO05D005110 3.5e-97 360.5 426 47.4
Haze_20157 Corylus avellana HOM05D004363 ORTHO05D005110 8.8e-88 329.3 255 62.4
Actinidia03984 Actinidia chinensis HOM05D004363 ORTHO05D005110 2.0e-84 318.2 475 40.8
Cre01.g024400 Chlamydomonas reinhardtii HOM05D004363 ORTHO05D005110 4.4e-71 273.9 849 25.4
Actinidia03876 Actinidia chinensis HOM05D004363 ORTHO05D005110 2.1e-65 255.0 298 49.0
CSS0042424 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 2.0e-63 248.4 162 71.6
SEGI_33831 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 7.0e-61 240.0 191 56.0
CSS0011588 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 3.6e-57 227.6 152 69.1
unitig_578.g15812 Utricularia gibba HOM05D004363 ORTHO05D005110 1.4e-56 225.7 341 41.3
Cpa.g.sc104.13 Carica papaya HOM05D004363 ORTHO05D005110 4.1e-53 214.2 233 47.6
PRCOL_00001893 Prasinoderma coloniale HOM05D004363 ORTHO05D005110 1.5e-50 205.7 626 26.4
Nn3g20229 Nelumbo nucifera HOM05D004363 ORTHO05D005110 3.6e-41 174.5 174 50.0
MCO09G191 Micromonas commoda HOM05D004363 ORTHO05D005110 1.8e-40 172.2 703 23.9
Haze_20158 Corylus avellana HOM05D004363 ORTHO05D005110 5.2e-40 170.6 118 80.5
Cpa.g.sc104.18 Carica papaya HOM05D004363 ORTHO05D005110 1.3e-38 166.0 117 78.6
CBR_g74641 Chara braunii HOM05D004363 ORTHO05D005110 4.6e-36 157.5 328 30.2
SHI08961 Sapria himalayana HOM05D004363 ORTHO05D005110 8.6e-35 153.3 382 31.9
SEGI_28545 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 5.2e-32 144.1 110 71.8
SEGI_22432 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 8.3e-30 136.7 207 38.2
SHI08960 Sapria himalayana HOM05D004363 ORTHO05D005110 7.8e-28 130.2 173 41.0
SHI08956 Sapria himalayana HOM05D004363 ORTHO05D005110 1.9e-26 125.6 113 68.1
Actinidia03877 Actinidia chinensis HOM05D004363 ORTHO05D005110 6.4e-22 110.5 88 60.2
arahy.Tifrunner.gnm1.ann1.BA6WS2 Arachis hypogaea HOM05D004363 ORTHO05D005110 2.0e-15 89.0 62 62.9
Lsat_1_v5_gn_8_81001 Lactuca sativa HOM05D004363 ORTHO05D005110 7.1e-13 80.5 78 51.3
Lsat_1_v5_gn_8_3860 Lactuca sativa HOM05D004363 ORTHO05D005110 6.0e-12 77.4 80 55.0
arahy.Tifrunner.gnm1.ann1.P34FZA Arachis hypogaea HOM05D004363 ORTHO05D005110 2.3e-11 75.5 57 59.6
ATR0820G261 Amborella trichopoda HOM05D004363 ORTHO05D005110 4.8e-09 67.8 102 41.2
Lsat_1_v5_gn_3_22681 Lactuca sativa HOM05D004363 ORTHO05D005110 3.1e-08 65.1 45 71.1
Hma1.2p1_0064F.1_g034600 Hydrangea macrophylla HOM05D004363 ORTHO05D005110 1.2e-07 63.2 71 45.1
arahy.Tifrunner.gnm1.ann1.5GE6FN Arachis hypogaea HOM05D000323 ORTHO05D000201 2.0e-07 62.4 41 70.7
CAN.G526.3 Capsicum annuum HOM05D004363 ORTHO05D005110 5.8e-07 60.8 55 76.4
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 1.7e-06 59.3 58 69.0


User provided reference genes

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