Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g203500 Amaranthus hybridus HOM05D005190 ORTHO05D006183 7.6e-97 357.1 168 100.0
EL10Ac3g06230 Beta vulgaris HOM05D005190 ORTHO05D006183 7.2e-47 191.0 93 90.3
AUR62002533 Chenopodium quinoa HOM05D005190 ORTHO05D006183 1.4e-45 186.8 93 90.3
AUR62023660 Chenopodium quinoa HOM05D005190 ORTHO05D006183 3.9e-45 185.3 93 89.2
Dinv09552 Davidia involucrata HOM05D005190 ORTHO05D006183 8.5e-40 167.5 93 78.5
Dinv10386 Davidia involucrata HOM05D005190 ORTHO05D006183 8.5e-40 167.5 93 78.5
TPR.G12566 Trifolium pratense HOM05D005190 ORTHO05D006183 1.6e-38 163.3 93 76.3
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 1.6e-38 163.3 93 76.3
Psat0ss1196g0480 Pisum sativum HOM05D005190 ORTHO05D006183 2.7e-38 162.5 93 75.3
Sc06g0001490 Simmondsia chinensis HOM05D005190 ORTHO05D006183 2.7e-38 162.5 93 77.4
CSS0027522 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 4.7e-38 161.8 93 75.3
CSS0047604 Camellia sinensis var. sinensis HOM05D005190 ORTHO05D006183 4.7e-38 161.8 93 75.3
Manes.17G016100 Manihot esculenta HOM05D005190 ORTHO05D006183 4.7e-38 161.8 93 77.4
arahy.Tifrunner.gnm1.ann1.R3ADAS Arachis hypogaea HOM05D005190 ORTHO05D006183 1.0e-37 160.6 93 74.2
arahy.Tifrunner.gnm1.ann1.W6NXGM Arachis hypogaea HOM05D005190 ORTHO05D006183 1.0e-37 160.6 93 74.2
CsaV3_4G025830 Cucumis sativus L. HOM05D005190 ORTHO05D006183 1.4e-37 160.2 93 75.3
Medtr7g096570 Medicago truncatula HOM05D005190 ORTHO05D006183 1.4e-37 160.2 93 73.1
GSVIVG01017663001 Vitis vinifera HOM05D005190 ORTHO05D006183 1.4e-37 160.2 93 75.3
Sed0026997 Sechium edule HOM05D005190 ORTHO05D006183 1.8e-37 159.8 93 73.1
GSVIVG01017602001 Vitis vinifera HOM05D005190 ORTHO05D006183 1.8e-37 159.8 92 76.1
CANSAT35G0272 Cannabis sativa HOM05D005190 ORTHO05D006183 2.3e-37 159.5 93 75.3
ClCG04G007440 Citrullus lanatus HOM05D005190 ORTHO05D006183 2.3e-37 159.5 93 74.2
Phvul.004G071200 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 2.3e-37 159.5 90 77.8
MELO3C006747.2 Cucumis melo HOM05D005190 ORTHO05D006183 3.0e-37 159.1 93 74.2
CsaV3_3G015480 Cucumis sativus L. HOM05D005190 ORTHO05D006183 3.0e-37 159.1 93 74.2
TAR629G3462 Trochodendron aralioides HOM05D005190 ORTHO05D006183 4.0e-37 158.7 93 74.2
arahy.Tifrunner.gnm1.ann1.JER3JH Arachis hypogaea HOM05D005190 ORTHO05D006183 5.2e-37 158.3 93 72.0
Potri.012G045500 Populus trichocarpa HOM05D005190 ORTHO05D006183 5.2e-37 158.3 93 76.3
Sabra15G0031200 Salix brachista HOM05D005190 ORTHO05D006183 6.7e-37 157.9 93 75.3
Actinidia01056 Actinidia chinensis HOM05D005190 ORTHO05D006183 1.1e-36 157.1 93 73.1
Duzib235G0490 Durio zibethinus HOM05D005190 ORTHO05D006183 1.1e-36 157.1 93 74.2
Hma1.2p1_0013F.1_g007820 Hydrangea macrophylla HOM05D005190 ORTHO05D006183 1.1e-36 157.1 93 74.2
Potri.015G036700 Populus trichocarpa HOM05D005190 ORTHO05D006183 1.5e-36 156.8 93 76.3
Rhsim04G0247000 Rhododendron simsii HOM05D005190 ORTHO05D006183 3.3e-36 155.6 93 73.1
arahy.Tifrunner.gnm1.ann1.CG6LTA Arachis hypogaea HOM05D005190 ORTHO05D006183 4.4e-36 155.2 93 69.9
Ca_02362_v3 Cicer arietinum L. HOM05D005190 ORTHO05D006183 4.4e-36 155.2 93 69.9
Lj4g0016109 Lotus japonicus HOM05D005190 ORTHO05D006183 4.4e-36 155.2 93 72.0
Gohir.A06G195300 Gossypium hirsutum HOM05D005190 ORTHO05D006183 5.7e-36 154.8 93 74.2
Gohir.D06G202900 Gossypium hirsutum HOM05D005190 ORTHO05D006183 7.5e-36 154.5 93 74.2
Gorai.010G236800 Gossypium raimondii HOM05D005190 ORTHO05D006183 7.5e-36 154.5 93 74.2
CiPaw.01G130900 Carya illinoinensis HOM05D005190 ORTHO05D006183 1.3e-35 153.7 91 73.6
TPR.G16114 Trifolium pratense HOM05D005190 ORTHO05D006183 1.3e-35 153.7 92 70.7
MBI19_g06603_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 2.2e-35 152.9 93 71.0
Nn3g18945 Nelumbo nucifera HOM05D005190 ORTHO05D006183 2.2e-35 152.9 93 75.3
Phvul.004G071300 Phaseolus vulgaris HOM05D005190 ORTHO05D006183 2.2e-35 152.9 90 73.3
COL.COLO4_30940 Corchorus olitorius HOM05D005190 ORTHO05D006183 2.8e-35 152.5 92 75.0
Glyma.16G146000 Glycine max HOM05D005190 ORTHO05D006183 2.8e-35 152.5 90 74.4
Ciclev10006189m.g Citrus clementina HOM05D005190 ORTHO05D006183 3.7e-35 152.1 93 69.9
Lalb_Chr13g0298851 Lupinus albus HOM05D005190 ORTHO05D006183 3.7e-35 152.1 93 69.9
MD13G1144000 Malus domestica HOM05D005190 ORTHO05D006183 3.7e-35 152.1 93 72.0
Lalb_Chr07g0181821 Lupinus albus HOM05D005190 ORTHO05D006183 4.8e-35 151.8 93 69.9
SGA_v2.0_scaffold36G14289 Striga asiatica HOM05D005190 ORTHO05D006183 4.8e-35 151.8 93 74.2
ATR0730G183 Amborella trichopoda HOM05D005190 ORTHO05D006183 6.3e-35 151.4 93 72.0
Cfa006455 Carpinus fangiana HOM05D005190 ORTHO05D006183 6.3e-35 151.4 91 71.4
SGA_v2.0_scaffold198G41066 Striga asiatica HOM05D005190 ORTHO05D006183 8.2e-35 151.0 93 72.0
Duzib192G0082 Durio zibethinus HOM05D005190 ORTHO05D006183 1.4e-34 150.2 93 72.0
Glyma.02G064900 Glycine max HOM05D005190 ORTHO05D006183 1.4e-34 150.2 90 73.3
Solyc08g082740.4 Solanum lycopersicum HOM05D005190 ORTHO05D006183 1.4e-34 150.2 93 72.0
Sopen08g030970 Solanum pennellii HOM05D005190 ORTHO05D006183 1.4e-34 150.2 93 72.0
PGSC0003DMG400012133 Solanum tuberosum HOM05D005190 ORTHO05D006183 1.4e-34 150.2 93 72.0
TWI63G0483 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 1.8e-34 149.8 93 72.0
FAN07G0799 Fragaria x ananassa HOM05D005190 ORTHO05D006183 2.4e-34 149.4 93 69.9
FAN17G1108 Fragaria x ananassa HOM05D000385 ORTHO05D006183 2.4e-34 149.4 93 69.9
QL06p013825 Quercus lobata HOM05D005190 ORTHO05D006183 2.4e-34 149.4 93 71.0
Thecc.06G136600 Theobroma cacao HOM05D005190 ORTHO05D006183 2.4e-34 149.4 93 72.0
Cc07_g19070 Coffea canephora HOM05D005190 ORTHO05D006183 3.1e-34 149.1 93 72.0
TWI38G0007 Tripterygium wilfordii HOM05D005190 ORTHO05D006183 3.1e-34 149.1 93 71.0
RcHm_v2.0_Chr4g0426821 Rosa chinensis HOM05D005190 ORTHO05D006183 5.3e-34 148.3 93 68.8
HPP92_019515 Vanilla planifolia HOM05D005190 ORTHO05D006183 5.3e-34 148.3 93 71.0
Oeu009981.1 Olea europaea HOM05D005190 ORTHO05D006183 7.0e-34 147.9 93 72.0
Aa31LG10G5580 Aethionema arabicum HOM05D005190 ORTHO05D006183 9.1e-34 147.5 93 68.8
Prupe.8G102200 Prunus persica HOM05D005190 ORTHO05D006183 9.1e-34 147.5 93 68.8
Cpa.g.sc146.40 Carica papaya HOM05D005190 ORTHO05D006183 1.2e-33 147.1 87 75.9
Haze_00795 Corylus avellana HOM05D005582 ORTHO05D007028 1.2e-33 147.1 91 69.2
FvH4_4g21210 Fragaria vesca HOM05D005190 ORTHO05D006183 1.2e-33 147.1 93 68.8
FAN12G1005 Fragaria x ananassa HOM05D005190 ORTHO05D006183 1.2e-33 147.1 93 68.8
Sabra12G0031600 Salix brachista HOM05D005190 ORTHO05D006183 1.2e-33 147.1 93 72.0
MSTRG.12184 Avicennia marina HOM05D005190 ORTHO05D006183 2.0e-33 146.4 93 71.0
Migut.N00575 Erythranthe guttata HOM05D005190 ORTHO05D006183 2.0e-33 146.4 93 69.9
PGR044G0309 Punica granatum HOM05D005190 ORTHO05D006183 2.0e-33 146.4 93 69.9
CAN.G567.34 Capsicum annuum HOM05D005190 ORTHO05D006183 2.7e-33 146.0 93 71.0
Nitab4.5_0002367g0140 Nicotiana tabacum HOM05D005190 ORTHO05D006183 4.5e-33 145.2 93 68.8
Nitab4.5_0002793g0070 Nicotiana tabacum HOM05D005190 ORTHO05D006183 4.5e-33 145.2 93 67.7
Peaxi162Scf00074g00538 Petunia axillaris HOM05D005190 ORTHO05D006183 4.5e-33 145.2 93 69.9
TAR636G2254 Trochodendron aralioides HOM05D005190 ORTHO05D006183 5.9e-33 144.8 89 71.9
SalBow4G3050 Salvia bowleyana HOM05D005190 ORTHO05D006183 1.0e-32 144.1 93 67.7
THA.LOC104800562 Tarenaya hassleriana HOM05D005190 ORTHO05D006183 1.0e-32 144.1 86 72.1
PSO478G2609 Papaver somniferum HOM05D005190 ORTHO05D006183 1.3e-32 143.7 104 61.5
PSO782G1806 Papaver somniferum HOM05D005190 ORTHO05D006183 1.3e-32 143.7 104 61.5
A08p05180 Brassica napus HOM05D005190 ORTHO05D006183 1.7e-32 143.3 92 69.6
BraA08t32536Z Brassica rapa HOM05D005190 ORTHO05D006183 1.7e-32 143.3 92 69.6
AL1G54730 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 3.8e-32 142.1 93 67.7
AL8G32340 Arabidopsis lyrata HOM05D005190 ORTHO05D006183 5.0e-32 141.7 93 67.7
DCAR_006510 Daucus carota HOM05D005190 ORTHO05D006183 5.0e-32 141.7 93 66.7
BcaC05g27594 Brassica carinata HOM05D005190 ORTHO05D006183 6.5e-32 141.4 93 67.7
A05p21200 Brassica napus HOM05D005190 ORTHO05D006183 6.5e-32 141.4 93 67.7
C05p35790 Brassica napus HOM05D005190 ORTHO05D006183 6.5e-32 141.4 93 67.7
BolC5t32295H Brassica oleracea HOM05D005190 ORTHO05D006183 6.5e-32 141.4 93 67.7
BraA05t21026Z Brassica rapa HOM05D005190 ORTHO05D006183 6.5e-32 141.4 93 67.7
BcaB04g17462 Brassica carinata HOM05D005190 ORTHO05D006183 8.5e-32 141.0 87 71.3
BcaC07g37169 Brassica carinata HOM05D005190 ORTHO05D006183 8.5e-32 141.0 92 68.5
C08p05420 Brassica napus HOM05D005190 ORTHO05D006183 8.5e-32 141.0 92 68.5
BolC8t47359H Brassica oleracea HOM05D005190 ORTHO05D006183 8.5e-32 141.0 92 68.5
AT1G48160 Arabidopsis thaliana HOM05D005190 ORTHO05D006183 1.1e-31 140.6 87 71.3
Thhalv10011800m.g Eutrema salsugineum HOM05D005190 ORTHO05D006183 1.1e-31 140.6 87 71.3
Carub.0001s3725 Capsella rubella HOM05D005190 ORTHO05D006183 1.9e-31 139.8 87 71.3
Lsat_1_v5_gn_6_83381 Lactuca sativa HOM05D005190 ORTHO05D006183 1.9e-31 139.8 93 67.7
SEGI_18361 Sequoiadendron giganteum HOM05D005190 ORTHO05D006183 1.9e-31 139.8 93 67.7
Sp1g35120 Schrenkiella parvula HOM05D005190 ORTHO05D006183 4.2e-31 138.7 87 70.1
ECA246G1588 Erigeron canadensis HOM05D005190 ORTHO05D006183 7.2e-31 137.9 88 71.6
HanXRQChr06g0166421 Helianthus annuus HOM05D005190 ORTHO05D006183 7.2e-31 137.9 93 68.8
Lsat_1_v5_gn_3_12780 Lactuca sativa HOM05D005190 ORTHO05D006183 9.4e-31 137.5 93 69.9
CARHR037790 Cardamine hirsuta HOM05D005190 ORTHO05D006183 1.0e-29 134.0 86 69.8
HanXRQChr17g0534691 Helianthus annuus HOM05D005190 ORTHO05D006183 1.4e-29 133.7 93 65.6
Pp3c3_17800 Physcomitrium patens HOM05D005190 ORTHO05D006183 4.0e-29 132.1 91 63.7
BcaC08g43007 Brassica carinata HOM05D005190 ORTHO05D006183 1.2e-28 130.6 78 75.6
Os06g0342100 Oryza sativa ssp. japonica HOM05D005190 ORTHO05D006183 2.2e-27 126.3 87 63.2
Zm00001eb066670 Zea mays HOM05D005190 ORTHO05D006183 3.7e-27 125.6 86 62.8
Zm00001eb081370 Zea mays HOM05D005190 ORTHO05D006183 3.7e-27 125.6 86 62.8
TPR.G39662 Trifolium pratense HOM05D005190 ORTHO05D006183 1.1e-26 124.0 75 72.0
Mapoly0004s0269 Marchantia polymorpha HOM05D005190 ORTHO05D006183 9.1e-26 120.9 87 63.2
AagrBONN_evm.TU.Sc2ySwM_362.2360 Anthoceros agrestis HOM05D005190 ORTHO05D006183 3.5e-25 119.0 93 55.9
C06p02560 Brassica napus HOM05D005190 ORTHO05D006183 3.5e-25 119.0 104 56.7
Eucgr.G02037 Eucalyptus grandis HOM05D005190 ORTHO05D006183 5.5e-23 111.7 72 68.1
SMO352G0034 Selaginella moellendorffii HOM05D005190 ORTHO05D006183 9.4e-23 110.9 95 56.8
ClCG05G006830 Citrullus lanatus HOM05D005190 ORTHO05D006183 2.3e-21 106.3 56 78.6
MD13G1143900 Malus domestica HOM05D005190 ORTHO05D006183 5.2e-21 105.1 69 66.7
CBR_g39024 Chara braunii HOM05D005190 ORTHO05D006183 6.8e-21 104.8 88 55.7
MBI07_g26367_MAGBIO Magnolia biondii HOM05D005190 ORTHO05D006183 4.9e-19 98.6 62 67.7
unitig_747.g21355 Utricularia gibba HOM05D001490 ORTHO05D001450 2.4e-18 96.3 93 51.6
Haze_12814 Corylus avellana HOM05D000165 ORTHO05D001328 2.7e-17 92.8 65 63.1
BcaC01g01495 Brassica carinata HOM05D005190 ORTHO05D006183 1.3e-16 90.5 70 62.9
BolC6t35384H Brassica oleracea HOM05D005190 ORTHO05D006183 1.7e-16 90.1 49 77.6
arahy.Tifrunner.gnm1.ann1.AFL9DX Arachis hypogaea HOM05D005190 ORTHO05D006183 1.1e-15 87.4 73 57.5
EL10As1g23068 Beta vulgaris HOM05D005190 ORTHO05D006183 3.3e-15 85.9 85 56.5
Cre02.g095070 Chlamydomonas reinhardtii HOM05D005190 ORTHO05D006183 3.6e-14 82.4 91 46.2
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 6.8e-13 78.2 49 67.3
MCO01G268 Micromonas commoda HOM05D005190 ORTHO05D006183 1.2e-12 77.4 74 52.7
RcHm_v2.0_Chr7g0219311 Rosa chinensis HOM05D005190 ORTHO05D006183 3.7e-11 72.4 49 65.3
Cfa023211 Carpinus fangiana HOM05D005190 ORTHO05D006183 1.8e-10 70.1 72 47.2
MD13G1001700 Malus domestica HOM05D005190 ORTHO05D006183 1.8e-10 70.1 81 45.7
CDE05G0439 Ceratophyllum demersum HOM05D005190 ORTHO05D006183 7.8e-09 64.7 53 54.7
PRCOL_00001126 Prasinoderma coloniale HOM05D005190 ORTHO05D006183 7.8e-09 64.7 111 36.0
Dinv29526 Davidia involucrata HOM05D005190 ORTHO05D006183 1.0e-08 64.3 42 69.0
vmacro08000 Vaccinium macrocarpon HOM05D005190 ORTHO05D006183 6.6e-08 61.6 35 74.3


User provided reference genes

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