Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 2.9e-282 974.5 484 100.0
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 4.9e-213 744.6 529 73.5
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 5.4e-204 714.5 516 73.4
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 4.4e-190 668.3 502 68.9
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 4.3e-185 651.7 394 81.5
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 1.3e-181 640.2 397 80.1
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 1.1e-161 573.9 499 62.1
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 3.1e-159 565.8 492 60.8
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 9.0e-159 564.3 492 60.6
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.3e-157 560.5 501 59.9
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 9.3e-156 554.3 495 59.4
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 6.0e-155 551.6 492 59.3
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 3.3e-153 545.8 501 58.3
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 5.6e-153 545.0 484 60.3
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 9.6e-153 544.3 492 59.1
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 1.3e-152 543.9 502 58.6
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 1.6e-152 543.5 488 59.4
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 2.1e-152 543.1 491 58.2
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 3.7e-152 542.3 459 61.2
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 6.2e-152 541.6 459 60.6
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 8.2e-152 541.2 502 58.2
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 1.1e-151 540.8 501 58.3
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 2.4e-151 539.7 504 58.3
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 2.4e-151 539.7 502 58.0
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 4.0e-151 538.9 459 60.1
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 5.3e-151 538.5 475 61.3
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 5.3e-151 538.5 491 58.0
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 6.9e-151 538.1 480 61.2
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 6.9e-151 538.1 459 60.8
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 1.5e-150 537.0 501 58.9
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 2.0e-150 536.6 460 60.4
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 2.6e-150 536.2 501 58.5
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 5.8e-150 535.0 499 57.9
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 5.8e-150 535.0 489 59.3
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 7.6e-150 534.6 400 68.0
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 1.3e-149 533.9 500 57.4
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 2.2e-149 533.1 500 56.8
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 1.1e-148 530.8 499 56.9
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.9e-148 530.0 497 56.9
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 5.5e-148 528.5 491 57.0
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 7.1e-148 528.1 482 59.3
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 9.3e-148 527.7 497 56.7
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.2e-147 527.3 398 65.3
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 1.2e-147 527.3 495 59.0
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 1.6e-147 526.9 501 58.3
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.6e-147 526.9 486 59.1
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 3.5e-147 525.8 507 56.8
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 1.3e-146 523.9 447 59.7
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 3.9e-146 522.3 508 57.1
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 3.9e-146 522.3 502 57.2
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 1.1e-145 520.8 432 61.6
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 1.1e-145 520.8 487 57.7
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 4.3e-145 518.8 483 57.6
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 2.8e-144 516.2 395 66.1
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 1.4e-143 513.8 498 55.4
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 1.4e-143 513.8 569 51.8
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 4.1e-143 512.3 493 56.2
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.2e-142 510.8 502 55.8
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 1.2e-142 510.8 502 55.8
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 1.5e-142 510.4 404 64.9
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 1.5e-142 510.4 459 59.0
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 3.4e-142 509.2 501 56.1
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 5.9e-142 508.4 398 63.6
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 1.0e-141 507.7 428 62.9
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 1.0e-141 507.7 412 61.9
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 1.7e-141 506.9 499 55.9
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 2.9e-141 506.1 409 62.3
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 2.9e-141 506.1 386 67.4
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 5.0e-141 505.4 459 58.4
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 6.5e-141 505.0 415 61.7
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 8.5e-141 504.6 409 62.3
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 1.1e-140 504.2 485 55.7
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 1.1e-140 504.2 496 55.0
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.9e-140 503.4 493 56.0
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 2.5e-140 503.1 496 54.8
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 4.2e-140 502.3 494 55.1
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 2.7e-139 499.6 405 62.5
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 2.7e-139 499.6 493 55.4
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 4.6e-139 498.8 494 54.9
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.8e-138 496.9 511 54.8
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 3.9e-138 495.7 424 59.7
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 5.1e-138 495.4 414 61.4
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 6.7e-138 495.0 414 61.4
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 1.9e-137 493.4 494 54.7
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 4.3e-137 492.3 496 54.6
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 4.3e-137 492.3 455 58.5
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 4.3e-137 492.3 483 55.3
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 9.7e-137 491.1 394 59.9
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 2.2e-136 490.0 469 55.0
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 3.7e-136 489.2 483 55.5
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 2.4e-135 486.5 450 58.7
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 5.3e-135 485.3 500 54.4
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 9.1e-135 484.6 399 61.7
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 1.5e-134 483.8 508 52.4
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 2.0e-134 483.4 496 53.2
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 7.7e-134 481.5 506 50.8
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 1.0e-133 481.1 411 60.8
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 1.3e-133 480.7 410 60.0
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 1.3e-133 480.7 410 60.0
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 1.3e-133 480.7 410 60.0
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 1.7e-133 480.3 411 60.8
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.2e-133 479.9 425 59.8
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 3.8e-133 479.2 399 60.7
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 3.8e-133 479.2 432 58.1
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 6.5e-133 478.4 474 55.5
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 6.5e-133 478.4 469 54.6
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 1.9e-132 476.9 413 59.6
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 1.9e-132 476.9 426 59.6
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 2.5e-132 476.5 415 59.5
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 3.2e-132 476.1 407 59.7
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 4.2e-132 475.7 489 53.0
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 5.5e-132 475.3 426 59.6
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 5.5e-132 475.3 405 59.8
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 9.4e-132 474.6 412 58.5
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 9.4e-132 474.6 412 58.5
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 2.1e-131 473.4 398 60.8
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 2.7e-131 473.0 412 58.3
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.7e-131 473.0 392 62.5
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 3.6e-131 472.6 419 59.7
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 4.7e-131 472.2 400 59.2
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 4.7e-131 472.2 413 58.6
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 4.7e-131 472.2 426 59.4
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 3.9e-130 469.2 400 60.8
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 3.3e-129 466.1 484 53.5
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 3.3e-129 466.1 561 48.8
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 3.3e-129 466.1 488 53.5
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 1.3e-128 464.2 413 58.4
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 1.3e-128 464.2 416 58.4
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 1.7e-128 463.8 407 59.5
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 2.8e-128 463.0 438 56.2
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 2.6e-126 456.4 399 58.4
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 2.6e-126 456.4 594 45.6
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 1.3e-125 454.1 742 40.2
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 1.4e-124 450.7 470 51.9
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 5.5e-124 448.7 507 51.9
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 1.6e-123 447.2 484 50.6
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 3.1e-119 433.0 378 58.5
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 8.5e-117 424.9 407 54.5
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.9e-116 423.7 396 52.0
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 1.6e-115 420.6 317 65.9
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 3.0e-114 416.4 360 61.4
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 1.5e-113 414.1 373 59.2
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 2.7e-110 403.3 381 51.2
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 5.0e-109 399.1 400 50.8
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.5e-108 397.5 301 64.8
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 2.9e-101 373.2 372 52.2
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 2.6e-81 307.0 314 54.5
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.2e-80 303.9 219 67.1
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 9.2e-71 271.9 215 64.2
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 2.1e-67 260.8 202 63.9
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 5.2e-66 256.1 266 54.5
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 5.4e-63 246.1 219 58.0
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 3.6e-59 233.4 227 54.6
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 6.2e-59 232.6 305 42.6
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 2.4e-55 220.7 280 45.7
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.5e-52 211.5 409 37.7
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 1.1e-47 195.3 270 39.3
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 1.6e-46 191.4 449 32.3
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 8.2e-35 152.5 137 54.7
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 3.1e-34 150.6 261 38.7
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.8e-29 134.8 133 54.9
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 8.7e-29 132.5 280 31.8
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 5.0e-24 116.7 119 51.3
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 8.5e-24 115.9 651 22.1
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.5e-23 114.4 142 47.2
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 7.2e-23 112.8 99 63.6
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 7.9e-22 109.4 121 53.7
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 7.2e-15 86.3 97 50.5
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 7.4e-12 76.3 346 24.0
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 3.7e-11 73.9 45 71.1
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.8e-10 71.6 120 40.0
CBR_g50173 Chara braunii HOM05D004013 ORTHO05D004710 2.1e-06 58.2 86 40.7


User provided reference genes

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