Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g202850 Amaranthus hybridus HOM05D006316 ORTHO05D008032 2.5e-133 478.8 241 100.0
EL10Ac3g06220 Beta vulgaris HOM05D006316 ORTHO05D008032 6.8e-123 444.1 241 90.9
Hund12266 Selenicereus undatus HOM05D006316 ORTHO05D008032 3.4e-122 441.8 241 90.9
AUR62002525 Chenopodium quinoa HOM05D006316 ORTHO05D008032 9.8e-122 440.3 241 89.6
VMungo1215G0091 Vigna mungo HOM05D006316 ORTHO05D008032 9.5e-109 397.1 241 79.3
Glyma.13G117200 Glycine max HOM05D006316 ORTHO05D008032 2.1e-108 396.0 241 79.3
Eucgr.B02199 Eucalyptus grandis HOM05D006316 ORTHO05D008032 1.0e-107 393.7 241 78.8
Lj4g0011706 Lotus japonicus HOM05D006316 ORTHO05D008032 1.4e-107 393.3 241 79.3
CSS0049495 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 3.0e-107 392.1 235 80.9
arahy.Tifrunner.gnm1.ann1.NEV66G Arachis hypogaea HOM05D006316 ORTHO05D008032 4.0e-107 391.7 241 77.6
arahy.Tifrunner.gnm1.ann1.ZN6V8N Arachis hypogaea HOM05D006316 ORTHO05D008032 4.0e-107 391.7 241 77.6
Phvul.003G124500 Phaseolus vulgaris HOM05D006316 ORTHO05D008032 6.8e-107 391.0 241 77.6
CSS0037556 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 8.9e-107 390.6 235 80.0
Lalb_Chr12g0200491 Lupinus albus HOM05D006316 ORTHO05D008032 8.9e-107 390.6 247 77.3
Medtr4g124260 Medicago truncatula HOM05D006316 ORTHO05D008032 1.2e-106 390.2 241 77.6
GSVIVG01017710001 Vitis vinifera HOM05D006316 ORTHO05D008032 3.4e-106 388.7 240 77.9
Cc07_g19930 Coffea canephora HOM05D006316 ORTHO05D008032 7.5e-106 387.5 232 80.2
Lj6A704G50 Lonicera japonica HOM05D006316 ORTHO05D008032 9.8e-106 387.1 230 80.9
CsaV3_3G015610 Cucumis sativus L. HOM05D006316 ORTHO05D008032 1.3e-105 386.7 241 75.5
MSTRG.20325 Avicennia marina HOM05D006316 ORTHO05D008032 2.2e-105 386.0 230 80.0
CiPaw.01G127100 Carya illinoinensis HOM05D006316 ORTHO05D008032 4.9e-105 384.8 241 75.9
SalBow7G1663 Salvia bowleyana HOM05D006316 ORTHO05D008032 6.4e-105 384.4 232 79.3
MD13G1137100 Malus domestica HOM05D006316 ORTHO05D008032 8.3e-105 384.0 241 75.1
MELO3C006760.2 Cucumis melo HOM05D006316 ORTHO05D008032 1.1e-104 383.6 241 74.7
Nn4g25293 Nelumbo nucifera HOM05D006316 ORTHO05D008032 1.8e-104 382.9 241 74.7
ClCG05G006940 Citrullus lanatus HOM05D006316 ORTHO05D008032 3.2e-104 382.1 253 73.1
PGR031G3724 Punica granatum HOM05D006316 ORTHO05D008032 5.4e-104 381.3 241 75.9
Sed0018318 Sechium edule HOM05D006316 ORTHO05D008032 3.5e-103 378.6 241 75.1
Migut.B00749 Erythranthe guttata HOM05D006316 ORTHO05D008032 5.9e-103 377.9 230 78.3
Manes.05G122900 Manihot esculenta HOM05D006316 ORTHO05D008032 1.3e-102 376.7 232 76.7
Duzib128G0584 Durio zibethinus HOM05D006316 ORTHO05D008032 2.3e-102 375.9 241 72.6
Actinidia24554 Actinidia chinensis HOM05D006316 ORTHO05D008032 3.9e-102 375.2 228 77.6
Ciclev10005749m.g Citrus clementina HOM05D006316 ORTHO05D008032 3.9e-102 375.2 241 75.9
CAN.G255.2 Capsicum annuum HOM05D006316 ORTHO05D008032 6.6e-102 374.4 230 76.5
Atru.chr4.3188 Acer truncatum HOM05D006316 ORTHO05D008032 1.1e-101 373.6 241 73.9
QL06p014723 Quercus lobata HOM05D006316 ORTHO05D008032 1.1e-101 373.6 240 75.0
Thhalv10021423m.g Eutrema salsugineum HOM05D006316 ORTHO05D008032 1.9e-101 372.9 241 73.9
Peaxi162Scf00571g00412 Petunia axillaris HOM05D006316 ORTHO05D008032 4.3e-101 371.7 230 77.0
TWI74G1230 Tripterygium wilfordii HOM05D006316 ORTHO05D008032 1.6e-100 369.8 235 74.9
ECA246G2315 Erigeron canadensis HOM05D006316 ORTHO05D008032 2.1e-100 369.4 224 76.8
DCAR_002560 Daucus carota HOM05D006316 ORTHO05D008032 2.8e-100 369.0 228 77.2
SGA_v2.0_scaffold131G34373 Striga asiatica HOM05D006316 ORTHO05D008032 4.7e-100 368.2 260 70.8
Nitab4.5_0000051g0260 Nicotiana tabacum HOM05D006316 ORTHO05D008032 8.0e-100 367.5 241 73.9
Lsat_1_v5_gn_6_117760 Lactuca sativa HOM05D006316 ORTHO05D008032 1.4e-99 366.7 224 75.9
Potri.010G004100 Populus trichocarpa HOM05D006316 ORTHO05D008032 1.4e-99 366.7 241 71.4
Haze_00749 Corylus avellana HOM05D006316 ORTHO05D008032 1.8e-99 366.3 220 79.1
Gohir.A05G000600 Gossypium hirsutum HOM05D006316 ORTHO05D008032 1.8e-99 366.3 241 70.1
Sp3g15720 Schrenkiella parvula HOM05D006316 ORTHO05D008032 1.8e-99 366.3 241 71.0
Gohir.D05G000900 Gossypium hirsutum HOM05D006316 ORTHO05D008032 2.3e-99 365.9 241 70.1
Gorai.009G000800 Gossypium raimondii HOM05D006316 ORTHO05D008032 2.3e-99 365.9 241 70.1
BcaB06g25834 Brassica carinata HOM05D006316 ORTHO05D008032 3.1e-99 365.5 241 71.0
Aa31LG8G4460 Aethionema arabicum HOM05D006316 ORTHO05D008032 5.2e-99 364.8 241 72.2
Nitab4.5_0004737g0050 Nicotiana tabacum HOM05D006316 ORTHO05D008032 1.5e-98 363.2 241 73.0
Sopen11g008410 Solanum pennellii HOM05D006316 ORTHO05D008032 1.5e-98 363.2 242 74.0
COL.COLO4_13438 Corchorus olitorius HOM05D006316 ORTHO05D008032 2.0e-98 362.8 236 71.6
Aqoxy2G02444 Aquilegia oxysepala HOM05D006316 ORTHO05D008032 3.4e-98 362.1 241 70.5
C05p48790 Brassica napus HOM05D006316 ORTHO05D008032 3.4e-98 362.1 241 71.0
BolC5t33616H Brassica oleracea HOM05D006316 ORTHO05D008032 3.4e-98 362.1 241 71.0
Carub.0003s1730 Capsella rubella HOM05D006316 ORTHO05D008032 4.4e-98 361.7 241 70.5
CARHR092900 Cardamine hirsuta HOM05D006316 ORTHO05D008032 4.4e-98 361.7 241 70.1
TPR.G12708 Trifolium pratense HOM05D006316 ORTHO05D008032 4.4e-98 361.7 223 75.8
unitig_578.g15959 Utricularia gibba HOM05D006316 ORTHO05D008032 4.4e-98 361.7 247 71.7
A05p32260 Brassica napus HOM05D006316 ORTHO05D008032 5.8e-98 361.3 235 72.8
vmacro04190 Vaccinium macrocarpon HOM05D006316 ORTHO05D008032 5.8e-98 361.3 252 71.0
AT3G17590 Arabidopsis thaliana HOM05D006316 ORTHO05D008032 7.5e-98 360.9 241 70.5
BcaC05g28772 Brassica carinata HOM05D006316 ORTHO05D008032 7.5e-98 360.9 241 71.0
HanXRQChr05g0148931 Helianthus annuus HOM05D006316 ORTHO05D008032 9.8e-98 360.5 229 73.8
BraA05t22055Z Brassica rapa HOM05D006316 ORTHO05D008032 1.7e-97 359.8 235 72.3
AL3G30660 Arabidopsis lyrata HOM05D006316 ORTHO05D008032 2.2e-97 359.4 241 70.1
TAR365G1184 Trochodendron aralioides HOM05D006316 ORTHO05D008032 3.7e-97 358.6 264 68.6
CDE12G0513 Ceratophyllum demersum HOM05D006316 ORTHO05D008032 8.3e-97 357.5 240 69.6
CANSAT56G2492 Cannabis sativa HOM05D006316 ORTHO05D008032 4.1e-96 355.1 243 71.2
PSO761G0163 Papaver somniferum HOM05D006316 ORTHO05D008032 1.6e-95 353.2 229 72.5
PSO210G4075 Papaver somniferum HOM05D006316 ORTHO05D008032 3.5e-95 352.1 229 72.5
Gohir.A09G135800 Gossypium hirsutum HOM05D006316 ORTHO05D008032 4.6e-95 351.7 238 68.1
Psat4g020720 Pisum sativum HOM05D006316 ORTHO05D008032 6.0e-95 351.3 241 71.0
ATR0796G033 Amborella trichopoda HOM05D006316 ORTHO05D008032 1.5e-93 346.7 231 70.6
CSS0010190 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 1.2e-92 343.6 232 74.1
Gohir.D09G137500 Gossypium hirsutum HOM05D006316 ORTHO05D008032 1.8e-91 339.7 261 62.5
RcHm_v2.0_Chr4g0428001 Rosa chinensis HOM05D006316 ORTHO05D008032 3.1e-91 339.0 228 69.7
Sabra10G0003500 Salix brachista HOM05D006316 ORTHO05D008032 3.1e-91 339.0 282 60.6
Sopen11g008420 Solanum pennellii HOM05D006316 ORTHO05D008032 1.2e-90 337.0 230 71.3
AUR62023666 Chenopodium quinoa HOM05D006316 ORTHO05D008032 2.0e-90 336.3 306 60.5
Cfa015754 Carpinus fangiana HOM05D006316 ORTHO05D008032 3.4e-90 335.5 209 76.1
FvH4_4g21770 Fragaria vesca HOM05D006316 ORTHO05D008032 3.4e-90 335.5 228 69.7
FAN17G2953 Fragaria x ananassa HOM05D006316 ORTHO05D008032 9.8e-90 334.0 228 69.3
Thecc.03G258800 Theobroma cacao HOM05D006316 ORTHO05D008032 1.1e-88 330.5 241 66.4
FAN12G0215 Fragaria x ananassa HOM05D006316 ORTHO05D008032 2.3e-86 322.8 250 63.6
THA.LOC104826519 Tarenaya hassleriana HOM05D006316 ORTHO05D008032 3.0e-86 322.4 210 74.8
FAN07G2419 Fragaria x ananassa HOM05D006316 ORTHO05D008032 7.3e-85 317.8 259 61.0
Prupe.1G208100 Prunus persica HOM05D006316 ORTHO05D008032 1.8e-83 313.2 196 75.5
Zm00001eb354530 Zea mays HOM05D006316 ORTHO05D008032 6.4e-81 304.7 228 64.5
Gorai.006G157900 Gossypium raimondii HOM05D006316 ORTHO05D008032 6.0e-79 298.1 232 62.9
Os02g0723700 Oryza sativa ssp. japonica HOM05D006316 ORTHO05D008032 6.0e-79 298.1 226 61.5
Dinv32178 Davidia involucrata HOM05D006316 ORTHO05D008032 1.7e-78 296.6 239 64.0
Solyc11g013400.3 Solanum lycopersicum HOM05D006316 ORTHO05D008032 3.0e-78 295.8 196 73.5
TAR362G1307 Trochodendron aralioides HOM05D006316 ORTHO05D008032 8.6e-78 294.3 192 72.4
Rhsim13G0235700 Rhododendron simsii HOM05D006316 ORTHO05D008032 1.9e-77 293.1 266 58.6
SHI09041 Sapria himalayana HOM05D006316 ORTHO05D008032 6.2e-76 288.1 211 66.4
Sc19g0002500 Simmondsia chinensis HOM05D006316 ORTHO05D008032 1.8e-75 286.6 160 84.4
Mapoly0059s0054 Marchantia polymorpha HOM05D006316 ORTHO05D008032 4.2e-72 275.4 230 57.0
Rhsim04G0168500 Rhododendron simsii HOM05D006316 ORTHO05D008032 5.6e-69 265.0 195 67.7
SMO358G0571 Selaginella moellendorffii HOM05D006316 ORTHO05D008032 5.8e-66 255.0 221 54.3
AagrBONN_evm.TU.Sc2ySwM_228.3212 Anthoceros agrestis HOM05D006316 ORTHO05D008032 7.1e-64 248.1 225 52.0
Lj2g0021665 Lotus japonicus HOM05D006316 ORTHO05D008032 1.0e-62 244.2 192 67.2
LjContig00575g0004232 Lotus japonicus HOM05D006316 ORTHO05D008032 1.6e-60 236.9 172 69.2
LjContig00576g0014419 Lotus japonicus HOM05D006316 ORTHO05D008032 1.6e-60 236.9 172 69.2
HPP92_002633 Vanilla planifolia HOM05D006316 ORTHO05D008032 1.6e-60 236.9 160 69.4
Lj2g0021371 Lotus japonicus HOM05D006316 ORTHO05D008032 3.1e-59 232.6 156 74.4
Rhsim04G0168300 Rhododendron simsii HOM05D006316 ORTHO05D008032 7.6e-58 228.0 195 60.0
CBR_g38190 Chara braunii HOM05D006316 ORTHO05D008032 1.3e-57 227.3 231 48.9
Ca_21361_v3 Cicer arietinum L. HOM05D006316 ORTHO05D008032 1.3e-46 190.7 123 72.4
SEGI_01321 Sequoiadendron giganteum HOM05D006316 ORTHO05D008032 7.2e-40 168.3 128 61.7
Glyma.09G159500 Glycine max HOM05D006316 ORTHO05D008032 8.2e-36 154.8 163 50.3
PGSC0003DMG400027786 Solanum tuberosum HOM05D006316 ORTHO05D008032 3.1e-35 152.9 122 63.1
CSS0015998 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 8.5e-33 144.8 93 76.3
Glyma.17G042702 Glycine max HOM05D006316 ORTHO05D008032 2.8e-28 129.8 78 79.5
MBI18_g03841_MAGBIO Magnolia biondii HOM05D006046 ORTHO05D007580 5.0e-25 119.0 71 78.9
Solyc11g013410.2 Solanum lycopersicum HOM05D006316 ORTHO05D008032 1.1e-24 117.9 78 71.8
Cpa.g.sc146.8 Carica papaya HOM05D006316 ORTHO05D008032 2.5e-24 116.7 61 90.2
Cpa.g.c44700 Carica papaya HOM05D006316 ORTHO05D008032 9.7e-21 104.8 55 83.6
DCAR_030416 Daucus carota HOM05D006316 ORTHO05D008032 1.6e-18 97.4 122 51.6
Oeu020629.4 Olea europaea HOM05D002546 ORTHO05D002671 8.0e-15 85.1 69 65.2
Cfa025220 Carpinus fangiana HOM05D006316 ORTHO05D008032 2.6e-13 80.1 152 30.3
Cre14.g619613 Chlamydomonas reinhardtii HOM05D006316 ORTHO05D008032 2.7e-10 70.1 168 26.2
RcHm_v2.0_Chr5g0025761 Rosa chinensis HOM05D006316 ORTHO05D008032 6.5e-09 65.5 65 50.8


User provided reference genes

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