Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.07g202370 Amaranthus hybridus HOM05D006271 ORTHO05D000898 2.9e-163 578.6 304 100.0
Ah.05g175000 Amaranthus hybridus HOM05D002461 ORTHO05D000898 2.5e-37 160.2 108 78.7
Ah.02g117950 Amaranthus hybridus HOM05D002461 ORTHO05D000898 7.2e-37 158.7 99 85.9
Ah.02g117860 Amaranthus hybridus HOM05D002461 ORTHO05D000898 2.7e-36 156.8 99 83.8
Ah.07g198020 Amaranthus hybridus HOM05D002461 ORTHO05D000898 3.0e-35 153.3 99 82.8
Ah.13g067560 Amaranthus hybridus HOM05D002461 ORTHO05D000898 5.1e-35 152.5 99 80.8
Ah.14g088400 Amaranthus hybridus HOM05D002461 ORTHO05D000898 5.1e-35 152.5 99 80.8
Ah.14g079300 Amaranthus hybridus HOM05D002461 ORTHO05D000898 2.5e-34 150.2 94 83.0
Ah.14g080250 Amaranthus hybridus HOM05D002461 ORTHO05D000898 2.5e-34 150.2 99 79.8
Ah.10g030780 Amaranthus hybridus HOM05D002461 ORTHO05D000898 4.3e-34 149.4 99 80.8
Ah.02g119150 Amaranthus hybridus HOM05D002461 ORTHO05D000898 9.7e-34 148.3 99 80.8
Ah.05g176570 Amaranthus hybridus HOM05D002461 ORTHO05D000898 3.7e-33 146.4 99 78.8
Ah.13g073740 Amaranthus hybridus HOM05D002461 ORTHO05D000898 2.4e-32 143.7 99 76.8
Ah.11g044780 Amaranthus hybridus HOM05D002461 ORTHO05D000898 5.3e-32 142.5 99 76.8
AUR62036230 Chenopodium quinoa HOM05D006271 ORTHO05D008237 2.6e-31 140.2 102 77.5
AUR62009716 Chenopodium quinoa HOM05D006271 ORTHO05D008237 5.9e-31 139.0 102 77.5
EL10Ac7g15870 Beta vulgaris HOM05D006271 ORTHO05D008237 8.5e-30 135.2 97 76.3
Ah.10g033340 Amaranthus hybridus HOM05D002461 ORTHO05D000898 7.9e-28 128.6 68 94.1
Sc21g0004890 Simmondsia chinensis HOM05D006271 ORTHO05D008237 9.7e-26 121.7 90 74.4
CiPaw.13G067000 Carya illinoinensis HOM05D006271 ORTHO05D008237 2.4e-24 117.1 90 67.8
Ciclev10001595m.g Citrus clementina HOM05D006271 ORTHO05D008237 3.4e-23 113.2 94 64.9
Dinv12252 Davidia involucrata HOM05D006271 ORTHO05D008237 3.4e-23 113.2 85 71.8
Hma1.2p1_0613F.1_g189190 Hydrangea macrophylla HOM05D006271 ORTHO05D008237 3.4e-23 113.2 85 68.2
Manes.12G056300 Manihot esculenta HOM05D006271 ORTHO05D008237 4.5e-23 112.8 80 73.8
Ah.11g042210 Amaranthus hybridus HOM05D002461 ORTHO05D000898 1.0e-22 111.7 96 63.5
Ah.16g107710 Amaranthus hybridus HOM05D002461 ORTHO05D000898 1.0e-22 111.7 96 63.5
Duzib168G1576 Durio zibethinus HOM05D006271 ORTHO05D008237 1.0e-22 111.7 89 62.9
QL01p025615 Quercus lobata HOM05D006271 ORTHO05D008237 1.3e-22 111.3 90 65.6
TAR633G1937 Trochodendron aralioides HOM05D006271 ORTHO05D008237 1.3e-22 111.3 89 66.3
TAR369G0029 Trochodendron aralioides HOM05D006271 ORTHO05D008237 2.2e-22 110.5 87 66.7
Haze_24435 Corylus avellana HOM05D006271 ORTHO05D008237 2.9e-22 110.2 83 71.1
Oeu032478.1 Olea europaea HOM05D006271 ORTHO05D008237 2.9e-22 110.2 81 72.8
Ah.02g117970 Amaranthus hybridus HOM05D002461 ORTHO05D000898 3.8e-22 109.8 72 75.0
Atru.chr5.2170 Acer truncatum HOM05D006271 ORTHO05D008237 5.0e-22 109.4 89 65.2
Ah.05g174440 Amaranthus hybridus HOM05D002461 ORTHO05D000898 5.0e-22 109.4 96 62.5
Ah.16g110300 Amaranthus hybridus HOM05D002461 ORTHO05D000898 5.0e-22 109.4 96 62.5
Ah.05g172940 Amaranthus hybridus HOM05D002461 ORTHO05D000898 6.5e-22 109.0 96 62.5
Ah.07g196560 Amaranthus hybridus HOM05D002461 ORTHO05D000898 8.5e-22 108.6 95 62.1
Ah.14g080610 Amaranthus hybridus HOM05D002461 ORTHO05D000898 8.5e-22 108.6 95 62.1
GSVIVG01024608001 Vitis vinifera HOM05D006271 ORTHO05D008237 8.5e-22 108.6 75 76.0
CANSAT11G2184 Cannabis sativa HOM05D006271 ORTHO05D008237 1.4e-21 107.8 91 61.5
Rhsim13G0062500 Rhododendron simsii HOM05D006271 ORTHO05D008237 1.4e-21 107.8 86 68.6
Cfa011797 Carpinus fangiana HOM05D006271 ORTHO05D008237 1.9e-21 107.5 76 72.4
Eucgr.K01366 Eucalyptus grandis HOM05D006271 ORTHO05D008237 1.9e-21 107.5 83 67.5
PSO384G0354 Papaver somniferum HOM05D006271 ORTHO05D008237 1.9e-21 107.5 74 74.3
Thecc.09G360000 Theobroma cacao HOM05D006271 ORTHO05D008237 1.9e-21 107.5 89 62.9
Cpa.g.c32708 Carica papaya HOM05D006271 ORTHO05D008237 2.5e-21 107.1 89 66.3
CsaV3_7G022840 Cucumis sativus L. HOM05D006271 ORTHO05D008237 2.5e-21 107.1 90 61.1
Hund18965 Selenicereus undatus HOM05D006271 ORTHO05D008237 2.5e-21 107.1 83 67.5
DCAR_018792 Daucus carota HOM05D006271 ORTHO05D008237 3.2e-21 106.7 86 64.0
FvH4_5g27270 Fragaria vesca HOM05D006271 ORTHO05D008237 3.2e-21 106.7 79 69.6
FAN13G0829 Fragaria x ananassa HOM05D006271 ORTHO05D008237 3.2e-21 106.7 79 69.6
FAN18G4385 Fragaria x ananassa HOM05D006271 ORTHO05D008237 3.2e-21 106.7 79 69.6
PSO170G5827 Papaver somniferum HOM05D006271 ORTHO05D008237 3.2e-21 106.7 95 65.3
Ah.14g080440 Amaranthus hybridus HOM05D002461 ORTHO05D000898 4.2e-21 106.3 95 61.1
Cc01_g15040 Coffea canephora HOM05D006271 ORTHO05D008237 5.5e-21 105.9 86 64.0
Lsat_1_v5_gn_9_14460 Lactuca sativa HOM05D006271 ORTHO05D008237 5.5e-21 105.9 98 60.2
MBI15_g26246_MAGBIO Magnolia biondii HOM05D006271 ORTHO05D008237 5.5e-21 105.9 85 64.7
Ah.02g123850 Amaranthus hybridus HOM05D002461 ORTHO05D000898 7.2e-21 105.5 103 56.3
Gohir.D03G144000 Gossypium hirsutum HOM05D006271 ORTHO05D008237 7.2e-21 105.5 89 60.7
Gorai.003G151300 Gossypium raimondii HOM05D006271 ORTHO05D008237 7.2e-21 105.5 89 60.7
Nitab4.5_0002768g0040 Nicotiana tabacum HOM05D006271 ORTHO05D008237 7.2e-21 105.5 85 67.1
ClCG08G003170 Citrullus lanatus HOM05D006271 ORTHO05D008237 1.2e-20 104.8 90 60.0
Prupe.6G045300 Prunus persica HOM05D006271 ORTHO05D008237 1.2e-20 104.8 91 63.7
MD11G1060500 Malus domestica HOM05D006271 ORTHO05D008237 2.1e-20 104.0 90 64.4
Gohir.A03G024500 Gossypium hirsutum HOM05D006271 ORTHO05D008237 2.7e-20 103.6 89 60.7
HanXRQChr08g0228551 Helianthus annuus HOM05D006271 ORTHO05D008237 3.6e-20 103.2 79 67.1
MD03G1058300 Malus domestica HOM05D006271 ORTHO05D008237 3.6e-20 103.2 101 59.4
Nitab4.5_0003270g0040 Nicotiana tabacum HOM05D006271 ORTHO05D008237 3.6e-20 103.2 85 65.9
PGR004G1333 Punica granatum HOM05D006271 ORTHO05D008237 4.7e-20 102.8 85 65.9
Sopen06g033780 Solanum pennellii HOM05D006271 ORTHO05D008237 4.7e-20 102.8 91 64.8
A05p15180 Brassica napus HOM05D006271 ORTHO05D008237 6.1e-20 102.4 80 61.2
Psat6g224880 Pisum sativum HOM05D006271 ORTHO05D008237 7.9e-20 102.1 76 65.8
BcaB02g10312 Brassica carinata HOM05D006271 ORTHO05D008237 1.0e-19 101.7 92 58.7
Sed0013584 Sechium edule HOM05D006271 ORTHO05D008237 1.0e-19 101.7 92 57.6
Aqoxy4G02154 Aquilegia oxysepala HOM05D006271 ORTHO05D008237 1.8e-19 100.9 88 63.6
CAN.G1095.29 Capsicum annuum HOM05D006271 ORTHO05D008237 1.8e-19 100.9 83 67.5
PGSC0003DMG400030380 Solanum tuberosum HOM05D006271 ORTHO05D008237 1.8e-19 100.9 92 63.0
CSS0050408 Camellia sinensis var. sinensis HOM05D006271 ORTHO05D008237 2.3e-19 100.5 73 74.0
SalBow2G1290 Salvia bowleyana HOM05D006271 ORTHO05D008237 2.3e-19 100.5 87 63.2
Ca_26670_v3 Cicer arietinum L. HOM05D006271 ORTHO05D008237 3.0e-19 100.1 74 67.6
Thhalv10016851m.g Eutrema salsugineum HOM05D006271 ORTHO05D008237 3.0e-19 100.1 89 59.6
CSS0007493 Camellia sinensis var. sinensis HOM05D006271 ORTHO05D008237 3.9e-19 99.8 85 67.1
COL.COLO4_11178 Corchorus olitorius HOM05D006271 ORTHO05D008237 5.1e-19 99.4 89 58.4
Actinidia23186 Actinidia chinensis HOM05D006271 ORTHO05D008237 8.8e-19 98.6 86 65.1
BcaC02g11116 Brassica carinata HOM05D006271 ORTHO05D008237 8.8e-19 98.6 85 56.5
SGA_v2.0_scaffold77G25374 Striga asiatica HOM05D006271 ORTHO05D008237 8.8e-19 98.6 87 62.1
Carub.0008s0813 Capsella rubella HOM05D006271 ORTHO05D008237 1.1e-18 98.2 94 57.4
PSO017G5241 Papaver somniferum HOM05D006271 ORTHO05D008237 1.1e-18 98.2 85 61.2
Aa31LG5G6440 Aethionema arabicum HOM05D006271 ORTHO05D008237 1.5e-18 97.8 85 62.4
Ah.06g186220 Amaranthus hybridus HOM05D002461 ORTHO05D000898 1.5e-18 97.8 83 62.7
Glyma.19G024000 Glycine max HOM05D006271 ORTHO05D008237 2.6e-18 97.1 86 59.3
Ah.01g012310 Amaranthus hybridus HOM05D002461 ORTHO05D000898 3.3e-18 96.7 98 60.2
Medtr7g033700 Medicago truncatula HOM05D006271 ORTHO05D008237 3.3e-18 96.7 79 63.3
Ah.01g013140 Amaranthus hybridus HOM05D002461 ORTHO05D000898 4.4e-18 96.3 98 56.1
BraA05t20437Z Brassica rapa HOM05D006271 ORTHO05D008237 5.7e-18 95.9 104 52.9
PSO339G2991 Papaver somniferum HOM05D006271 ORTHO05D008237 5.7e-18 95.9 85 62.4
THA.LOC104800763 Tarenaya hassleriana HOM05D006271 ORTHO05D008237 5.7e-18 95.9 89 61.8
arahy.Tifrunner.gnm1.ann1.0DE1FL Arachis hypogaea HOM05D006271 ORTHO05D008237 7.4e-18 95.5 76 60.5
arahy.Tifrunner.gnm1.ann1.4PY88X Arachis hypogaea HOM05D006271 ORTHO05D008237 7.4e-18 95.5 76 60.5
ECA247G1693 Erigeron canadensis HOM05D006271 ORTHO05D008237 7.4e-18 95.5 84 60.7
Sp4g12860 Schrenkiella parvula HOM05D006271 ORTHO05D008237 7.4e-18 95.5 83 56.6
Medtr8g063090 Medicago truncatula HOM05D006271 ORTHO05D008237 9.7e-18 95.1 79 62.0
TPR.G1139 Trifolium pratense HOM05D006271 ORTHO05D008237 9.7e-18 95.1 85 57.6
CARHR123600 Cardamine hirsuta HOM05D006271 ORTHO05D008237 1.7e-17 94.4 93 55.9
Lj1g0015465 Lotus japonicus HOM05D006271 ORTHO05D008237 1.7e-17 94.4 85 57.6
RcHm_v2.0_Chr6g0268191 Rosa chinensis HOM05D006271 ORTHO05D008237 2.2e-17 94.0 93 57.0
Phvul.008G153700 Phaseolus vulgaris HOM05D006271 ORTHO05D008237 2.8e-17 93.6 76 60.5
BolC4t23562H Brassica oleracea HOM05D006271 ORTHO05D008237 3.7e-17 93.2 87 55.2
Potri.019G126500 Populus trichocarpa HOM05D006271 ORTHO05D008237 3.7e-17 93.2 92 55.4
Ah.01g012530 Amaranthus hybridus HOM05D002461 ORTHO05D000898 4.8e-17 92.8 96 55.2
unitig_60.g25562 Utricularia gibba HOM05D006271 ORTHO05D008237 8.2e-17 92.0 76 59.2
Lalb_Chr22g0360771 Lupinus albus HOM05D006271 ORTHO05D008237 1.4e-16 91.3 92 55.4
THA.LOC104800777 Tarenaya hassleriana HOM05D006271 ORTHO05D008237 1.4e-16 91.3 73 63.0
Sabra19G0124300 Salix brachista HOM05D006271 ORTHO05D008237 1.8e-16 90.9 93 52.7
VMungo0464G0054 Vigna mungo HOM05D006271 ORTHO05D008237 1.8e-16 90.9 85 55.3
AT2G30280 Arabidopsis thaliana HOM05D006271 ORTHO05D008237 2.4e-16 90.5 94 55.3
Sabra19G0130300 Salix brachista HOM05D006271 ORTHO05D008237 2.4e-16 90.5 79 58.2
Medtr7g033685 Medicago truncatula HOM05D006271 ORTHO05D008237 5.3e-16 89.4 76 59.2
ATR0681G348 Amborella trichopoda HOM05D006727 ORTHO05D008408 7.0e-16 89.0 94 52.1
TWI79G1094 Tripterygium wilfordii HOM05D006271 ORTHO05D008237 1.6e-15 87.8 94 54.3
Migut.N00750 Erythranthe guttata HOM05D006271 ORTHO05D008237 3.5e-15 86.7 81 56.8
AL4G25130 Arabidopsis lyrata HOM05D006271 ORTHO05D008237 7.7e-15 85.5 93 52.7
unitig_60.g25741 Utricularia gibba HOM05D006271 ORTHO05D008237 7.7e-15 85.5 78 56.4
FAN04G1993 Fragaria x ananassa HOM05D006271 ORTHO05D008237 1.0e-14 85.1 108 50.0
Ah.11g040890 Amaranthus hybridus HOM05D002461 ORTHO05D000898 1.3e-14 84.7 140 41.4
Ah.14g078970 Amaranthus hybridus HOM05D002461 ORTHO05D000898 2.2e-14 84.0 53 83.0
FAN08G2456 Fragaria x ananassa HOM05D006271 ORTHO05D008237 2.9e-14 83.6 108 50.0
Ah.06g183740 Amaranthus hybridus HOM05D002461 ORTHO05D000898 1.1e-13 81.6 95 50.5
Os11g0110066 Oryza sativa ssp. japonica HOM05D006271 ORTHO05D008237 1.1e-13 81.6 82 52.4
Ah.09g227120 Amaranthus hybridus HOM05D002461 ORTHO05D000898 3.2e-13 80.1 52 73.1
Os12g0110300 Oryza sativa ssp. japonica HOM05D006271 ORTHO05D008237 4.2e-13 79.7 81 51.9
Ah.05g173030 Amaranthus hybridus HOM05D002461 ORTHO05D000898 1.2e-12 78.2 52 73.1
HPP92_015428 Vanilla planifolia HOM05D006271 ORTHO05D008237 3.6e-12 76.6 79 50.6
CSS0039557 Camellia sinensis var. sinensis HOM05D006271 ORTHO05D008237 2.6e-10 70.5 81 55.6
Ah.02g112600 Amaranthus hybridus HOM05D003213 ORTHO05D003693 2.4e-08 63.9 32 90.6
C04p20240 Brassica napus HOM05D006271 ORTHO05D008237 2.4e-08 63.9 54 55.6
Ah.16g101790 Amaranthus hybridus HOM05D014553 ORTHO05D003693 3.1e-08 63.5 32 87.5
Ah.13g076820 Amaranthus hybridus HOM05D002003 ORTHO05D002037 7.0e-08 62.4 41 70.7
Lj1g0018317 Lotus japonicus HOM05D006271 ORTHO05D008237 9.1e-08 62.0 53 60.4
Ah.06g183730 Amaranthus hybridus HOM05D002461 ORTHO05D000898 1.6e-07 61.2 88 43.2
Ah.15g098990 Amaranthus hybridus HOM05D002461 ORTHO05D000898 2.0e-07 60.8 95 44.2
Ah.09g227890 Amaranthus hybridus HOM05D002461 ORTHO05D000898 2.2e-06 57.4 39 92.3
vmacro02904 Vaccinium macrocarpon HOM05D006271 ORTHO05D008237 2.9e-06 57.0 84 45.2
Ah.02g122330 Amaranthus hybridus HOM05D002461 ORTHO05D000898 5.0e-06 56.2 50 48.0
Ah.04g157570 Amaranthus hybridus HOM05D002461 ORTHO05D000898 6.5e-06 55.8 47 51.1
Ah.07g202000 Amaranthus hybridus HOM05D002461 ORTHO05D000898 6.5e-06 55.8 42 83.3
Ah.02g119120 Amaranthus hybridus HOM05D000023 ORTHO05D002258 8.5e-06 55.5 46 50.0


User provided reference genes

Program Settings