Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g196090 Amaranthus hybridus HOM05D005293 ORTHO05D006764 0.0e+00 1075.1 542 100.0
AUR62000381 Chenopodium quinoa HOM05D005293 ORTHO05D006764 2.6e-146 523.1 377 71.9
vmacro01574 Vaccinium macrocarpon HOM05D005293 ORTHO05D006764 1.4e-123 447.6 436 56.0
Gorai.013G130100 Gossypium raimondii HOM05D005293 ORTHO05D006764 2.2e-121 440.3 426 55.2
Gohir.D13G115500 Gossypium hirsutum HOM05D005293 ORTHO05D006764 2.9e-121 439.9 426 55.2
FAN05G3958 Fragaria x ananassa HOM05D005293 ORTHO05D006764 4.9e-121 439.1 429 55.9
Prupe.6G311900 Prunus persica HOM05D005293 ORTHO05D006764 6.4e-121 438.7 426 55.9
Thecc.05G324300 Theobroma cacao HOM05D005293 ORTHO05D006764 6.4e-121 438.7 426 55.6
TAR362G0639 Trochodendron aralioides HOM05D005293 ORTHO05D006764 6.4e-121 438.7 427 54.3
FAN02G4229 Fragaria x ananassa HOM05D005293 ORTHO05D006764 8.3e-121 438.3 426 56.3
Hund21866 Selenicereus undatus HOM05D005293 ORTHO05D006764 1.1e-120 438.0 456 54.4
CSS0034972 Camellia sinensis var. sinensis HOM05D005293 ORTHO05D006764 1.9e-120 437.2 426 55.9
FAN14G3496 Fragaria x ananassa HOM05D005293 ORTHO05D006764 2.4e-120 436.8 426 55.9
EL10Ac4g09472 Beta vulgaris HOM05D005293 ORTHO05D006764 5.4e-120 435.6 326 70.6
RcHm_v2.0_Chr3g0457281 Rosa chinensis HOM05D005293 ORTHO05D006764 3.5e-119 433.0 426 56.1
QL03p014223 Quercus lobata HOM05D005293 ORTHO05D006764 6.0e-119 432.2 427 55.7
FAN09G2780 Fragaria x ananassa HOM05D005293 ORTHO05D006764 7.8e-119 431.8 427 56.0
Cpa.g.sc48.173 Carica papaya HOM05D005293 ORTHO05D006764 2.3e-118 430.3 427 54.6
Duzib106G1789 Durio zibethinus HOM05D005293 ORTHO05D006764 3.0e-118 429.9 426 55.6
Dinv30900 Davidia involucrata HOM05D005293 ORTHO05D006764 1.5e-117 427.6 426 54.5
Cfa006727 Carpinus fangiana HOM05D005293 ORTHO05D006764 2.5e-117 426.8 426 54.0
AUR62006736 Chenopodium quinoa HOM05D005293 ORTHO05D006764 3.3e-117 426.4 326 68.4
HanXRQChr09g0258691 Helianthus annuus HOM05D005293 ORTHO05D006764 3.3e-117 426.4 428 53.5
Atru.chr2.352 Acer truncatum HOM05D005293 ORTHO05D006764 4.3e-117 426.0 427 54.3
CiPaw.07G030400 Carya illinoinensis HOM05D005293 ORTHO05D006764 4.3e-117 426.0 426 53.8
MD12G1204700 Malus domestica HOM05D005293 ORTHO05D006764 4.3e-117 426.0 425 54.8
FvH4_6g07620 Fragaria vesca HOM05D005293 ORTHO05D006764 1.2e-116 424.5 425 55.1
GSVIVG01031253001 Vitis vinifera HOM05D005293 ORTHO05D006764 3.6e-116 422.9 422 54.7
Nn3g21747 Nelumbo nucifera HOM05D005293 ORTHO05D006764 4.7e-116 422.5 427 53.2
Lsat_1_v5_gn_8_116220 Lactuca sativa HOM05D005293 ORTHO05D006764 8.1e-116 421.8 425 53.6
CANSAT54G1875 Cannabis sativa HOM05D005293 ORTHO05D006764 1.4e-115 421.0 425 55.8
Migut.N00939 Erythranthe guttata HOM05D005293 ORTHO05D006764 1.4e-115 421.0 422 54.7
Oeu016565.1 Olea europaea HOM05D005293 ORTHO05D006764 2.3e-115 420.2 422 54.3
Aqoxy7G02580 Aquilegia oxysepala HOM05D005293 ORTHO05D006764 4.0e-115 419.5 426 54.2
Peaxi162Scf01061g00134 Petunia axillaris HOM05D005293 ORTHO05D006764 4.0e-115 419.5 425 55.3
Potri.013G007800 Populus trichocarpa HOM05D005293 ORTHO05D006764 6.8e-115 418.7 429 53.8
Eucgr.H03302 Eucalyptus grandis HOM05D005293 ORTHO05D006764 1.3e-113 414.5 429 53.6
MELO3C015255.2 Cucumis melo HOM05D005293 ORTHO05D006764 2.2e-113 413.7 427 53.9
ECA232G4555 Erigeron canadensis HOM05D005293 ORTHO05D006764 2.2e-113 413.7 428 53.0
Solyc01g100650.3 Solanum lycopersicum HOM05D005293 ORTHO05D006764 3.8e-113 412.9 425 54.1
Sopen01g044170 Solanum pennellii HOM05D005293 ORTHO05D006764 6.4e-113 412.1 425 54.1
MSTRG.27933 Avicennia marina HOM05D005293 ORTHO05D006764 8.4e-113 411.8 432 51.6
Ciclev10000268m.g Citrus clementina HOM05D005293 ORTHO05D006764 1.9e-112 410.6 426 52.3
Nitab4.5_0001338g0090 Nicotiana tabacum HOM05D005293 ORTHO05D006764 3.2e-112 409.8 425 53.9
SGA_v2.0_scaffold37G14600 Striga asiatica HOM05D005293 ORTHO05D006764 4.1e-112 409.5 422 53.3
PSO478G4822 Papaver somniferum HOM05D005293 ORTHO05D006764 5.4e-112 409.1 425 51.5
PGR031G3792 Punica granatum HOM05D005293 ORTHO05D006764 5.4e-112 409.1 425 52.7
ClCG03G017750 Citrullus lanatus HOM05D005293 ORTHO05D006764 9.2e-112 408.3 424 53.5
TWI56G0054 Tripterygium wilfordii HOM05D005293 ORTHO05D006764 9.2e-112 408.3 424 54.0
DCAR_029342 Daucus carota HOM05D005293 ORTHO05D006764 2.7e-111 406.8 428 52.6
CsaV3_1G037900 Cucumis sativus L. HOM05D005293 ORTHO05D006764 4.6e-111 406.0 427 53.2
Phvul.001G224700 Phaseolus vulgaris HOM05D005293 ORTHO05D006764 1.7e-110 404.1 422 51.9
Glyma.19G228100 Glycine max HOM05D005293 ORTHO05D006764 5.1e-110 402.5 418 52.6
PSO782G5414 Papaver somniferum HOM05D005293 ORTHO05D006764 5.1e-110 402.5 425 51.1
THA.LOC104820617 Tarenaya hassleriana HOM05D005293 ORTHO05D006764 5.1e-110 402.5 433 51.5
MBI19_g03259_MAGBIO Magnolia biondii HOM05D005293 ORTHO05D006764 8.6e-110 401.7 435 51.0
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 3.3e-109 399.8 425 50.8
Lj1g0018442 Lotus japonicus HOM05D005293 ORTHO05D006764 7.3e-109 398.7 427 51.3
BcaB07g31127 Brassica carinata HOM05D005293 ORTHO05D006764 1.2e-108 397.9 433 52.4
Psat3g012680 Pisum sativum HOM05D005293 ORTHO05D006764 1.6e-108 397.5 426 50.2
Sed0019289 Sechium edule HOM05D005293 ORTHO05D006764 1.6e-108 397.5 427 52.5
Sabra13G0006700 Salix brachista HOM05D005293 ORTHO05D006764 3.6e-108 396.4 466 49.6
Thhalv10023228m.g Eutrema salsugineum HOM05D005293 ORTHO05D006764 8.1e-108 395.2 421 51.8
Gohir.A13G112600 Gossypium hirsutum HOM05D005293 ORTHO05D006764 8.1e-108 395.2 327 61.8
Actinidia16868 Actinidia chinensis HOM05D005293 ORTHO05D006764 1.4e-107 394.4 324 63.6
Medtr7g112140 Medicago truncatula HOM05D005293 ORTHO05D006764 2.4e-107 393.7 427 50.6
Ca_09301_v3 Cicer arietinum L. HOM05D005293 ORTHO05D006764 5.2e-107 392.5 426 50.5
TPR.G1667 Trifolium pratense HOM05D005293 ORTHO05D006764 1.5e-106 391.0 426 50.2
Sc16g0009090 Simmondsia chinensis HOM05D005293 ORTHO05D006764 2.6e-106 390.2 324 61.7
Carub.0002s0755 Capsella rubella HOM05D005293 ORTHO05D006764 3.4e-106 389.8 417 52.5
BcaC04g22064 Brassica carinata HOM05D005293 ORTHO05D006764 7.6e-106 388.7 433 51.0
Manes.09G177500 Manihot esculenta HOM05D005293 ORTHO05D006764 9.9e-106 388.3 324 62.3
BolC9t55314H Brassica oleracea HOM05D005293 ORTHO05D006764 1.3e-105 387.9 431 51.0
BraA09t37523Z Brassica rapa HOM05D005293 ORTHO05D006764 1.3e-105 387.9 431 51.7
AT1G56500 Arabidopsis thaliana HOM05D005293 ORTHO05D006764 1.7e-105 387.5 417 51.8
COL.COLO4_05541 Corchorus olitorius HOM05D005293 ORTHO05D006764 2.2e-105 387.1 439 49.7
ATR0693G200 Amborella trichopoda HOM05D005293 ORTHO05D006764 2.9e-105 386.7 429 49.2
arahy.Tifrunner.gnm1.ann1.KQC6RY Arachis hypogaea HOM05D005293 ORTHO05D006764 2.9e-105 386.7 426 50.9
Zm00001eb014960 Zea mays HOM05D005293 ORTHO05D006764 2.9e-105 386.7 424 50.0
AL1G66250 Arabidopsis lyrata HOM05D005293 ORTHO05D006764 3.8e-105 386.3 417 52.0
CSS0026167 Camellia sinensis var. sinensis HOM05D005293 ORTHO05D006764 1.1e-104 384.8 321 62.3
Sp2g06270 Schrenkiella parvula HOM05D005293 ORTHO05D006764 1.9e-104 384.0 421 50.8
Haze_04033 Corylus avellana HOM05D005293 ORTHO05D006764 2.7e-103 380.2 535 43.4
Lj5C327G4 Lonicera japonica HOM05D005293 ORTHO05D006764 4.6e-103 379.4 501 45.5
HPP92_013515 Vanilla planifolia HOM05D005293 ORTHO05D006764 1.0e-102 378.3 418 49.5
A09p19050 Brassica napus HOM05D005293 ORTHO05D006764 1.3e-102 377.9 393 53.2
C09p23880 Brassica napus HOM05D005293 ORTHO05D006764 1.1e-101 374.8 393 52.4
Aa31LG2G11430 Aethionema arabicum HOM05D005293 ORTHO05D006764 9.6e-101 371.7 456 49.3
CARHR055040 Cardamine hirsuta HOM05D005293 ORTHO05D006764 5.3e-99 365.9 325 59.4
Lalb_Chr04g0260421 Lupinus albus HOM05D005293 ORTHO05D006764 2.9e-97 360.1 325 57.2
Ah.06g196020 Amaranthus hybridus HOM05D005293 ORTHO05D006764 4.9e-97 359.4 879 34.5
CAN.G1076.25 Capsicum annuum HOM05D005293 ORTHO05D006764 2.1e-92 344.0 405 49.9
SEGI_20624 Sequoiadendron giganteum HOM05D005293 ORTHO05D006764 5.8e-90 335.9 417 46.5
unitig_746.g26883 Utricularia gibba HOM05D005293 ORTHO05D006764 2.2e-89 334.0 418 45.9
Mapoly0010s0206 Marchantia polymorpha HOM05D005293 ORTHO05D006764 1.0e-81 308.5 430 42.1
Pp3c22_14790 Physcomitrium patens HOM05D005293 ORTHO05D006764 1.1e-80 305.1 419 42.2
AagrBONN_evm.TU.Sc2ySwM_228.2939 Anthoceros agrestis HOM05D005293 ORTHO05D006764 3.2e-80 303.5 454 41.0
CBR_g26293 Chara braunii HOM05D005293 ORTHO05D006764 2.0e-74 284.3 440 39.5
SMO358G0750 Selaginella moellendorffii HOM05D005293 ORTHO05D006764 6.5e-73 279.3 414 39.4
Hma1.2p1_0008F-1.1_g005500 Hydrangea macrophylla HOM05D005293 ORTHO05D006764 1.1e-64 251.9 172 71.5
Cc00_g28630 Coffea canephora HOM05D005293 ORTHO05D006764 3.2e-64 250.4 169 71.6
Cre13.g586050 Chlamydomonas reinhardtii HOM05D005293 ORTHO05D006764 1.4e-51 208.4 335 39.1
Nitab4.5_0004525g0070 Nicotiana tabacum HOM05D005293 ORTHO05D006764 2.3e-46 191.0 188 54.3
Rhsim07G0131600 Rhododendron simsii HOM05D005293 ORTHO05D006764 9.7e-45 185.7 196 50.5
Cc02_g34710 Coffea canephora HOM05D005293 ORTHO05D006764 1.5e-40 171.8 185 49.7
Manes.10G151302 Manihot esculenta HOM05D005293 ORTHO05D006764 4.2e-40 170.2 115 73.9
Ca_30515_v3 Cicer arietinum L. HOM05D005293 ORTHO05D006764 5.9e-34 149.8 113 68.1
Hund21867 Selenicereus undatus HOM05D005293 ORTHO05D006764 2.8e-28 131.0 142 57.7
Ca_03080_v3 Cicer arietinum L. HOM05D005293 ORTHO05D006764 8.3e-28 129.4 83 74.7
Nitab4.5_0004525g0040 Nicotiana tabacum HOM05D005293 ORTHO05D006764 2.4e-27 127.9 167 44.9
PGSC0003DMG401002797 Solanum tuberosum HOM05D005293 ORTHO05D006764 1.0e-25 122.5 92 65.2
Ah.06g196030 Amaranthus hybridus HOM05D005293 ORTHO05D006764 8.0e-23 112.8 55 100.0
Rhsim11G0095900 Rhododendron simsii HOM05D005293 ORTHO05D006764 3.0e-22 110.9 104 61.5
Zm00001eb139440 Zea mays HOM05D005293 ORTHO05D006764 2.2e-20 104.8 89 61.8
arahy.Tifrunner.gnm1.ann1.BVXC9K Arachis hypogaea HOM05D005293 ORTHO05D006764 4.9e-20 103.6 146 50.0
Cpa.g.sc48.172 Carica papaya HOM05D005293 ORTHO05D006764 2.0e-18 98.2 137 48.9
Zm00001eb014950 Zea mays HOM05D005293 ORTHO05D006764 3.5e-18 97.4 56 85.7
CARHR049350 Cardamine hirsuta HOM05D005293 ORTHO05D006764 5.9e-18 96.7 78 66.7
Cc02_g35200 Coffea canephora HOM05D005293 ORTHO05D006764 5.9e-18 96.7 139 48.9
CAN.G1076.24 Capsicum annuum HOM05D005293 ORTHO05D006764 2.3e-17 94.7 77 68.8
Manes.03G089519 Manihot esculenta HOM05D003429 ORTHO05D003873 1.9e-16 91.7 52 76.9
Manes.13G093344 Manihot esculenta HOM05D003429 ORTHO05D003873 1.9e-16 91.7 52 76.9
Aqoxy74s001 Aquilegia oxysepala HOM05D005293 ORTHO05D006764 4.3e-16 90.5 62 74.2
Os03g0311300 Oryza sativa ssp. japonica HOM05D005293 ORTHO05D006764 7.3e-16 89.7 56 80.4
RcHm_v2.0_Chr4g0393221 Rosa chinensis HOM05D005293 ORTHO05D006764 9.5e-16 89.4 53 77.4
MBI19_g03258_MAGBIO Magnolia biondii HOM05D005293 ORTHO05D006764 2.3e-14 84.7 83 56.6
Lalb_Chr04g0260411 Lupinus albus HOM05D005293 ORTHO05D006764 3.9e-09 67.4 50 62.0
Pp3c21_18980 Physcomitrium patens HOM05D005293 ORTHO05D006764 1.9e-08 65.1 100 45.0
Ah.06g196040 Amaranthus hybridus HOM05D005293 ORTHO05D006764 3.3e-08 64.3 80 50.0
Pp3s30_450 Physcomitrium patens HOM05D001101 ORTHO05D000893 1.2e-07 62.4 238 29.4
CBR_g26291 Chara braunii HOM05D005293 ORTHO05D006764 5.2e-06 57.0 58 56.9


User provided reference genes

Program Settings