Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 4.0e-93 344.7 175 100.0
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 5.5e-74 281.2 175 82.9
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 4.4e-71 271.6 176 79.0
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 7.4e-71 270.8 177 76.8
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.4e-69 266.5 176 76.7
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 1.5e-66 256.5 178 74.7
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 2.0e-63 246.1 179 69.3
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 2.0e-63 246.1 179 69.3
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 7.4e-63 244.2 170 73.5
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 1.7e-62 243.0 178 68.5
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 2.8e-62 242.3 170 72.9
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 3.7e-62 241.9 127 96.9
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 8.2e-62 240.7 180 69.4
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 1.1e-61 240.4 177 69.5
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 1.1e-61 240.4 179 68.7
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 1.1e-61 240.4 177 70.6
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 1.1e-61 240.4 177 71.2
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 1.4e-61 240.0 170 72.4
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 1.4e-61 240.0 177 69.5
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 1.8e-61 239.6 177 70.1
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 2.4e-61 239.2 177 69.5
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 5.3e-61 238.0 178 67.4
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 5.3e-61 238.0 178 67.4
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 5.3e-61 238.0 178 70.8
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 7.0e-61 237.7 177 70.1
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 7.0e-61 237.7 178 70.8
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 9.1e-61 237.3 176 68.2
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 1.2e-60 236.9 180 66.7
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.2e-60 236.9 173 68.2
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 1.6e-60 236.5 170 71.2
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 1.6e-60 236.5 178 68.0
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 2.0e-60 236.1 177 67.2
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 2.0e-60 236.1 178 68.5
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 2.0e-60 236.1 178 66.9
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 4.5e-60 235.0 177 69.5
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.0e-59 233.8 178 65.7
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 1.3e-59 233.4 177 67.8
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 2.2e-59 232.6 175 66.3
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 3.8e-59 231.9 176 67.6
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 6.5e-59 231.1 179 66.5
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.1e-58 230.3 176 66.5
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.5e-58 229.9 178 64.6
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 2.5e-58 229.2 177 66.7
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 3.2e-58 228.8 181 66.3
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 4.2e-58 228.4 167 69.5
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 4.2e-58 228.4 178 68.0
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 5.5e-58 228.0 180 66.7
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 5.5e-58 228.0 177 68.4
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 1.2e-57 226.9 165 69.7
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 2.1e-57 226.1 177 66.7
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 2.1e-57 226.1 180 66.7
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 2.1e-57 226.1 180 66.7
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 2.7e-57 225.7 178 65.7
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 3.6e-57 225.3 178 66.3
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 8.0e-57 224.2 178 67.4
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 1.0e-56 223.8 180 66.1
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 1.4e-56 223.4 172 64.5
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 1.4e-56 223.4 171 68.4
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.4e-56 223.4 169 66.3
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.3e-56 222.6 171 66.7
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 3.0e-56 222.2 171 66.7
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.0e-56 222.2 171 66.7
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 3.0e-56 222.2 177 64.4
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 5.2e-56 221.5 171 66.1
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 1.5e-55 219.9 175 65.1
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 1.5e-55 219.9 178 64.0
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 1.5e-55 219.9 179 65.9
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 2.0e-55 219.5 171 66.1
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 2.0e-55 219.5 179 65.9
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 3.4e-55 218.8 174 65.5
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 3.4e-55 218.8 174 65.5
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 3.4e-55 218.8 178 64.0
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 3.4e-55 218.8 174 65.5
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 3.4e-55 218.8 174 65.5
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 4.4e-55 218.4 175 65.7
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 7.5e-55 217.6 178 65.2
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 9.8e-55 217.2 178 65.2
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 9.8e-55 217.2 178 65.2
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 9.8e-55 217.2 178 65.2
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 9.8e-55 217.2 178 65.2
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 9.8e-55 217.2 171 67.8
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 1.7e-54 216.5 171 65.5
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.7e-54 216.5 171 67.3
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 2.8e-54 215.7 188 59.6
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 3.7e-54 215.3 178 61.2
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 3.7e-54 215.3 167 65.3
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 3.7e-54 215.3 181 63.0
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 4.8e-54 214.9 174 61.5
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 6.3e-54 214.5 179 64.8
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 1.1e-53 213.8 178 61.8
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 1.4e-53 213.4 171 65.5
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 1.4e-53 213.4 173 64.7
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 1.8e-53 213.0 177 62.7
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 1.8e-53 213.0 181 61.9
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 2.4e-53 212.6 182 62.1
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 3.1e-53 212.2 181 61.9
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 4.1e-53 211.8 173 61.8
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 5.4e-53 211.5 164 65.9
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 7.0e-53 211.1 174 62.6
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 1.2e-52 210.3 177 63.8
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 1.6e-52 209.9 177 65.0
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 2.0e-52 209.5 175 63.4
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 2.0e-52 209.5 151 70.9
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 2.0e-52 209.5 180 61.7
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 4.5e-52 208.4 139 74.1
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 1.0e-51 207.2 173 62.4
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 1.3e-51 206.8 171 63.7
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 1.3e-51 206.8 173 61.8
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 1.3e-51 206.8 173 61.8
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 1.7e-51 206.5 171 62.6
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 3.8e-51 205.3 168 62.5
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 6.5e-51 204.5 182 60.4
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 6.5e-51 204.5 177 62.7
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 6.5e-51 204.5 180 61.7
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.1e-50 203.8 171 60.8
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 1.5e-50 203.4 181 60.2
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 1.9e-50 203.0 151 68.2
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 2.5e-50 202.6 129 75.2
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 2.5e-50 202.6 171 62.6
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 3.2e-50 202.2 182 59.9
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 3.2e-50 202.2 171 60.2
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 1.2e-49 200.3 127 76.4
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 2.1e-49 199.5 179 60.3
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 1.0e-48 197.2 126 74.6
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 1.4e-48 196.8 178 57.3
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 1.7e-46 189.9 158 63.3
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 3.7e-46 188.7 162 61.1
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 8.3e-46 187.6 242 46.3
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 1.1e-45 187.2 194 55.2
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 1.4e-45 186.8 180 58.3
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 1.2e-44 183.7 132 71.2
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 2.9e-43 179.1 179 52.5
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 1.9e-42 176.4 121 70.2
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 3.6e-41 172.2 180 51.7
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 4.0e-40 168.7 171 53.8
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 4.0e-40 168.7 143 55.9
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 5.7e-39 164.9 146 58.9
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 1.1e-37 160.6 182 48.4
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 1.1e-37 160.6 163 50.9
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 1.2e-36 157.1 149 57.0
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.1e-33 146.4 97 75.3
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 5.8e-31 138.3 182 44.5
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 9.8e-31 137.5 86 80.2
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.7e-30 136.7 174 46.6
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 4.9e-30 135.2 104 68.3
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 4.6e-28 128.6 88 75.0
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 2.5e-26 122.9 117 53.8
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 1.1e-24 117.5 112 58.9
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 2.6e-23 112.8 122 50.8
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 2.9e-22 109.4 146 46.6
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 1.0e-19 100.9 118 44.1
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 1.1e-18 97.4 124 45.2
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 3.6e-17 92.4 105 42.9
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 1.4e-16 90.5 139 38.1
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 1.4e-16 90.5 83 54.2
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 3.1e-16 89.4 46 91.3
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 2.0e-15 86.7 108 49.1
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 2.0e-15 86.7 108 49.1
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 9.2e-13 77.8 82 51.2
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 1.2e-09 67.4 89 37.1
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 4.7e-09 65.5 79 48.1
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 7.6e-07 58.2 60 50.0


User provided reference genes

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