Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g192600 Amaranthus hybridus HOM05D002360 ORTHO05D003398 9.0e-87 323.6 163 100.0
EL10Ac4g09180 Beta vulgaris HOM05D006905 ORTHO05D003398 2.0e-22 109.8 91 63.7
Duzib177G0875 Durio zibethinus HOM05D002360 ORTHO05D006297 6.4e-16 88.2 57 78.9
Lalb_Chr21g0310911 Lupinus albus HOM05D002360 ORTHO05D006297 6.4e-16 88.2 58 77.6
SalBow3G4548 Salvia bowleyana HOM05D002360 ORTHO05D006297 6.4e-16 88.2 58 77.6
Actinidia30926 Actinidia chinensis HOM05D002360 ORTHO05D006297 8.3e-16 87.8 57 78.9
CANSAT54G2096 Cannabis sativa HOM05D002360 ORTHO05D006297 8.3e-16 87.8 57 78.9
Potri.005G050700 Populus trichocarpa HOM05D002360 ORTHO05D006297 8.3e-16 87.8 57 78.9
vmacro05071 Vaccinium macrocarpon HOM05D002360 ORTHO05D006297 8.3e-16 87.8 57 78.9
Glyma.10G160500 Glycine max HOM05D002360 ORTHO05D006297 1.1e-15 87.4 57 78.9
MSTRG.5092 Avicennia marina HOM05D002360 ORTHO05D006297 1.9e-15 86.7 58 77.6
Gohir.A11G255100 Gossypium hirsutum HOM05D002360 ORTHO05D006297 1.9e-15 86.7 57 77.2
Gohir.A13G170700 Gossypium hirsutum HOM05D002360 ORTHO05D006297 1.9e-15 86.7 57 77.2
Gorai.013G201600 Gossypium raimondii HOM05D002360 ORTHO05D006297 1.9e-15 86.7 57 77.2
MD04G1220900 Malus domestica HOM05D002360 ORTHO05D006297 1.9e-15 86.7 102 52.9
MD12G1237300 Malus domestica HOM05D002360 ORTHO05D006297 1.9e-15 86.7 102 52.9
Rhsim07G0175400 Rhododendron simsii HOM05D002360 ORTHO05D006297 1.9e-15 86.7 57 77.2
CSS0031670 Camellia sinensis var. sinensis HOM05D002360 ORTHO05D006297 2.4e-15 86.3 57 77.2
CiPaw.07G006100 Carya illinoinensis HOM05D002360 ORTHO05D006297 2.4e-15 86.3 57 77.2
Eucgr.H04384 Eucalyptus grandis HOM05D002360 ORTHO05D006297 2.4e-15 86.3 57 77.2
Eucgr.L02103 Eucalyptus grandis HOM05D002360 ORTHO05D006297 2.4e-15 86.3 57 77.2
Lj9A666T47 Lonicera japonica HOM05D002360 ORTHO05D006297 2.4e-15 86.3 102 52.0
Lj9A669T11 Lonicera japonica HOM05D002360 ORTHO05D006297 2.4e-15 86.3 102 52.0
Prupe.6G340000 Prunus persica HOM05D002360 ORTHO05D006297 2.4e-15 86.3 57 77.2
QL03p024594 Quercus lobata HOM05D002360 ORTHO05D006297 2.4e-15 86.3 57 77.2
QL03p024729 Quercus lobata HOM05D002360 ORTHO05D006297 2.4e-15 86.3 57 77.2
CAN.G134.163 Capsicum annuum HOM05D002360 ORTHO05D006297 3.2e-15 85.9 57 75.4
CAN.G134.165 Capsicum annuum HOM05D002360 ORTHO05D006297 3.2e-15 85.9 57 75.4
Cfa006458 Carpinus fangiana HOM05D002360 ORTHO05D006297 3.2e-15 85.9 57 75.4
Haze_04332 Corylus avellana HOM05D002360 ORTHO05D006297 3.2e-15 85.9 57 75.4
ECA238G1720 Erigeron canadensis HOM05D002360 ORTHO05D006297 3.2e-15 85.9 57 75.4
PGR083G0408 Punica granatum HOM05D002360 ORTHO05D006297 3.2e-15 85.9 57 75.4
SGA_v2.0_scaffold196G40973 Striga asiatica HOM05D002360 ORTHO05D006297 4.1e-15 85.5 58 74.1
Actinidia05764 Actinidia chinensis HOM05D002360 ORTHO05D006297 5.4e-15 85.1 57 75.4
Cpa.g.sc117.67 Carica papaya HOM05D002360 ORTHO05D006297 5.4e-15 85.1 57 75.4
Ca_10056_v3 Cicer arietinum L. HOM05D002360 ORTHO05D006297 5.4e-15 85.1 57 75.4
Ca_30666_v3 Cicer arietinum L. HOM05D002360 ORTHO05D006297 5.4e-15 85.1 57 75.4
Cc02_g31750 Coffea canephora HOM05D002360 ORTHO05D006297 5.4e-15 85.1 57 75.4
Lalb_Chr02g0148681 Lupinus albus HOM05D002360 ORTHO05D006297 5.4e-15 85.1 57 75.4
Manes.08G128100 Manihot esculenta HOM05D002360 ORTHO05D006297 5.4e-15 85.1 57 75.4
Medtr1g081290 Medicago truncatula HOM05D002360 ORTHO05D006297 5.4e-15 85.1 57 75.4
Psat6g147000 Pisum sativum HOM05D002360 ORTHO05D006297 5.4e-15 85.1 57 75.4
SGA_v2.0_scaffold43G16299 Striga asiatica HOM05D002360 ORTHO05D006297 5.4e-15 85.1 57 75.4
TPR.G11141 Trifolium pratense HOM05D002360 ORTHO05D006297 5.4e-15 85.1 57 75.4
VMungo0720G1538 Vigna mungo HOM05D002360 ORTHO05D006297 5.4e-15 85.1 57 77.2
EL10Ac4g09172 Beta vulgaris HOM05D002360 ORTHO05D006297 7.0e-15 84.7 57 75.4
Glyma.20G227900 Glycine max HOM05D002360 ORTHO05D006297 7.0e-15 84.7 57 77.2
HanXRQChr14g0445461 Helianthus annuus HOM05D002360 ORTHO05D006297 7.0e-15 84.7 57 75.4
Lalb_Chr06g0167981 Lupinus albus HOM05D002360 ORTHO05D006297 7.0e-15 84.7 57 75.4
Nitab4.5_0002361g0070 Nicotiana tabacum HOM05D002360 ORTHO05D006297 7.0e-15 84.7 57 73.7
Peaxi162Scf00404g00021 Petunia axillaris HOM05D002360 ORTHO05D006297 7.0e-15 84.7 57 73.7
Sed0001820 Sechium edule HOM05D002360 ORTHO05D006297 7.0e-15 84.7 57 73.7
ClCG06G009140 Citrullus lanatus HOM05D002360 ORTHO05D006297 9.2e-15 84.3 57 73.7
MELO3C024674.2 Cucumis melo HOM05D002360 ORTHO05D006297 9.2e-15 84.3 57 73.7
DCAR_025321 Daucus carota HOM05D002360 ORTHO05D006297 9.2e-15 84.3 57 73.7
Migut.B01073 Erythranthe guttata HOM05D002360 ORTHO05D006297 9.2e-15 84.3 59 72.9
Lsat_1_v5_gn_2_66260 Lactuca sativa HOM05D002360 ORTHO05D006297 9.2e-15 84.3 57 73.7
TWI56G0866 Tripterygium wilfordii HOM05D002360 ORTHO05D006297 9.2e-15 84.3 57 75.4
arahy.Tifrunner.gnm1.ann1.093KP0 Arachis hypogaea HOM05D002360 ORTHO05D006297 1.2e-14 84.0 57 75.4
arahy.Tifrunner.gnm1.ann1.X7Z7AQ Arachis hypogaea HOM05D002360 ORTHO05D006297 1.2e-14 84.0 57 75.4
Oeu021637.1 Olea europaea HOM05D002360 ORTHO05D006297 1.2e-14 84.0 57 75.4
Oeu021639.1 Olea europaea HOM05D002360 ORTHO05D006297 1.2e-14 84.0 57 75.4
AUR62000984 Chenopodium quinoa HOM05D002360 ORTHO05D006297 1.6e-14 83.6 57 73.7
AUR62004975 Chenopodium quinoa HOM05D002360 ORTHO05D006297 1.6e-14 83.6 57 73.7
DCAR_006616 Daucus carota HOM05D002360 ORTHO05D006297 1.6e-14 83.6 57 75.4
Gohir.D13G176200 Gossypium hirsutum HOM05D002360 ORTHO05D006297 1.6e-14 83.6 57 73.7
Potri.013G037700 Populus trichocarpa HOM05D002360 ORTHO05D006297 1.6e-14 83.6 57 73.7
PGSC0003DMG400022473 Solanum tuberosum HOM05D002360 ORTHO05D006297 1.6e-14 83.6 57 73.7
Thecc.05G288400 Theobroma cacao HOM05D002360 ORTHO05D006297 1.6e-14 83.6 57 73.7
Aa31LG5G15260 Aethionema arabicum HOM05D002360 ORTHO05D006297 2.0e-14 83.2 52 80.8
MSTRG.20432 Avicennia marina HOM05D002360 ORTHO05D006297 2.0e-14 83.2 58 72.4
Migut.O00487 Erythranthe guttata HOM05D002360 ORTHO05D006297 2.0e-14 83.2 58 70.7
Hma1.2p1_0195F.1_g084570 Hydrangea macrophylla HOM05D002360 ORTHO05D006297 2.0e-14 83.2 57 73.7
RcHm_v2.0_Chr3g0451921 Rosa chinensis HOM05D002360 ORTHO05D006297 2.0e-14 83.2 102 51.0
GSVIVG01021843001 Vitis vinifera HOM05D002360 ORTHO05D006297 2.0e-14 83.2 57 73.7
Gohir.D11G264800 Gossypium hirsutum HOM05D002360 ORTHO05D006297 2.7e-14 82.8 57 73.7
Gorai.007G284900 Gossypium raimondii HOM05D002360 ORTHO05D006297 2.7e-14 82.8 57 73.7
MBI01_g13082_MAGBIO Magnolia biondii HOM05D002360 ORTHO05D006297 2.7e-14 82.8 57 73.7
Hund22112 Selenicereus undatus HOM05D006905 ORTHO05D003398 2.7e-14 82.8 90 55.6
TAR633G2632 Trochodendron aralioides HOM05D002360 ORTHO05D006297 2.7e-14 82.8 57 73.7
Hund22113 Selenicereus undatus HOM05D002360 ORTHO05D006297 3.5e-14 82.4 57 71.9
Solyc01g097810.3 Solanum lycopersicum HOM05D002360 ORTHO05D006297 3.5e-14 82.4 57 71.9
Sopen01g041410 Solanum pennellii HOM05D002360 ORTHO05D006297 3.5e-14 82.4 57 71.9
AT3G04870 Arabidopsis thaliana HOM05D002360 ORTHO05D006297 4.6e-14 82.0 52 78.8
Carub.0003s0406 Capsella rubella HOM05D002360 ORTHO05D006297 4.6e-14 82.0 52 78.8
CARHR079140 Cardamine hirsuta HOM05D002360 ORTHO05D006297 4.6e-14 82.0 52 78.8
Sc06g0003660 Simmondsia chinensis HOM05D002360 ORTHO05D006297 4.6e-14 82.0 57 71.9
Actinidia36916 Actinidia chinensis HOM05D002360 ORTHO05D006297 6.0e-14 81.6 57 71.9
A05p42730 Brassica napus HOM05D002360 ORTHO05D006297 6.0e-14 81.6 52 78.8
BolC5t34898H Brassica oleracea HOM05D002360 ORTHO05D006297 6.0e-14 81.6 52 78.8
BraA05t22980Z Brassica rapa HOM05D002360 ORTHO05D006297 6.0e-14 81.6 52 78.8
Thhalv10020402m.g Eutrema salsugineum HOM05D002360 ORTHO05D006297 6.0e-14 81.6 52 78.8
Lj5g0023870 Lotus japonicus HOM05D002360 ORTHO05D006297 6.0e-14 81.6 57 73.7
TAR362G0813 Trochodendron aralioides HOM05D002360 ORTHO05D006297 6.0e-14 81.6 57 71.9
Aqoxy2G03380 Aquilegia oxysepala HOM05D002360 ORTHO05D006297 7.8e-14 81.3 57 70.2
Aqoxy3G02075 Aquilegia oxysepala HOM05D002360 ORTHO05D006297 7.8e-14 81.3 57 70.2
FvH4_6g03420 Fragaria vesca HOM05D002360 ORTHO05D006297 7.8e-14 81.3 57 71.9
FAN02G3593 Fragaria x ananassa HOM05D002360 ORTHO05D006297 7.8e-14 81.3 57 71.9
FAN05G4267 Fragaria x ananassa HOM05D002360 ORTHO05D006297 7.8e-14 81.3 57 71.9
FAN05G4730 Fragaria x ananassa HOM05D002360 ORTHO05D006297 7.8e-14 81.3 57 71.9
FAN09G3371 Fragaria x ananassa HOM05D002360 ORTHO05D006297 7.8e-14 81.3 57 71.9
FAN14G1113 Fragaria x ananassa HOM05D002360 ORTHO05D006297 1.0e-13 80.9 57 71.9
AL3G15160 Arabidopsis lyrata HOM05D002360 ORTHO05D006297 1.3e-13 80.5 52 76.9
unitig_899.g15576 Utricularia gibba HOM05D002360 ORTHO05D006297 1.3e-13 80.5 56 73.2
C05p62450 Brassica napus HOM05D002360 ORTHO05D006297 1.7e-13 80.1 52 76.9
HPP92_015926 Vanilla planifolia HOM05D002360 ORTHO05D006297 1.7e-13 80.1 57 71.9
Sp3g03690 Schrenkiella parvula HOM05D002360 ORTHO05D006297 2.3e-13 79.7 52 76.9
Migut.O00560 Erythranthe guttata HOM05D002360 ORTHO05D006297 3.0e-13 79.3 54 75.9
Nn1g02298 Nelumbo nucifera HOM05D002360 ORTHO05D006297 3.0e-13 79.3 57 70.2
Phvul.007G186000 Phaseolus vulgaris HOM05D002360 ORTHO05D006297 3.0e-13 79.3 45 84.4
PSO210G5722 Papaver somniferum HOM05D002360 ORTHO05D006297 8.6e-13 77.8 48 75.0
PSO761G0170 Papaver somniferum HOM05D002360 ORTHO05D006297 8.6e-13 77.8 48 75.0
THA.LOC104821685 Tarenaya hassleriana HOM05D002360 ORTHO05D006297 8.6e-13 77.8 52 75.0
Zm00001eb302940 Zea mays HOM05D002360 ORTHO05D006297 8.6e-13 77.8 57 68.4
CDE10G0593 Ceratophyllum demersum HOM05D002360 ORTHO05D006297 1.1e-12 77.4 42 83.3
Duzib106G0756 Durio zibethinus HOM05D002360 ORTHO05D006297 1.1e-12 77.4 57 71.9
ATR0737G142 Amborella trichopoda HOM05D002360 ORTHO05D006297 1.5e-12 77.0 45 77.8
Os07g0204900 Oryza sativa ssp. japonica HOM05D002360 ORTHO05D006297 1.9e-12 76.6 57 66.7
Dinv11540 Davidia involucrata HOM05D002360 ORTHO05D006297 2.5e-12 76.3 57 68.4
SEGI_13435 Sequoiadendron giganteum HOM05D002360 ORTHO05D006297 1.2e-11 73.9 47 76.6
Ah.06g192620 Amaranthus hybridus HOM05D000416 ORTHO05D000322 4.7e-11 72.0 55 72.7
CDE02G0904 Ceratophyllum demersum HOM05D002360 ORTHO05D006297 1.8e-10 70.1 42 76.2
Ciclev10002392m.g Citrus clementina HOM05D006905 ORTHO05D003398 2.3e-10 69.7 80 48.8
Migut.N01907 Erythranthe guttata HOM05D006905 ORTHO05D003398 8.9e-10 67.8 76 46.1
CDE02G1486 Ceratophyllum demersum HOM05D002360 ORTHO05D006297 1.2e-09 67.4 42 76.2
Mapoly0032s0099 Marchantia polymorpha HOM05D002360 ORTHO05D006297 1.2e-09 67.4 52 67.3
Nitab4.5_0013433g0040 Nicotiana tabacum HOM05D006905 ORTHO05D003398 1.2e-09 67.4 78 47.4
Potri.013G037050 Populus trichocarpa HOM05D006905 ORTHO05D003398 1.5e-09 67.0 79 44.3
SMO115G0128 Selaginella moellendorffii HOM05D002360 ORTHO05D006297 2.6e-09 66.2 40 77.5
CBR_g37129 Chara braunii HOM05D002360 ORTHO05D006297 3.4e-09 65.9 44 72.7
Prupe.6G339800 Prunus persica HOM05D006905 ORTHO05D003398 3.4e-09 65.9 84 46.4
GSVIVG01021847001 Vitis vinifera HOM05D006905 ORTHO05D003398 4.4e-09 65.5 113 41.6
Pp3c15_1320 Physcomitrium patens HOM05D002360 ORTHO05D006297 5.8e-09 65.1 57 63.2
Cpa.g.sc117.65 Carica papaya HOM05D006905 ORTHO05D003398 7.5e-09 64.7 78 50.0
Nitab4.5_0013433g0020 Nicotiana tabacum HOM05D002360 ORTHO05D006297 7.5e-09 64.7 35 85.7
Potri.013G036500 Populus trichocarpa HOM05D006905 ORTHO05D003398 7.5e-09 64.7 79 43.0
COL.COLO4_38037 Corchorus olitorius HOM05D006905 ORTHO05D003398 9.8e-09 64.3 89 46.1
Dinv11554 Davidia involucrata HOM05D006905 ORTHO05D003398 9.8e-09 64.3 81 45.7
Pp3c17_7790 Physcomitrium patens HOM05D002360 ORTHO05D006297 9.8e-09 64.3 48 68.8
Sc20g0000270 Simmondsia chinensis HOM05D006905 ORTHO05D003398 9.8e-09 64.3 86 47.7
Cfa006463 Carpinus fangiana HOM05D006905 ORTHO05D003398 1.3e-08 63.9 73 50.7
CAN.G134.166 Capsicum annuum HOM05D006905 ORTHO05D003398 2.2e-08 63.2 82 42.7
Nitab4.5_0002361g0060 Nicotiana tabacum HOM05D006905 ORTHO05D003398 2.2e-08 63.2 78 46.2
CiPaw.07G006400 Carya illinoinensis HOM05D006905 ORTHO05D003398 6.4e-08 61.6 61 50.8
Nn4g26306 Nelumbo nucifera HOM05D006905 ORTHO05D003398 6.4e-08 61.6 85 47.1
Solyc01g097820.4 Solanum lycopersicum HOM05D006905 ORTHO05D003398 6.4e-08 61.6 75 46.7
MD04G1220800 Malus domestica HOM05D006905 ORTHO05D003398 8.3e-08 61.2 77 44.2
Manes.09G156000 Manihot esculenta HOM05D006905 ORTHO05D003398 8.3e-08 61.2 81 42.0
Sopen01g041420 Solanum pennellii HOM05D006905 ORTHO05D003398 8.3e-08 61.2 75 46.7
Haze_04329 Corylus avellana HOM05D006905 ORTHO05D003398 1.1e-07 60.8 75 48.0
PGSC0003DMG400022508 Solanum tuberosum HOM05D006905 ORTHO05D003398 1.1e-07 60.8 75 49.3
TWI56G1496 Tripterygium wilfordii HOM05D006905 ORTHO05D003398 1.1e-07 60.8 89 43.8
Actinidia30925 Actinidia chinensis HOM05D006905 ORTHO05D003398 1.4e-07 60.5 81 45.7
Aqoxy5G00478 Aquilegia oxysepala HOM05D006905 ORTHO05D003398 1.4e-07 60.5 102 36.3
Peaxi162Scf00404g00025 Petunia axillaris HOM05D006905 ORTHO05D003398 1.4e-07 60.5 64 53.1
SGA_v2.0_scaffold5G02928 Striga asiatica HOM05D006905 ORTHO05D003398 1.4e-07 60.5 73 45.2
VMungo0720G0828 Vigna mungo HOM05D006905 ORTHO05D003398 1.4e-07 60.5 67 50.7
Atru.chr2.765 Acer truncatum HOM05D002360 ORTHO05D006297 3.2e-07 59.3 122 41.0
PGR083G1281 Punica granatum HOM05D006905 ORTHO05D003398 3.2e-07 59.3 84 41.7
Atru.chr2.757 Acer truncatum HOM05D002360 ORTHO05D006297 4.1e-07 58.9 33 87.9
RcHm_v2.0_Chr3g0451941 Rosa chinensis HOM05D006905 ORTHO05D003398 4.1e-07 58.9 79 40.5
Sed0006348 Sechium edule HOM05D006905 ORTHO05D003398 4.1e-07 58.9 84 40.5
Atru.chr2.731 Acer truncatum HOM05D006905 ORTHO05D003398 5.4e-07 58.5 90 41.1
Lj5g0004067 Lotus japonicus HOM05D006905 ORTHO05D003398 5.4e-07 58.5 70 45.7
PGR083G0691 Punica granatum HOM05D006905 ORTHO05D003398 5.4e-07 58.5 98 36.7
Thecc.05G193600 Theobroma cacao HOM05D006905 ORTHO05D003398 7.1e-07 58.2 77 42.9
Gohir.D08G246700 Gossypium hirsutum HOM05D006905 ORTHO05D003398 9.2e-07 57.8 77 41.6
Gorai.004G263200 Gossypium raimondii HOM05D006905 ORTHO05D003398 9.2e-07 57.8 77 41.6
Lalb_Chr06g0167991 Lupinus albus HOM05D006905 ORTHO05D003398 9.2e-07 57.8 63 49.2
Phvul.007G186100 Phaseolus vulgaris HOM05D006905 ORTHO05D003398 9.2e-07 57.8 67 47.8
ClCG02G016440 Citrullus lanatus HOM05D006905 ORTHO05D003398 1.6e-06 57.0 74 44.6
CANSAT54G0047 Cannabis sativa HOM05D006905 ORTHO05D003398 2.1e-06 56.6 84 42.9
Cre07.g314150 Chlamydomonas reinhardtii HOM05D002360 ORTHO05D006297 2.1e-06 56.6 36 75.0
Gohir.A08G226300 Gossypium hirsutum HOM05D006905 ORTHO05D003398 2.1e-06 56.6 77 40.3
ECA246G1419 Erigeron canadensis HOM05D006905 ORTHO05D003398 2.7e-06 56.2 66 45.5
HanXRQChr12g0384101 Helianthus annuus HOM05D006905 ORTHO05D003398 2.7e-06 56.2 140 34.3
Atru.chr2.743 Acer truncatum HOM05D006905 ORTHO05D003398 3.5e-06 55.8 90 40.0
Glyma.10G160600 Glycine max HOM05D006905 ORTHO05D003398 3.5e-06 55.8 67 47.8
Medtr1g081280 Medicago truncatula HOM05D006905 ORTHO05D003398 4.6e-06 55.5 70 48.6
Duzib128G0775 Durio zibethinus HOM05D006905 ORTHO05D003398 6.0e-06 55.1 77 44.2
TPR.G11158 Trifolium pratense HOM05D006905 ORTHO05D003398 6.0e-06 55.1 80 43.8
CSS0017923 Camellia sinensis var. sinensis HOM05D006905 ORTHO05D003398 7.8e-06 54.7 72 43.1
Lsat_1_v5_gn_3_28040 Lactuca sativa HOM05D006905 ORTHO05D003398 7.8e-06 54.7 76 43.4


User provided reference genes

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