Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g192380 Amaranthus hybridus HOM05D004252 ORTHO05D005101 1.5e-267 925.6 472 100.0
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 1.1e-225 786.6 466 86.9
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 2.7e-224 781.9 465 85.8
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 4.0e-220 768.1 468 83.8
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 4.4e-203 711.4 462 78.4
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 1.3e-202 709.9 466 76.6
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 6.0e-200 701.0 466 77.3
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 1.3e-199 699.9 466 76.6
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 6.6e-199 697.6 466 76.6
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 6.6e-199 697.6 466 77.5
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 8.7e-199 697.2 467 76.4
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 1.5e-198 696.4 466 75.5
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 3.6e-197 691.8 466 75.5
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 8.1e-197 690.6 466 75.5
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 8.1e-197 690.6 466 76.0
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 1.1e-196 690.3 466 75.8
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 4.0e-196 688.3 466 76.6
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 1.2e-195 686.8 466 74.2
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.0e-195 686.0 466 75.5
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 2.0e-195 686.0 466 74.2
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 2.6e-195 685.6 466 76.2
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 4.5e-195 684.9 487 73.3
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 7.6e-195 684.1 466 75.3
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 9.9e-195 683.7 466 75.1
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 1.3e-194 683.3 473 74.2
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 2.9e-194 682.2 466 75.3
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 2.9e-194 682.2 466 74.5
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 3.8e-194 681.8 466 75.8
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 4.9e-194 681.4 463 74.3
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 8.4e-194 680.6 466 74.9
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 1.1e-193 680.2 465 75.1
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 1.4e-193 679.9 464 73.3
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 5.4e-193 677.9 466 74.9
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 1.2e-192 676.8 473 73.8
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 3.5e-192 675.2 466 74.0
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 3.5e-192 675.2 466 73.8
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 4.6e-192 674.9 479 74.1
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 1.8e-191 672.9 466 73.4
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 2.3e-191 672.5 466 73.8
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 3.9e-191 671.8 475 72.0
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 3.9e-191 671.8 462 72.7
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 1.5e-190 669.8 465 72.5
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 1.9e-190 669.5 469 73.1
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 4.8e-189 664.8 462 73.4
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 1.4e-188 663.3 465 71.6
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 1.8e-188 662.9 467 71.3
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 1.8e-188 662.9 464 72.2
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 4.0e-188 661.8 467 71.3
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 5.3e-188 661.4 464 70.9
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 1.5e-187 659.8 471 70.3
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 4.5e-187 658.3 464 73.5
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 1.3e-186 656.8 481 70.1
FAN14G3887 Fragaria x ananassa HOM05D004252 ORTHO05D005101 1.7e-186 656.4 471 70.1
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 2.2e-186 656.0 471 69.9
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 2.9e-186 655.6 464 72.0
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 4.9e-186 654.8 462 71.9
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 1.9e-185 652.9 460 73.0
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 2.4e-185 652.5 464 70.9
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 7.1e-185 651.0 464 70.9
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 9.3e-185 650.6 458 75.8
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 9.3e-185 650.6 464 70.7
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 1.6e-184 649.8 476 69.1
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 2.7e-184 649.0 466 71.2
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 2.7e-184 649.0 464 70.3
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 2.7e-184 649.0 466 71.5
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 4.6e-184 648.3 465 70.8
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 4.6e-184 648.3 464 70.7
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 4.6e-184 648.3 466 70.8
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 2.3e-183 646.0 466 71.2
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 6.7e-183 644.4 464 70.5
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 8.7e-183 644.0 464 70.9
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 4.3e-182 641.7 464 71.6
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 9.6e-182 640.6 467 71.5
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 1.3e-181 640.2 466 69.7
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 1.6e-181 639.8 463 69.3
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 1.6e-181 639.8 467 69.8
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 6.2e-181 637.9 475 69.3
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 6.2e-181 637.9 475 69.3
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 6.9e-180 634.4 464 69.6
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 9.0e-180 634.0 464 69.8
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 1.2e-179 633.6 463 71.3
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 2.0e-179 632.9 466 68.7
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 1.4e-177 626.7 521 63.7
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 3.5e-176 622.1 463 69.5
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 3.5e-176 622.1 463 68.9
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 1.1e-174 617.1 466 69.3
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 1.5e-174 616.7 455 69.7
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 1.3e-173 613.6 466 69.1
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 6.9e-172 607.8 462 67.1
arahy.Tifrunner.gnm1.ann1.795G7S Arachis hypogaea HOM05D004252 ORTHO05D005101 1.2e-171 607.1 468 67.3
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 1.5e-171 606.7 463 68.3
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 7.6e-171 604.4 463 67.8
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 7.6e-171 604.4 463 68.0
CDE02G2007 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 1.7e-170 603.2 462 66.5
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 1.9e-169 599.7 465 66.2
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 5.7e-166 588.2 463 66.1
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 2.8e-165 585.9 410 73.7
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 3.7e-165 585.5 464 66.6
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 9.1e-164 580.9 464 66.4
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 9.1e-164 580.9 464 66.4
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 1.7e-162 576.6 465 64.5
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 5.5e-161 571.6 485 63.5
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 2.6e-158 562.8 465 63.0
Os08g0332800 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 1.8e-156 556.6 429 65.5
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 6.9e-156 554.7 474 60.3
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 9.1e-156 554.3 466 61.2
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 8.0e-152 541.2 476 57.8
Oeu027472.1 Olea europaea HOM05D004252 ORTHO05D005101 2.3e-151 539.7 364 74.2
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 8.8e-151 537.7 475 62.1
Cpa.g.c42029 Carica papaya HOM05D004252 ORTHO05D005101 1.7e-149 533.5 363 73.6
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 8.5e-146 521.2 366 72.1
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 3.2e-145 519.2 463 60.0
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 1.4e-143 513.8 494 55.3
arahy.Tifrunner.gnm1.ann1.8T8W7S Arachis hypogaea HOM05D004252 ORTHO05D005101 1.1e-140 504.2 366 70.2
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 5.9e-131 471.9 476 52.5
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 1.7e-117 427.2 461 50.3
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 4.6e-115 419.1 485 47.2
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 1.1e-111 407.9 469 45.8
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 6.8e-111 405.2 469 46.3
Atru.chr2.826 Acer truncatum HOM05D004252 ORTHO05D005101 9.7e-49 198.7 144 71.5
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 1.4e-36 158.3 123 67.5
SEGI_18631 Sequoiadendron giganteum HOM05D000173 ORTHO05D006747 1.7e-21 108.2 141 45.4
Cpa.g.sc1346.1 Carica papaya HOM05D004252 ORTHO05D005101 8.5e-21 105.9 70 78.6
Sopen00g013550 Solanum pennellii HOM05D004252 ORTHO05D005101 1.9e-20 104.8 71 76.1
arahy.Tifrunner.gnm1.ann1.82F4VT Arachis hypogaea HOM05D004252 ORTHO05D005101 2.5e-20 104.4 98 58.2
CAN.G1116.5 Capsicum annuum HOM05D004252 ORTHO05D005101 1.4e-18 98.6 70 71.4
MCO11G870 Micromonas commoda HOM05D004252 ORTHO05D005101 7.0e-15 86.3 206 29.1
SEGI_17147 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 4.5e-14 83.6 65 66.2
SEGI_02854 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 5.0e-13 80.1 70 60.0
Cre03.g190550 Chlamydomonas reinhardtii HOM05D004252 ORTHO05D005101 8.9e-10 69.3 190 28.4


User provided reference genes

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