Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 7.7e-109 397.1 197 100.0
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 9.5e-91 337.0 196 82.1
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 5.2e-89 331.3 193 82.4
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 6.8e-89 330.9 193 82.9
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 3.4e-88 328.6 193 81.3
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 3.5e-85 318.5 193 77.7
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 6.9e-65 251.1 190 61.6
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 2.6e-64 249.2 189 63.5
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 8.4e-63 244.2 190 62.1
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 2.1e-61 239.6 189 62.4
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 2.1e-61 239.6 190 61.1
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 2.7e-61 239.2 189 61.4
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 1.0e-60 237.3 192 60.4
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 1.3e-60 236.9 190 60.0
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 5.1e-60 235.0 191 58.6
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 6.6e-60 234.6 188 61.7
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 8.7e-60 234.2 190 59.5
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 1.1e-59 233.8 190 57.9
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 1.5e-59 233.4 192 59.4
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 1.9e-59 233.0 195 61.0
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 2.5e-59 232.6 190 60.5
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 2.5e-59 232.6 191 57.1
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 3.3e-59 232.3 190 60.0
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 3.3e-59 232.3 192 59.4
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 5.6e-59 231.5 194 61.3
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 5.6e-59 231.5 190 59.5
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 7.3e-59 231.1 192 57.8
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 2.1e-58 229.6 189 58.7
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 3.6e-58 228.8 193 58.0
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 2.4e-57 226.1 189 58.2
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 2.4e-57 226.1 190 56.3
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 3.1e-57 225.7 190 58.9
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 3.1e-57 225.7 190 58.9
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 3.1e-57 225.7 190 56.8
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 5.3e-57 224.9 190 58.4
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 6.9e-57 224.6 190 58.4
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 1.2e-56 223.8 191 56.0
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 1.5e-56 223.4 191 57.1
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 2.0e-56 223.0 190 57.4
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 2.6e-56 222.6 191 57.6
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 3.4e-56 222.2 191 56.5
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 7.6e-56 221.1 191 56.0
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 7.6e-56 221.1 190 57.9
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 7.6e-56 221.1 190 56.8
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 9.9e-56 220.7 191 55.5
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 1.3e-55 220.3 191 56.5
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.7e-55 219.9 191 56.0
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 1.7e-55 219.9 191 56.0
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 2.2e-55 219.5 194 55.2
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 2.2e-55 219.5 191 55.5
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 2.9e-55 219.2 190 57.9
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 3.8e-55 218.8 190 59.5
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 3.8e-55 218.8 191 55.5
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 8.4e-55 217.6 190 55.3
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.4e-54 216.9 191 55.0
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 1.9e-54 216.5 195 55.4
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 1.9e-54 216.5 192 53.6
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 2.4e-54 216.1 192 53.6
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 2.4e-54 216.1 191 55.5
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 5.4e-54 214.9 192 55.2
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 7.1e-54 214.5 192 53.1
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 9.3e-54 214.2 192 53.6
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 1.2e-53 213.8 190 56.8
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 1.2e-53 213.8 196 53.1
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.6e-53 213.4 192 53.6
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 2.7e-53 212.6 199 55.3
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 2.7e-53 212.6 192 54.2
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 2.7e-53 212.6 192 56.2
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 2.7e-53 212.6 192 54.7
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 3.5e-53 212.2 192 54.7
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 3.5e-53 212.2 191 55.5
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 6.0e-53 211.5 192 54.2
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 7.9e-53 211.1 192 53.1
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 1.0e-52 210.7 192 54.7
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 1.0e-52 210.7 192 54.7
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 1.3e-52 210.3 223 52.5
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.3e-52 210.3 222 51.4
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 1.8e-52 209.9 192 52.6
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 2.3e-52 209.5 189 54.5
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 2.3e-52 209.5 195 53.3
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 3.0e-52 209.1 189 54.5
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 3.9e-52 208.8 192 52.6
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 3.9e-52 208.8 217 50.2
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 5.1e-52 208.4 192 53.6
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 6.7e-52 208.0 192 53.1
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 8.7e-52 207.6 190 51.1
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 2.5e-51 206.1 192 51.6
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 2.5e-51 206.1 239 47.3
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 5.6e-51 204.9 189 54.0
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 5.6e-51 204.9 189 54.0
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 7.4e-51 204.5 217 49.3
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 1.3e-50 203.8 165 61.2
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 2.1e-50 203.0 256 44.9
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 2.8e-50 202.6 191 52.9
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 4.8e-50 201.8 217 49.8
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 6.2e-50 201.4 193 50.8
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 1.1e-49 200.7 196 51.0
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 1.4e-49 200.3 204 52.5
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 4.0e-49 198.7 230 47.0
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 9.0e-49 197.6 195 50.3
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 9.0e-49 197.6 217 47.5
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 4.9e-47 191.8 196 49.5
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 7.1e-46 188.0 223 45.7
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 1.0e-44 184.1 147 64.6
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 1.0e-44 184.1 189 50.8
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 1.1e-43 180.6 223 43.5
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 1.9e-43 179.9 223 42.6
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 1.9e-43 179.9 223 43.5
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 1.9e-43 179.9 223 43.9
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 4.3e-43 178.7 165 50.9
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 1.3e-42 177.2 191 44.5
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 8.2e-42 174.5 193 49.7
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 8.2e-42 174.5 149 56.4
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 1.0e-39 167.5 244 38.5
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 2.2e-39 166.4 145 57.2
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 1.4e-38 163.7 190 43.7
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 1.9e-38 163.3 143 56.6
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 2.5e-38 162.9 199 45.7
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 4.2e-38 162.2 130 58.5
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 9.3e-38 161.0 155 52.3
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 5.1e-36 155.2 130 56.9
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 4.3e-35 152.1 190 43.7
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 7.4e-35 151.4 191 41.9
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 7.4e-35 151.4 191 41.9
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 6.3e-34 148.3 190 44.2
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 3.1e-33 146.0 119 59.7
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 3.1e-33 146.0 192 42.7
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 6.9e-33 144.8 140 50.0
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 7.7e-32 141.4 191 42.4
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 3.8e-31 139.0 151 47.7
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 3.2e-30 136.0 154 50.6
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 4.2e-30 135.6 185 37.8
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 7.2e-30 134.8 187 41.2
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 7.2e-30 134.8 189 39.2
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.0e-28 131.0 192 39.6
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 2.5e-27 126.3 184 39.1
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 5.7e-27 125.2 191 32.5
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 4.1e-25 119.0 165 41.2
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 5.3e-25 118.6 108 51.9
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 6.9e-25 118.2 113 52.2
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 3.4e-24 115.9 112 50.9
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 1.0e-23 114.4 113 51.3
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 8.5e-23 111.3 114 50.0
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 8.5e-23 111.3 105 53.3
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 4.2e-22 109.0 86 57.0
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 3.6e-21 105.9 107 50.5
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 1.7e-15 87.0 191 31.9
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 8.5e-15 84.7 73 54.8
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 1.2e-13 80.9 169 30.8
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 5.2e-12 75.5 68 55.9
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 5.2e-12 75.5 106 40.6
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 4.1e-09 65.9 50 56.0
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 5.3e-09 65.5 198 24.2
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.6e-08 63.9 48 58.3
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 1.5e-06 57.4 111 27.9


User provided reference genes

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