Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g188810 Amaranthus hybridus HOM05D006573 ORTHO05D008073 1.2e-244 849.4 425 100.0
AUR62005294 Chenopodium quinoa HOM05D006573 ORTHO05D008073 1.2e-194 683.3 482 72.0
AUR62000660 Chenopodium quinoa HOM05D006573 ORTHO05D008073 4.9e-193 677.9 482 71.2
EL10Ac4g09803 Beta vulgaris HOM05D006573 ORTHO05D008073 8.7e-190 667.2 469 74.0
Hund07152 Selenicereus undatus HOM05D006573 ORTHO05D008073 3.1e-163 578.9 469 65.2
Potri.013G053100 Populus trichocarpa HOM05D006573 ORTHO05D008073 1.3e-158 563.5 367 77.4
Eucgr.B02180 Eucalyptus grandis HOM05D006573 ORTHO05D008073 2.3e-158 562.8 366 73.8
GSVIVG01026405001 Vitis vinifera HOM05D006573 ORTHO05D008073 1.1e-157 560.5 374 73.8
Manes.09G144600 Manihot esculenta HOM05D006573 ORTHO05D008073 8.2e-156 554.3 367 73.6
BraA06t23762Z Brassica rapa HOM05D006573 ORTHO05D008073 1.4e-155 553.5 369 75.6
C05p06650 Brassica napus HOM05D006573 ORTHO05D008073 3.1e-155 552.4 369 75.9
Sc09g0001730 Simmondsia chinensis HOM05D006573 ORTHO05D008073 3.1e-155 552.4 469 60.8
BolC5t29425H Brassica oleracea HOM05D006573 ORTHO05D008073 4.1e-155 552.0 369 75.9
CSS0006565 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 6.9e-155 551.2 371 73.0
Hma1.2p1_0123F.1_g058030 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 6.9e-155 551.2 480 60.0
A06p05540 Brassica napus HOM05D006573 ORTHO05D008073 9.0e-155 550.8 369 75.3
Ciclev10019925m.g Citrus clementina HOM05D006573 ORTHO05D008073 9.0e-155 550.8 486 58.2
Cpa.g.sc51.78 Carica papaya HOM05D006573 ORTHO05D008073 2.6e-154 549.3 379 72.3
THA.LOC104805797 Tarenaya hassleriana HOM05D006573 ORTHO05D008073 3.4e-154 548.9 376 71.8
CANSAT21G0678 Cannabis sativa HOM05D006573 ORTHO05D008073 4.5e-154 548.5 367 73.8
Sabra13G0048100 Salix brachista HOM05D006573 ORTHO05D008073 5.9e-154 548.1 417 68.3
Nn1g07946 Nelumbo nucifera HOM05D006573 ORTHO05D008073 7.6e-154 547.7 365 73.7
Cc09_g03200 Coffea canephora HOM05D006573 ORTHO05D008073 2.9e-153 545.8 456 61.2
Thhalv10007587m.g Eutrema salsugineum HOM05D006573 ORTHO05D008073 3.8e-153 545.4 369 74.8
MBI11_g07442_MAGBIO Magnolia biondii HOM05D006573 ORTHO05D008073 3.8e-153 545.4 368 72.6
TAR362G0441 Trochodendron aralioides HOM05D006573 ORTHO05D008073 5.0e-153 545.0 368 72.8
AL1G18980 Arabidopsis lyrata HOM05D006573 ORTHO05D008073 4.2e-152 542.0 370 73.8
Actinidia06814 Actinidia chinensis HOM05D006573 ORTHO05D008073 5.5e-152 541.6 368 72.0
Thecc.05G259800 Theobroma cacao HOM05D006573 ORTHO05D008073 5.5e-152 541.6 421 66.0
RcHm_v2.0_Chr3g0448661 Rosa chinensis HOM05D006573 ORTHO05D008073 7.2e-152 541.2 484 58.3
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 9.4e-152 540.8 367 73.3
Sp1g07210 Schrenkiella parvula HOM05D006573 ORTHO05D008073 9.4e-152 540.8 369 72.6
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 1.2e-151 540.4 371 72.5
Lj1g0015745 Lotus japonicus HOM05D006573 ORTHO05D008073 3.6e-151 538.9 367 71.1
Duzib177G1122 Durio zibethinus HOM05D006573 ORTHO05D008073 1.0e-150 537.3 421 64.8
Aa31sc20G120 Aethionema arabicum HOM05D006573 ORTHO05D008073 1.4e-150 537.0 365 70.7
Gohir.D11G250400 Gossypium hirsutum HOM05D006573 ORTHO05D008073 1.4e-150 537.0 384 72.1
Gorai.007G268500 Gossypium raimondii HOM05D006573 ORTHO05D008073 1.4e-150 537.0 384 72.1
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 1.4e-150 537.0 370 70.8
MSTRG.8177 Avicennia marina HOM05D006573 ORTHO05D008073 1.8e-150 536.6 379 72.6
CARHR008450 Cardamine hirsuta HOM05D006573 ORTHO05D008073 1.8e-150 536.6 369 72.6
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 1.8e-150 536.6 371 70.4
Nitab4.5_0012098g0010 Nicotiana tabacum HOM05D006573 ORTHO05D008073 1.8e-150 536.6 376 71.0
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 3.0e-150 535.8 367 71.4
Nitab4.5_0000344g0030 Nicotiana tabacum HOM05D006573 ORTHO05D008073 8.8e-150 534.3 376 70.5
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 1.5e-149 533.5 372 70.2
FAN05G3303 Fragaria x ananassa HOM05D006573 ORTHO05D008073 2.5e-149 532.7 488 58.0
MD12G1255200 Malus domestica HOM05D006573 ORTHO05D008073 3.3e-149 532.3 477 58.9
Haze_04495 Corylus avellana HOM05D006573 ORTHO05D008073 4.3e-149 531.9 364 69.2
FAN05G2122 Fragaria x ananassa HOM05D006573 ORTHO05D008073 4.3e-149 531.9 488 57.8
Aqoxy2G03898 Aquilegia oxysepala HOM05D006573 ORTHO05D008073 7.4e-149 531.2 368 72.3
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 7.4e-149 531.2 372 71.5
Prupe.6G356100 Prunus persica HOM05D006573 ORTHO05D008073 9.7e-149 530.8 368 69.8
Migut.F02066 Erythranthe guttata HOM05D006573 ORTHO05D008073 2.2e-148 529.6 375 68.8
CAN.G29.20 Capsicum annuum HOM05D006573 ORTHO05D008073 6.3e-148 528.1 352 72.7
SGA_v2.0_scaffold13G06342 Striga asiatica HOM05D006573 ORTHO05D008073 8.2e-148 527.7 375 68.0
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 1.4e-147 526.9 367 70.0
FAN09G4254 Fragaria x ananassa HOM05D006573 ORTHO05D008073 2.4e-147 526.2 494 56.1
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 4.1e-147 525.4 377 69.8
CDE05G0683 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 5.3e-147 525.0 368 70.1
FAN14G5930 Fragaria x ananassa HOM05D006573 ORTHO05D008073 9.1e-147 524.2 387 66.9
Peaxi162Scf01011g00215 Petunia axillaris HOM05D006573 ORTHO05D008073 9.1e-147 524.2 346 73.1
AT1G08550 Arabidopsis thaliana HOM05D006573 ORTHO05D008073 1.5e-146 523.5 370 71.9
PGSC0003DMG400010688 Solanum tuberosum HOM05D006573 ORTHO05D008073 2.0e-146 523.1 362 71.5
Sopen04g022050 Solanum pennellii HOM05D006573 ORTHO05D008073 3.4e-146 522.3 362 72.9
FvH4_6g01130 Fragaria vesca HOM05D006573 ORTHO05D008073 4.5e-146 521.9 387 66.4
HPP92_020222 Vanilla planifolia HOM05D001545 ORTHO05D001600 7.7e-146 521.2 367 68.9
PSO017G7064 Papaver somniferum HOM05D006573 ORTHO05D008073 1.0e-145 520.8 374 71.4
Solyc04g050930.3 Solanum lycopersicum HOM05D006573 ORTHO05D008073 1.0e-145 520.8 362 72.7
CSS0039030 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 1.7e-145 520.0 365 71.0
PSO063G7541 Papaver somniferum HOM05D006573 ORTHO05D008073 1.7e-145 520.0 375 70.4
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 2.2e-145 519.6 367 69.5
Carub.0001s0791 Capsella rubella HOM05D006573 ORTHO05D008073 2.9e-145 519.2 370 71.6
Atru.chr2.1254 Acer truncatum HOM05D006573 ORTHO05D008073 1.1e-144 517.3 485 57.7
Oeu054601.1 Olea europaea HOM05D006573 ORTHO05D008073 1.1e-144 517.3 412 66.0
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 3.2e-144 515.8 367 68.9
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 5.5e-144 515.0 364 68.1
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 2.7e-143 512.7 415 65.3
ECA248G2645 Erigeron canadensis HOM05D006573 ORTHO05D008073 4.7e-143 511.9 387 69.3
BcaB07g34098 Brassica carinata HOM05D006573 ORTHO05D008073 6.1e-143 511.5 369 72.4
HanXRQChr13g0406621 Helianthus annuus HOM05D006573 ORTHO05D008073 7.9e-143 511.1 439 62.2
Lsat_1_v5_gn_7_62281 Lactuca sativa HOM05D006573 ORTHO05D008073 7.9e-143 511.1 379 68.3
Lj2A407T38 Lonicera japonica HOM05D006573 ORTHO05D008073 9.7e-141 504.2 386 67.4
Gohir.A11G241000 Gossypium hirsutum HOM05D006573 ORTHO05D008073 2.2e-140 503.1 383 67.9
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 2.2e-140 503.1 367 69.2
Lj2A405T39 Lonicera japonica HOM05D006573 ORTHO05D008073 3.7e-140 502.3 355 69.9
TWI34G1215 Tripterygium wilfordii HOM05D006573 ORTHO05D008073 4.8e-140 501.9 368 69.0
DCAR_013654 Daucus carota HOM05D006573 ORTHO05D008073 1.2e-138 497.3 408 62.0
CiPaw.07G075700 Carya illinoinensis HOM05D006573 ORTHO05D008073 1.3e-132 477.2 368 63.9
vmacro12852 Vaccinium macrocarpon HOM05D006573 ORTHO05D008073 5.9e-130 468.4 526 48.9
CsaV3_2G010250 Cucumis sativus L. HOM05D006573 ORTHO05D008073 8.5e-129 464.5 303 71.6
ClCG11G010060 Citrullus lanatus HOM05D006573 ORTHO05D008073 2.5e-128 463.0 303 71.3
MELO3C008677.2 Cucumis melo HOM05D006573 ORTHO05D008073 1.2e-127 460.7 385 62.6
Sed0012720 Sechium edule HOM05D006573 ORTHO05D008073 4.0e-126 455.7 413 59.1
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 1.7e-124 450.3 359 66.6
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 4.8e-124 448.7 359 66.6
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 3.5e-122 442.6 411 57.7
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 1.7e-121 440.3 348 61.8
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 2.2e-121 439.9 366 60.4
COL.COLO4_20557 Corchorus olitorius HOM05D006573 ORTHO05D008073 1.2e-114 417.5 286 71.0
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 3.5e-114 416.0 380 56.8
SMO270G0104 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 8.3e-108 394.8 335 58.2
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 7.0e-107 391.7 406 53.9
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 2.5e-104 383.3 353 54.7
CDE05G0621 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 9.2e-91 338.2 241 65.6
SEGI_19143 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 3.9e-89 332.8 273 55.7
Hma1.2p1_0123F.1_g058020 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 2.1e-87 327.0 291 58.4
Lj2C408T2 Lonicera japonica HOM05D006573 ORTHO05D008073 2.4e-83 313.5 351 53.0
unitig_46.g17980 Utricularia gibba HOM05D006573 ORTHO05D008073 1.6e-79 300.8 193 73.6
Os04g0379700 Oryza sativa ssp. japonica HOM05D006573 ORTHO05D008073 3.1e-78 296.6 244 61.9
PGSC0003DMG400010690 Solanum tuberosum HOM05D006573 ORTHO05D008073 1.3e-73 281.2 201 68.2
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 2.1e-58 230.7 275 43.6
PGSC0003DMG400020993 Solanum tuberosum HOM05D006573 ORTHO05D008073 2.5e-56 223.8 180 60.6
SMO334G0031 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 3.3e-56 223.4 204 49.5
SMO297G0027 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 4.3e-56 223.0 204 49.5
SMO270G0143 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 3.7e-55 219.9 204 49.0
SMO297G0014 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 8.1e-55 218.8 204 49.0
PRCOL_00001224 Prasinoderma coloniale HOM05D006573 ORTHO05D008073 2.0e-53 214.2 300 39.0
unitig_46.g17981 Utricularia gibba HOM05D006573 ORTHO05D008073 6.7e-41 172.6 141 68.8
SMO266G0012 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.7e-18 97.4 98 45.9
Haze_04503 Corylus avellana HOM05D006573 ORTHO05D008073 2.2e-15 87.8 93 53.8
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 4.1e-14 83.6 264 25.8
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 2.9e-12 77.4 280 22.9
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 3.8e-12 77.0 315 25.7
Os01g0716400 Oryza sativa ssp. japonica HOM05D006367 ORTHO05D007942 3.8e-12 77.0 264 22.3
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 1.1e-11 75.5 271 24.7
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 1.9e-11 74.7 306 23.5
Haze_04505 Corylus avellana HOM05D006573 ORTHO05D008073 3.2e-11 73.9 84 50.0
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 4.2e-11 73.6 278 22.3
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 4.2e-11 73.6 278 22.3
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 7.2e-11 72.8 278 22.3
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 7.2e-11 72.8 275 24.4
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 9.4e-11 72.4 278 22.3
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 1.2e-10 72.0 265 22.6
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 2.7e-10 70.9 288 21.9
AT2G21860 Arabidopsis thaliana HOM05D006367 ORTHO05D007942 3.6e-10 70.5 271 24.0
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 4.7e-10 70.1 271 22.9
Carub.0004s0089 Capsella rubella HOM05D006367 ORTHO05D007942 6.1e-10 69.7 263 23.2
CARHR112860 Cardamine hirsuta HOM05D006367 ORTHO05D007942 1.0e-09 68.9 271 24.0
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 1.8e-09 68.2 134 25.4
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 4.0e-09 67.0 233 21.9
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 6.8e-09 66.2 242 22.7
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 6.8e-09 66.2 160 22.5
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 2.0e-08 64.7 134 23.9
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 4.4e-08 63.5 157 22.3
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 5.7e-08 63.2 135 25.2
MBI04_g33338_MAGBIO Magnolia biondii HOM05D006367 ORTHO05D007942 9.7e-08 62.4 134 22.4
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 1.7e-07 61.6 160 21.2
AUR62039784 Chenopodium quinoa HOM05D006367 ORTHO05D007942 2.8e-07 60.8 162 23.5
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 6.3e-07 59.7 134 23.9


User provided reference genes

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