Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.8e-141 506.1 305 100.0
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.7e-129 465.7 309 92.9
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.1e-121 439.5 296 89.9
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 1.5e-103 380.2 297 75.8
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 3.1e-96 355.9 304 74.3
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 2.2e-86 323.2 304 61.2
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 1.1e-77 294.3 304 58.2
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.4e-77 293.1 200 96.5
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 1.0e-75 287.7 291 67.4
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 1.5e-74 283.9 263 60.5
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 1.3e-73 280.8 300 61.3
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 1.4e-72 277.3 305 57.4
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 3.1e-72 276.2 292 54.1
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 1.2e-71 274.2 302 62.6
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 2.0e-71 273.5 307 61.2
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 2.6e-71 273.1 306 56.9
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 2.6e-71 273.1 293 58.7
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 4.5e-71 272.3 306 59.2
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 5.8e-71 271.9 293 58.4
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 7.6e-71 271.6 311 62.1
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 4.9e-70 268.9 291 54.3
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 8.4e-70 268.1 299 61.5
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 1.4e-69 267.3 304 55.6
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 4.2e-69 265.8 291 53.3
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 4.2e-69 265.8 286 57.7
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 7.1e-69 265.0 307 59.9
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 9.3e-69 264.6 308 51.6
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 1.2e-68 264.2 302 57.0
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 1.2e-68 264.2 301 52.8
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 1.2e-68 264.2 261 59.0
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 1.2e-68 264.2 303 52.1
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 4.6e-68 262.3 310 57.4
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 7.9e-68 261.5 307 59.9
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.0e-67 261.2 295 54.2
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 2.3e-67 260.0 294 59.5
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 2.3e-67 260.0 289 51.6
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 2.3e-67 260.0 307 59.0
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 3.9e-67 259.2 261 54.8
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 6.7e-67 258.5 306 54.2
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 1.1e-66 257.7 262 61.8
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 1.1e-66 257.7 263 64.3
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 1.9e-66 256.9 262 64.9
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 1.9e-66 256.9 287 58.5
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 2.5e-66 256.5 262 63.0
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 3.3e-66 256.1 289 61.6
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 3.3e-66 256.1 289 53.6
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 3.3e-66 256.1 289 53.6
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 4.3e-66 255.8 307 61.6
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 7.4e-66 255.0 261 57.1
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 1.6e-65 253.8 301 54.8
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 2.1e-65 253.4 289 52.6
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 1.1e-64 251.1 289 52.6
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 1.1e-64 251.1 296 56.4
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 1.4e-64 250.8 286 53.8
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 1.4e-64 250.8 301 53.8
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 1.8e-64 250.4 307 59.6
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 5.3e-64 248.8 308 58.4
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 9.0e-64 248.1 262 61.1
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 9.0e-64 248.1 307 56.4
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.2e-63 247.7 256 62.9
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.2e-63 247.7 297 52.5
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 1.2e-63 247.7 304 55.6
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 1.5e-63 247.3 298 54.0
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 3.4e-63 246.1 299 50.8
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 5.8e-63 245.4 263 58.2
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 7.6e-63 245.0 291 59.8
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 9.9e-63 244.6 299 56.9
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 9.9e-63 244.6 299 56.9
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 9.9e-63 244.6 299 56.9
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 9.9e-63 244.6 298 53.7
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 2.2e-62 243.4 299 53.5
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 2.2e-62 243.4 266 55.6
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 2.2e-62 243.4 285 50.2
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 2.9e-62 243.0 291 54.0
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 3.8e-62 242.7 295 58.6
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 3.8e-62 242.7 285 58.9
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 3.8e-62 242.7 289 59.9
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 3.8e-62 242.7 294 53.7
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 4.9e-62 242.3 298 52.0
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 8.4e-62 241.5 292 52.4
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 8.4e-62 241.5 248 63.3
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 1.4e-61 240.7 261 55.2
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 1.4e-61 240.7 298 51.7
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 1.4e-61 240.7 296 54.4
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.4e-61 240.7 291 59.5
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 1.4e-61 240.7 295 53.6
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 1.4e-61 240.7 261 54.8
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.9e-61 240.4 294 58.8
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 1.9e-61 240.4 292 51.7
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 3.2e-61 239.6 299 53.2
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 5.5e-61 238.8 262 53.1
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 5.5e-61 238.8 291 59.1
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 7.1e-61 238.4 299 53.5
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 9.3e-61 238.0 291 58.8
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 1.2e-60 237.7 292 57.5
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 1.6e-60 237.3 294 52.4
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 2.1e-60 236.9 299 54.8
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 1.0e-59 234.6 299 55.5
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 1.3e-59 234.2 302 48.3
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 1.8e-59 233.8 303 52.8
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 1.8e-59 233.8 294 53.1
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 2.3e-59 233.4 302 55.3
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 2.3e-59 233.4 300 55.0
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 5.1e-59 232.3 307 56.4
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 6.7e-59 231.9 304 54.9
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 1.5e-58 230.7 263 58.9
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 1.9e-58 230.3 297 54.9
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 2.5e-58 229.9 292 56.5
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 7.4e-58 228.4 306 53.9
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 4.8e-57 225.7 293 50.9
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 6.2e-57 225.3 265 55.1
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 8.2e-57 224.9 291 51.9
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 1.1e-56 224.6 288 51.7
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 1.8e-56 223.8 294 49.0
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 1.8e-56 223.8 303 54.8
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 9.0e-56 221.5 255 62.4
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 1.2e-55 221.1 290 49.0
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 7.6e-55 218.4 238 58.8
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 1.0e-54 218.0 305 48.9
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 8.4e-54 214.9 299 52.5
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 8.4e-54 214.9 263 58.9
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 3.2e-53 213.0 299 52.2
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 5.5e-53 212.2 302 44.7
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 7.9e-52 208.4 301 52.8
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 1.0e-51 208.0 288 52.8
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 2.3e-51 206.8 259 58.3
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 5.1e-51 205.7 294 52.0
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.9e-50 203.8 281 47.7
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 9.7e-50 201.4 295 51.9
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.5e-47 194.1 301 50.5
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 5.0e-46 189.1 280 45.7
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 5.5e-45 185.7 191 62.3
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 1.3e-43 181.0 199 58.8
Ah.06g188140 Amaranthus hybridus HOM05D003921 ORTHO05D004394 3.9e-43 179.5 157 68.2
Hund09280 Selenicereus undatus HOM05D003921 ORTHO05D004394 1.9e-42 177.2 173 66.5
Hund09282 Selenicereus undatus HOM05D003921 ORTHO05D004394 1.9e-42 177.2 173 66.5
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 6.3e-41 172.2 255 47.8
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 1.4e-40 171.0 212 48.6
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 6.9e-40 168.7 140 62.9
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 3.4e-39 166.4 298 39.9
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 5.9e-39 165.6 239 43.1
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 1.3e-38 164.5 272 39.3
Ah.06g188080 Amaranthus hybridus HOM05D003921 ORTHO05D004394 1.7e-38 164.1 95 90.5
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 2.7e-36 156.8 269 43.5
DCAR_018123 Daucus carota HOM05D003921 ORTHO05D004394 6.7e-35 152.1 305 45.2
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 1.1e-34 151.4 246 45.1
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 2.6e-34 150.2 132 56.8
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 2.2e-33 147.1 98 67.3
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 8.2e-33 145.2 146 48.6
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 3.1e-32 143.3 159 50.3
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 7.7e-31 138.7 265 39.2
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 1.0e-30 138.3 286 33.6
Nn1g01220 Nelumbo nucifera HOM05D003921 ORTHO05D004394 2.5e-29 133.7 138 52.9
MSTRG.5717 Avicennia marina HOM05D003921 ORTHO05D004394 4.2e-29 132.9 188 61.7
Ca_27419_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 4.2e-29 132.9 187 60.4
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 2.1e-28 130.6 288 37.2
MSTRG.14095 Avicennia marina HOM05D003921 ORTHO05D004394 4.7e-28 129.4 167 51.5
Oeu019920.1 Olea europaea HOM05D003921 ORTHO05D004394 8.8e-27 125.2 311 38.6
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 5.7e-26 122.5 142 48.6
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 1.3e-25 121.3 266 35.0
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 2.4e-24 117.1 274 35.0
Cre07.g351750 Chlamydomonas reinhardtii HOM05D003921 ORTHO05D004394 9.1e-24 115.2 242 39.3
PRCOL_00003036 Prasinoderma coloniale HOM05D003921 ORTHO05D004394 1.6e-23 114.4 254 36.2
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.2e-20 104.8 102 52.9
MCO16G303 Micromonas commoda HOM05D003921 ORTHO05D004394 6.1e-20 102.4 210 32.9
Nn4g26407 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.8e-19 100.9 142 43.7
Actinidia13554 Actinidia chinensis HOM05D003921 ORTHO05D004394 7.5e-18 95.5 72 63.9
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 4.8e-17 92.8 192 37.0
Prupe.2G115300 Prunus persica HOM05D003921 ORTHO05D004394 7.0e-16 89.0 218 37.2
Actinidia39598 Actinidia chinensis HOM05D003921 ORTHO05D004394 9.1e-16 88.6 112 50.9
Nn4g26401 Nelumbo nucifera HOM05D003921 ORTHO05D004394 1.1e-13 81.6 77 57.1
Ca_29708_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 2.0e-10 70.9 87 56.3
Dinv10307 Davidia involucrata HOM05D003921 ORTHO05D004394 4.4e-10 69.7 51 64.7
Gohir.D12G264333 Gossypium hirsutum HOM05D003921 ORTHO05D004394 2.2e-09 67.4 245 28.2
Actinidia31394 Actinidia chinensis HOM05D003921 ORTHO05D004394 2.8e-09 67.0 174 35.6
Prupe.2G115400 Prunus persica HOM05D003921 ORTHO05D004394 2.4e-08 63.9 57 63.2
CDE08G0595 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 2.7e-07 60.5 110 38.2
Gorai.008G283700 Gossypium raimondii HOM05D003921 ORTHO05D004394 7.7e-07 58.9 283 26.9
FvH4_1g22470 Fragaria vesca HOM05D003475 ORTHO05D035452 1.0e-06 58.5 67 46.3


User provided reference genes

Program Settings