Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g186030 Amaranthus hybridus HOM05D006187 ORTHO05D007621 2.7e-120 435.3 209 100.0
AUR62020447 Chenopodium quinoa HOM05D006187 ORTHO05D007621 5.3e-108 394.4 209 88.0
EL10Ac4g07806 Beta vulgaris HOM05D006187 ORTHO05D007621 4.5e-107 391.3 209 89.0
AUR62015764 Chenopodium quinoa HOM05D006187 ORTHO05D007621 5.0e-106 387.9 209 86.1
COL.COLO4_09662 Corchorus olitorius HOM05D006187 ORTHO05D007621 1.2e-104 383.3 209 85.2
Sc16g0006050 Simmondsia chinensis HOM05D006187 ORTHO05D007621 1.5e-102 376.3 209 85.6
Duzib170G0579 Durio zibethinus HOM05D006187 ORTHO05D007621 2.0e-102 375.9 209 83.7
Gohir.D01G066500 Gossypium hirsutum HOM05D006187 ORTHO05D007621 2.6e-102 375.6 209 83.3
Thecc.07G036900 Theobroma cacao HOM05D006187 ORTHO05D007621 2.6e-102 375.6 209 82.8
LjContig00272g0005891 Lotus japonicus HOM05D006187 ORTHO05D007621 3.3e-102 375.2 209 82.3
Gorai.002G088500 Gossypium raimondii HOM05D006187 ORTHO05D007621 9.7e-102 373.6 209 82.8
CANSAT11G0252 Cannabis sativa HOM05D006187 ORTHO05D007621 1.3e-101 373.2 209 81.3
Prupe.4G212700 Prunus persica HOM05D006187 ORTHO05D007621 1.3e-101 373.2 209 82.3
Nn1g03532 Nelumbo nucifera HOM05D006187 ORTHO05D007621 1.7e-101 372.9 209 81.3
Psat2g010920 Pisum sativum HOM05D006187 ORTHO05D007621 1.7e-101 372.9 209 81.3
TAR626G1058 Trochodendron aralioides HOM05D006187 ORTHO05D007621 1.7e-101 372.9 209 83.3
MD11G1218600 Malus domestica HOM05D006187 ORTHO05D007621 2.2e-101 372.5 209 82.8
DCAR_022562 Daucus carota HOM05D006187 ORTHO05D007621 2.8e-101 372.1 209 81.8
Gohir.A01G079500 Gossypium hirsutum HOM05D006187 ORTHO05D007621 2.8e-101 372.1 209 82.8
Ciclev10009486m.g Citrus clementina HOM05D006187 ORTHO05D007621 3.7e-101 371.7 209 83.7
Sed0017183 Sechium edule HOM05D006187 ORTHO05D007621 3.7e-101 371.7 209 81.8
arahy.Tifrunner.gnm1.ann1.KHU2SV Arachis hypogaea HOM05D006187 ORTHO05D007621 4.8e-101 371.3 209 81.3
arahy.Tifrunner.gnm1.ann1.YIAG1Z Arachis hypogaea HOM05D006187 ORTHO05D007621 4.8e-101 371.3 209 81.3
CiPaw.11G189300 Carya illinoinensis HOM05D006187 ORTHO05D007621 8.2e-101 370.5 209 83.7
RhsimUnG0250600 Rhododendron simsii HOM05D006187 ORTHO05D007621 8.2e-101 370.5 209 81.3
VMungo0647G0583 Vigna mungo HOM05D006187 ORTHO05D007621 8.2e-101 370.5 209 81.3
Haze_09689 Corylus avellana HOM05D006187 ORTHO05D007621 1.4e-100 369.8 209 81.3
PGR083G2749 Punica granatum HOM05D006187 ORTHO05D007621 1.4e-100 369.8 209 81.3
Ca_06320_v3 Cicer arietinum L. HOM05D006187 ORTHO05D007621 3.1e-100 368.6 209 81.3
Ca_30809_v3 Cicer arietinum L. HOM05D006187 ORTHO05D007621 3.1e-100 368.6 209 81.3
MSTRG.26280 Avicennia marina HOM05D006187 ORTHO05D007621 4.1e-100 368.2 209 80.9
Cfa020345 Carpinus fangiana HOM05D006187 ORTHO05D007621 4.1e-100 368.2 209 80.4
Lalb_Chr10g0106971 Lupinus albus HOM05D006187 ORTHO05D007621 4.1e-100 368.2 209 81.3
Potri.001G435500 Populus trichocarpa HOM05D006187 ORTHO05D007621 4.1e-100 368.2 209 81.8
Eucgr.F00764 Eucalyptus grandis HOM05D006187 ORTHO05D007621 5.3e-100 367.9 209 81.3
RcHm_v2.0_Chr5g0039431 Rosa chinensis HOM05D006187 ORTHO05D007621 5.3e-100 367.9 209 81.3
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 7.0e-100 367.5 209 81.3
THA.LOC104816937 Tarenaya hassleriana HOM05D006187 ORTHO05D007621 9.1e-100 367.1 209 80.9
TPR.G1184 Trifolium pratense HOM05D006187 ORTHO05D007621 9.1e-100 367.1 209 79.9
CsaV3_7G021800 Cucumis sativus L. HOM05D006187 ORTHO05D007621 1.2e-99 366.7 209 81.3
Cc05_g13690 Coffea canephora HOM05D006187 ORTHO05D007621 1.6e-99 366.3 209 81.3
Phvul.008G266900 Phaseolus vulgaris HOM05D006187 ORTHO05D007621 2.0e-99 365.9 209 79.9
Manes.15G071900 Manihot esculenta HOM05D006187 ORTHO05D007621 3.5e-99 365.2 209 81.3
Oeu005532.1 Olea europaea HOM05D006187 ORTHO05D007621 3.5e-99 365.2 209 80.4
CiPaw.12G129700 Carya illinoinensis HOM05D006187 ORTHO05D007621 4.5e-99 364.8 209 80.9
CAN.G337.132 Capsicum annuum HOM05D006187 ORTHO05D007621 5.9e-99 364.4 209 80.4
FvH4_3g22670 Fragaria vesca HOM05D006187 ORTHO05D007621 5.9e-99 364.4 209 81.3
TWI39G1048 Tripterygium wilfordii HOM05D006187 ORTHO05D007621 1.3e-98 363.2 209 80.9
Potri.011G139500 Populus trichocarpa HOM05D006187 ORTHO05D007621 2.2e-98 362.5 209 81.3
GSVIVG01037647001 Vitis vinifera HOM05D006187 ORTHO05D007621 5.0e-98 361.3 209 79.9
PSO210G0259 Papaver somniferum HOM05D006187 ORTHO05D007621 8.5e-98 360.5 209 78.0
Peaxi162Scf00964g00021 Petunia axillaris HOM05D006187 ORTHO05D007621 1.1e-97 360.1 209 79.4
Dinv40753 Davidia involucrata HOM05D006187 ORTHO05D007621 1.5e-97 359.8 209 79.9
HPP92_016292 Vanilla planifolia HOM05D006187 ORTHO05D007621 1.9e-97 359.4 208 79.3
PSO832G1277 Papaver somniferum HOM05D006187 ORTHO05D007621 7.2e-97 357.5 209 77.0
PGSC0003DMG400022319 Solanum tuberosum HOM05D006187 ORTHO05D007621 1.6e-96 356.3 209 78.9
ECA246G0646 Erigeron canadensis HOM05D006187 ORTHO05D007621 2.1e-96 355.9 209 78.5
Solyc07g064590.3 Solanum lycopersicum HOM05D006187 ORTHO05D007621 2.1e-96 355.9 209 78.5
Aa31LG10G3660 Aethionema arabicum HOM05D006187 ORTHO05D007621 2.7e-96 355.5 209 79.9
unitig_746.g26546 Utricularia gibba HOM05D006187 ORTHO05D007621 4.7e-96 354.8 209 78.0
CSS0042680 Camellia sinensis var. sinensis HOM05D006187 ORTHO05D007621 6.1e-96 354.4 209 78.9
FAN16G3112 Fragaria x ananassa HOM05D006187 ORTHO05D007621 1.0e-95 353.6 221 76.5
A06p02950 Brassica napus HOM05D006187 ORTHO05D007621 1.8e-95 352.8 209 78.0
CSS0049447 Camellia sinensis var. sinensis HOM05D006187 ORTHO05D007621 2.3e-95 352.4 209 78.0
Sopen07g032780 Solanum pennellii HOM05D006187 ORTHO05D007621 2.3e-95 352.4 209 77.5
Zm00001eb207490 Zea mays HOM05D006187 ORTHO05D007621 6.7e-95 350.9 209 78.0
Aqoxy1G03401 Aquilegia oxysepala HOM05D006187 ORTHO05D007621 8.8e-95 350.5 209 77.5
C06p05930 Brassica napus HOM05D006187 ORTHO05D007621 1.2e-94 350.1 209 78.0
CARHR040720 Cardamine hirsuta HOM05D006187 ORTHO05D007621 1.5e-94 349.7 209 78.0
BcaB07g33507 Brassica carinata HOM05D006187 ORTHO05D007621 2.6e-94 349.0 209 78.0
AT1G50670 Arabidopsis thaliana HOM05D006187 ORTHO05D007621 5.7e-94 347.8 209 77.5
FAN11G0395 Fragaria x ananassa HOM05D006187 ORTHO05D007621 5.7e-94 347.8 230 73.9
Migut.K00331 Erythranthe guttata HOM05D006187 ORTHO05D007621 7.5e-94 347.4 208 75.0
AL1G58340 Arabidopsis lyrata HOM05D006187 ORTHO05D007621 9.7e-94 347.1 209 77.0
SGA_v2.0_scaffold347G49550 Striga asiatica HOM05D006187 ORTHO05D007621 9.7e-94 347.1 209 76.6
BraA06t23501Z Brassica rapa HOM05D006187 ORTHO05D007621 1.3e-93 346.7 210 77.6
BcaC08g43245 Brassica carinata HOM05D006187 ORTHO05D007621 1.7e-93 346.3 209 77.5
Carub.0001s3971 Capsella rubella HOM05D006187 ORTHO05D007621 1.7e-93 346.3 209 77.0
FAN25G1478 Fragaria x ananassa HOM05D006187 ORTHO05D007621 2.8e-93 345.5 230 73.0
Thhalv10011780m.g Eutrema salsugineum HOM05D006187 ORTHO05D007621 3.7e-93 345.1 209 77.5
SalBow5G2755 Salvia bowleyana HOM05D006187 ORTHO05D007621 4.8e-93 344.7 225 72.0
Sp1g37520 Schrenkiella parvula HOM05D006187 ORTHO05D007621 4.8e-93 344.7 209 76.6
FAN21G2137 Fragaria x ananassa HOM05D006187 ORTHO05D007621 1.8e-92 342.8 240 70.4
ATR0794G016 Amborella trichopoda HOM05D006187 ORTHO05D007621 1.3e-90 336.7 209 74.2
Oeu062696.2 Olea europaea HOM05D006187 ORTHO05D007621 1.3e-90 336.7 243 67.1
Mapoly0105s0022 Marchantia polymorpha HOM05D006187 ORTHO05D007621 2.9e-90 335.5 209 73.2
Lalb_Chr17g0348481 Lupinus albus HOM05D006187 ORTHO05D007621 3.8e-90 335.1 190 81.1
Medtr5g092720 Medicago truncatula HOM05D006187 ORTHO05D007621 6.5e-90 334.3 190 80.0
MELO3C013167.2 Cucumis melo HOM05D006187 ORTHO05D007621 1.9e-89 332.8 189 81.0
ClCG09G010800 Citrullus lanatus HOM05D006187 ORTHO05D007621 2.5e-89 332.4 209 75.1
TWI38G1854 Tripterygium wilfordii HOM05D006187 ORTHO05D007621 3.2e-89 332.0 187 81.3
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 3.6e-88 328.6 209 74.2
CDE05G0514 Ceratophyllum demersum HOM05D006187 ORTHO05D007621 4.7e-88 328.2 209 73.7
SMO201G0052 Selaginella moellendorffii HOM05D006187 ORTHO05D007621 1.0e-87 327.0 208 71.2
Glyma.14G023700 Glycine max HOM05D006187 ORTHO05D007621 1.4e-87 326.6 185 80.5
Lsat_1_v5_gn_5_3960 Lactuca sativa HOM05D006187 ORTHO05D007621 2.3e-87 325.9 191 80.1
Glyma.02G291000 Glycine max HOM05D006187 ORTHO05D007621 3.0e-87 325.5 193 77.2
Pp3c26_11120 Physcomitrium patens HOM05D006187 ORTHO05D007621 3.4e-86 322.0 206 72.8
SEGI_20110 Sequoiadendron giganteum HOM05D006187 ORTHO05D007621 9.8e-86 320.5 206 71.4
HanXRQChr08g0233871 Helianthus annuus HOM05D006187 ORTHO05D007621 1.7e-85 319.7 187 78.6
Sabra11G0125500 Salix brachista HOM05D006187 ORTHO05D007621 3.7e-85 318.5 288 57.6
HanXRQChr05g0159371 Helianthus annuus HOM05D006187 ORTHO05D007621 5.4e-84 314.7 187 77.5
AagrBONN_evm.TU.Sc2ySwM_344.4367 Anthoceros agrestis HOM05D004720 ORTHO05D007621 1.4e-79 300.1 205 66.3
QL08p010320 Quercus lobata HOM05D006187 ORTHO05D007621 2.2e-77 292.7 185 76.2
Nitab4.5_0011129g0020 Nicotiana tabacum HOM05D006187 ORTHO05D007621 3.1e-76 288.9 209 67.5
vmacro09715 Vaccinium macrocarpon HOM05D006187 ORTHO05D007621 7.0e-76 287.7 165 80.0
BolC6t35706H Brassica oleracea HOM05D006187 ORTHO05D007621 6.1e-72 274.6 165 78.2
Lj1A872G52 Lonicera japonica HOM05D006187 ORTHO05D007621 4.0e-71 271.9 151 82.1
Cre09.g409050 Chlamydomonas reinhardtii HOM05D006187 ORTHO05D007621 8.3e-69 264.2 204 61.8
MCO07G461 Micromonas commoda HOM05D006187 ORTHO05D007621 1.9e-65 253.1 208 59.1
CBR_g54108 Chara braunii HOM05D006187 ORTHO05D007621 4.3e-65 251.9 168 70.2
SHI26611 Sapria himalayana HOM05D006187 ORTHO05D007621 1.2e-64 250.4 179 65.9
Hma1.2p1_0673F.1_g201350 Hydrangea macrophylla HOM05D006187 ORTHO05D007621 3.7e-61 238.8 209 59.8
PSO675G5262 Papaver somniferum HOM05D006187 ORTHO05D007621 1.9e-60 236.5 210 54.8
HPP92_016312 Vanilla planifolia HOM05D006187 ORTHO05D007621 1.9e-57 226.5 135 78.5
PRCOL_00006206 Prasinoderma coloniale HOM05D006187 ORTHO05D007621 1.2e-54 217.2 206 52.4
Cpa.g.sc97.3 Carica papaya HOM05D006187 ORTHO05D007621 2.5e-49 199.5 152 63.2
PSO541G4439 Papaver somniferum HOM05D006187 ORTHO05D007621 2.2e-45 186.4 206 47.1
Haze_26155 Corylus avellana HOM05D006187 ORTHO05D007621 2.1e-40 169.9 207 39.1
MBI18_g14476_MAGBIO Magnolia biondii HOM05D006187 ORTHO05D007621 2.0e-38 163.3 151 57.0
Prupe.4G233700 Prunus persica HOM05D006187 ORTHO05D007621 4.2e-36 155.6 142 58.5
Cre06.g274700 Chlamydomonas reinhardtii HOM05D006187 ORTHO05D007621 9.3e-36 154.5 171 43.3
Nitab4.5_0001913g0160 Nicotiana tabacum HOM05D006187 ORTHO05D007621 9.0e-31 137.9 84 73.8
PSO675G9324 Papaver somniferum HOM05D006187 ORTHO05D007621 1.2e-30 137.5 135 49.6
Os02g0164800 Oryza sativa ssp. japonica HOM05D006187 ORTHO05D007621 2.0e-30 136.7 84 73.8
HPP92_016311 Vanilla planifolia HOM05D006187 ORTHO05D007621 2.1e-27 126.7 74 75.7
Cfa025770 Carpinus fangiana HOM05D006187 ORTHO05D007621 2.3e-26 123.2 227 32.6
AUR62015776 Chenopodium quinoa HOM05D006187 ORTHO05D007621 5.5e-20 102.1 83 63.9
QL08p010315 Quercus lobata HOM05D006187 ORTHO05D007621 2.0e-14 83.6 43 81.4


User provided reference genes

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