Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g186010 Amaranthus hybridus HOM05D000004 ORTHO05D000002 1.9e-62 242.3 120 100.0
Ah.12g064200 Amaranthus hybridus HOM05D000004 ORTHO05D000002 2.7e-32 142.1 111 66.7
Ah.13g069810 Amaranthus hybridus HOM05D000004 ORTHO05D000002 7.5e-22 107.5 107 52.3
Ah.09g236580 Amaranthus hybridus HOM05D000004 ORTHO05D000002 2.0e-19 99.4 89 58.4
AUR62007521 Chenopodium quinoa HOM05D000004 ORTHO05D000002 1.0e-15 87.0 89 50.6
AUR62031087 Chenopodium quinoa HOM05D000004 ORTHO05D000002 3.0e-15 85.5 89 46.1
Ah.07g201970 Amaranthus hybridus HOM05D000004 ORTHO05D000002 4.0e-15 85.1 94 45.7
AUR62007645 Chenopodium quinoa HOM05D000004 ORTHO05D000002 2.6e-14 82.4 89 49.4
Ah.08g220400 Amaranthus hybridus HOM05D000004 ORTHO05D000002 5.7e-14 81.3 86 44.2
AUR62033910 Chenopodium quinoa HOM05D000004 ORTHO05D000002 1.3e-13 80.1 90 45.6
AUR62035839 Chenopodium quinoa HOM05D000380 ORTHO05D002061 1.3e-13 80.1 88 44.3
AUR62037042 Chenopodium quinoa HOM05D000004 ORTHO05D000002 3.7e-13 78.6 88 47.7
Ah.15g098410 Amaranthus hybridus HOM05D000004 ORTHO05D000002 1.4e-12 76.6 47 76.6
AUR62016413 Chenopodium quinoa HOM05D000004 ORTHO05D000002 2.4e-12 75.9 88 45.5
CAN.G517.6 Capsicum annuum HOM05D000446 ORTHO05D000002 1.2e-11 73.6 88 40.9
COL.COLO4_11298 Corchorus olitorius HOM05D000051 ORTHO05D000015 2.0e-11 72.8 61 57.4
Rhsim09G0107500 Rhododendron simsii HOM05D000004 ORTHO05D000002 2.0e-11 72.8 83 44.6
COL.COLO4_12314 Corchorus olitorius HOM05D001619 ORTHO05D001541 4.5e-11 71.6 61 55.7
Rhsim06G0107000 Rhododendron simsii HOM05D000004 ORTHO05D000002 5.9e-11 71.2 93 40.9
EL10Ac7g17357 Beta vulgaris HOM05D000004 ORTHO05D000002 7.7e-11 70.9 73 46.6
AUR62040097 Chenopodium quinoa HOM05D000004 ORTHO05D000002 1.0e-10 70.5 61 60.7
Rhsim01G0082200 Rhododendron simsii HOM05D000004 ORTHO05D000002 1.0e-10 70.5 91 39.6
CAN.G189.28 Capsicum annuum HOM05D000004 ORTHO05D000002 1.3e-10 70.1 88 39.8
Rhsim01G0082500 Rhododendron simsii HOM05D000004 ORTHO05D000002 2.3e-10 69.3 70 42.9
PSO541G0654 Papaver somniferum HOM05D000004 ORTHO05D000002 2.9e-10 68.9 84 44.0
PSO675G6456 Papaver somniferum HOM05D000004 ORTHO05D000002 2.9e-10 68.9 84 42.9
TPR.G22228 Trifolium pratense HOM05D000004 ORTHO05D000002 2.9e-10 68.9 88 36.4
Rhsim13G0234900 Rhododendron simsii HOM05D000004 ORTHO05D000002 3.8e-10 68.6 89 39.3
CSS0019420 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 5.0e-10 68.2 107 33.6
Nn1g04221 Nelumbo nucifera HOM05D000004 ORTHO05D000002 5.0e-10 68.2 90 40.0
PSO478G3096 Papaver somniferum HOM05D000004 ORTHO05D000002 5.0e-10 68.2 95 36.8
RhsimUnG0001700 Rhododendron simsii HOM05D000004 ORTHO05D000002 5.0e-10 68.2 83 43.4
Rhsim01G0051500 Rhododendron simsii HOM05D000004 ORTHO05D000002 6.6e-10 67.8 91 40.7
Rhsim01G0083200 Rhododendron simsii HOM05D000004 ORTHO05D000002 6.6e-10 67.8 91 38.5
AUR62041468 Chenopodium quinoa HOM05D000004 ORTHO05D000002 1.1e-09 67.0 75 45.3
Nn7g37314 Nelumbo nucifera HOM05D000004 ORTHO05D000002 1.1e-09 67.0 90 37.8
Rhsim06G0000800 Rhododendron simsii HOM05D000004 ORTHO05D000002 1.1e-09 67.0 105 40.0
TPR.G32498 Trifolium pratense HOM05D000004 ORTHO05D000002 1.5e-09 66.6 90 37.8
PSO832G4448 Papaver somniferum HOM05D000004 ORTHO05D000002 1.9e-09 66.2 87 39.1
Rhsim11G0093400 Rhododendron simsii HOM05D000004 ORTHO05D000002 1.9e-09 66.2 106 37.7
COL.COLO4_23642 Corchorus olitorius HOM05D000004 ORTHO05D000002 2.5e-09 65.9 61 57.4
Rhsim09G0000300 Rhododendron simsii HOM05D000004 ORTHO05D000002 2.5e-09 65.9 68 52.9
PSO210G2668 Papaver somniferum HOM05D000004 ORTHO05D000002 3.3e-09 65.5 87 39.1
AUR62027767 Chenopodium quinoa HOM05D000004 ORTHO05D000002 4.2e-09 65.1 86 39.5
Lalb_Chr01g0016101 Lupinus albus HOM05D000004 ORTHO05D000002 4.2e-09 65.1 103 36.9
Rhsim02G0149500 Rhododendron simsii HOM05D000004 ORTHO05D000002 4.2e-09 65.1 117 37.6
CSS0031064 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 5.5e-09 64.7 49 55.1
AUR62038964 Chenopodium quinoa HOM05D000004 ORTHO05D000002 5.5e-09 64.7 69 49.3
PSO063G6334 Papaver somniferum HOM05D000004 ORTHO05D000002 5.5e-09 64.7 92 41.3
AUR62034871 Chenopodium quinoa HOM05D000004 ORTHO05D000002 7.2e-09 64.3 86 38.4
Rhsim12G0205800 Rhododendron simsii HOM05D000004 ORTHO05D000002 7.2e-09 64.3 66 48.5
Rhsim13G0092800 Rhododendron simsii HOM05D000004 ORTHO05D000002 7.2e-09 64.3 66 48.5
AUR62004749 Chenopodium quinoa HOM05D000004 ORTHO05D000002 1.2e-08 63.5 87 39.1
TPR.G28616 Trifolium pratense HOM05D000004 ORTHO05D000002 1.2e-08 63.5 86 33.7
COL.COLO4_35781 Corchorus olitorius HOM05D000004 ORTHO05D000002 1.6e-08 63.2 52 51.9
PSO170G1566 Papaver somniferum HOM05D000004 ORTHO05D000002 1.6e-08 63.2 99 37.4
RhsimUnG0031100 Rhododendron simsii HOM05D000004 ORTHO05D000002 2.1e-08 62.8 106 36.8
Ah.10g029770 Amaranthus hybridus HOM05D000004 ORTHO05D000002 2.8e-08 62.4 58 53.4
CSS0010655 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 2.8e-08 62.4 81 44.4
PSO384G1149 Papaver somniferum HOM05D000004 ORTHO05D000002 2.8e-08 62.4 92 41.3
PSO384G4771 Papaver somniferum HOM05D000004 ORTHO05D000002 2.8e-08 62.4 83 43.4
PSO493G0015 Papaver somniferum HOM05D000004 ORTHO05D000002 2.8e-08 62.4 87 36.8
AUR62002516 Chenopodium quinoa HOM05D000004 ORTHO05D000002 3.6e-08 62.0 89 37.1
COL.COLO4_08211 Corchorus olitorius HOM05D000004 ORTHO05D000002 3.6e-08 62.0 49 53.1
PSO017G2829 Papaver somniferum HOM05D000004 ORTHO05D000002 3.6e-08 62.0 85 42.4
PSO017G1833 Papaver somniferum HOM05D000004 ORTHO05D000002 4.7e-08 61.6 81 40.7
AUR62006479 Chenopodium quinoa HOM05D000004 ORTHO05D000002 6.1e-08 61.2 99 36.4
PSO832G2080 Papaver somniferum HOM05D000004 ORTHO05D000002 6.1e-08 61.2 73 43.8
AUR62043028 Chenopodium quinoa HOM05D000004 ORTHO05D000002 8.0e-08 60.8 86 37.2
COL.COLO4_37407 Corchorus olitorius HOM05D000004 ORTHO05D000002 8.0e-08 60.8 46 56.5
Hma1.2p1_0812F.1_g222280 Hydrangea macrophylla HOM05D000004 ORTHO05D000002 8.0e-08 60.8 89 37.1
Atru.chr6.164 Acer truncatum HOM05D000544 ORTHO05D000002 1.0e-07 60.5 39 64.1
CAN.G1286.10 Capsicum annuum HOM05D000021 ORTHO05D000010 1.0e-07 60.5 108 31.5
RcHm_v2.0_Chr5g0021481 Rosa chinensis HOM05D000004 ORTHO05D000002 1.0e-07 60.5 84 33.3
AUR62042688 Chenopodium quinoa HOM05D000004 ORTHO05D000002 1.4e-07 60.1 93 34.4
PSO675G7897 Papaver somniferum HOM05D000004 ORTHO05D000002 1.4e-07 60.1 87 37.9
PSO731G0132 Papaver somniferum HOM05D000004 ORTHO05D000002 1.4e-07 60.1 88 39.8
CSS0005910 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.8e-07 59.7 79 36.7
AUR62040888 Chenopodium quinoa HOM05D000004 ORTHO05D000002 1.8e-07 59.7 86 38.4
Lj2C174T26 Lonicera japonica HOM05D000004 ORTHO05D000002 1.8e-07 59.7 96 39.6
PSO017G6585 Papaver somniferum HOM05D000004 ORTHO05D000002 1.8e-07 59.7 67 44.8
PSO832G2085 Papaver somniferum HOM05D000004 ORTHO05D000002 1.8e-07 59.7 99 39.4
COL.COLO4_30010 Corchorus olitorius HOM05D000004 ORTHO05D000002 2.3e-07 59.3 84 38.1
COL.COLO4_37053 Corchorus olitorius HOM05D000004 ORTHO05D000002 2.3e-07 59.3 46 56.5
ECA248G2380 Erigeron canadensis HOM05D000004 ORTHO05D000002 3.0e-07 58.9 65 44.6
PSO063G6712 Papaver somniferum HOM05D000004 ORTHO05D000002 3.0e-07 58.9 80 40.0
PSO675G0491 Papaver somniferum HOM05D000004 ORTHO05D000002 3.0e-07 58.9 107 33.6
QL93p0249_0002 Quercus lobata HOM05D000004 ORTHO05D000002 3.0e-07 58.9 60 45.0
Rhsim07G0137500 Rhododendron simsii HOM05D000004 ORTHO05D000002 3.0e-07 58.9 64 45.3
CSS0034428 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 4.0e-07 58.5 65 52.3
Nn2g15711 Nelumbo nucifera HOM05D000004 ORTHO05D000002 4.0e-07 58.5 75 36.0
Nn2g14341 Nelumbo nucifera HOM05D000004 ORTHO05D000002 5.2e-07 58.2 75 36.0
CAN.G430.5 Capsicum annuum HOM05D000004 ORTHO05D000002 6.8e-07 57.8 44 54.5
PSO017G2872 Papaver somniferum HOM05D000004 ORTHO05D000002 6.8e-07 57.8 104 33.7
PSO339G6040 Papaver somniferum HOM05D000004 ORTHO05D000002 6.8e-07 57.8 68 44.1
PSO478G0249 Papaver somniferum HOM05D000004 ORTHO05D000002 6.8e-07 57.8 85 38.8
PSO832G3207 Papaver somniferum HOM05D000004 ORTHO05D000002 6.8e-07 57.8 97 36.1
AUR62043001 Chenopodium quinoa HOM05D000004 ORTHO05D000002 8.9e-07 57.4 70 41.4
PSO170G5011 Papaver somniferum HOM05D000004 ORTHO05D000002 8.9e-07 57.4 78 41.0
PSO478G1777 Papaver somniferum HOM05D000004 ORTHO05D000002 8.9e-07 57.4 104 32.7
Rhsim01G0093500 Rhododendron simsii HOM05D000004 ORTHO05D000002 8.9e-07 57.4 78 39.7
PSO017G2622 Papaver somniferum HOM05D000004 ORTHO05D000002 1.2e-06 57.0 78 41.0
PSO170G2489 Papaver somniferum HOM05D000004 ORTHO05D000002 1.2e-06 57.0 41 56.1
RcHm_v2.0_Chr4g0397431 Rosa chinensis HOM05D000004 ORTHO05D000002 1.2e-06 57.0 105 26.7
Sopen02g018880 Solanum pennellii HOM05D000004 ORTHO05D000048 1.2e-06 57.0 86 37.2
Sopen03g015220 Solanum pennellii HOM05D000004 ORTHO05D000002 1.2e-06 57.0 86 37.2
AUR62031752 Chenopodium quinoa HOM05D000004 ORTHO05D000002 1.5e-06 56.6 64 40.6
ECA248G2061 Erigeron canadensis HOM05D000004 ORTHO05D000002 1.5e-06 56.6 110 33.6
PSO675G8328 Papaver somniferum HOM05D000004 ORTHO05D000002 1.5e-06 56.6 68 47.1
Sopen07g004430 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-06 56.6 101 33.7
PSO339G3572 Papaver somniferum HOM05D000004 ORTHO05D000002 2.0e-06 56.2 76 42.1
QL10p040115 Quercus lobata HOM05D000004 ORTHO05D000002 2.0e-06 56.2 90 38.9
Hma1.2p1_0078F.1_g040400 Hydrangea macrophylla HOM05D000004 ORTHO05D000002 2.6e-06 55.8 96 36.5
PSO063G4010 Papaver somniferum HOM05D000004 ORTHO05D000002 2.6e-06 55.8 75 42.7
PSO675G4898 Papaver somniferum HOM05D000004 ORTHO05D000002 2.6e-06 55.8 84 34.5
Sopen05g011810 Solanum pennellii HOM05D000004 ORTHO05D000002 2.6e-06 55.8 93 36.6
AUR62041119 Chenopodium quinoa HOM05D000004 ORTHO05D000002 3.4e-06 55.5 46 52.2
ECA247G0045 Erigeron canadensis HOM05D000004 ORTHO05D000002 3.4e-06 55.5 96 37.5
Os04g0191000 Oryza sativa ssp. japonica HOM05D000004 ORTHO05D000002 3.4e-06 55.5 50 48.0
PSO198G0084 Papaver somniferum HOM05D000004 ORTHO05D000002 3.4e-06 55.5 81 39.5
Rhsim13G0093200 Rhododendron simsii HOM05D000004 ORTHO05D000002 3.4e-06 55.5 85 41.2
Sopen07g005380 Solanum pennellii HOM05D000004 ORTHO05D000048 3.4e-06 55.5 101 33.7
AUR62041979 Chenopodium quinoa HOM05D000004 ORTHO05D000002 4.4e-06 55.1 47 51.1
Lj4C52G9 Lonicera japonica HOM05D000004 ORTHO05D000002 4.4e-06 55.1 52 51.9
PSO339G6459 Papaver somniferum HOM05D000004 ORTHO05D000002 4.4e-06 55.1 78 41.0
Dinv12812 Davidia involucrata HOM05D000004 ORTHO05D000002 5.7e-06 54.7 48 47.9
Dinv29024 Davidia involucrata HOM05D000004 ORTHO05D000002 5.7e-06 54.7 48 47.9
Hma1.2p1_0445F.1_g154130 Hydrangea macrophylla HOM05D000004 ORTHO05D000002 5.7e-06 54.7 60 40.0
PSO063G0403 Papaver somniferum HOM05D000004 ORTHO05D000002 5.7e-06 54.7 61 39.3
RcHm_v2.0_Chr1g0339801 Rosa chinensis HOM05D000004 ORTHO05D000002 5.7e-06 54.7 118 32.2
CAN.G1148.2 Capsicum annuum HOM05D000004 ORTHO05D000002 7.5e-06 54.3 90 35.6
CAN.G1408.1 Capsicum annuum HOM05D000004 ORTHO05D000002 7.5e-06 54.3 115 27.0
AUR62011261 Chenopodium quinoa HOM05D000004 ORTHO05D000002 7.5e-06 54.3 67 46.3
ECA236G4933 Erigeron canadensis HOM05D000004 ORTHO05D000002 7.5e-06 54.3 116 32.8
PSO170G1160 Papaver somniferum HOM05D000004 ORTHO05D000002 7.5e-06 54.3 50 48.0
TWI36G1188 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 7.5e-06 54.3 62 38.7
PSO063G2816 Papaver somniferum HOM05D000004 ORTHO05D000002 9.8e-06 53.9 73 41.1
PSO782G3890 Papaver somniferum HOM05D000004 ORTHO05D000002 9.8e-06 53.9 49 46.9


User provided reference genes

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