Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g182950 Amaranthus hybridus HOM05D006362 ORTHO05D008295 0.0e+00 1085.1 574 100.0
AUR62020525 Chenopodium quinoa HOM05D006362 ORTHO05D008295 4.5e-266 921.0 558 85.7
EL10Ac4g07932 Beta vulgaris HOM05D006362 ORTHO05D008295 9.1e-259 896.7 560 83.0
AUR62015672 Chenopodium quinoa HOM05D006362 ORTHO05D008295 4.7e-255 884.4 585 80.0
Sc14g0006480 Simmondsia chinensis HOM05D006362 ORTHO05D008295 1.3e-244 849.7 575 75.8
Thecc.07G046200 Theobroma cacao HOM05D006362 ORTHO05D008295 7.5e-237 823.9 580 72.6
Potri.011G135800 Populus trichocarpa HOM05D006362 ORTHO05D008295 1.3e-236 823.2 578 74.0
Gorai.002G084800 Gossypium raimondii HOM05D006362 ORTHO05D008295 1.7e-236 822.8 576 72.7
GSVIVG01001989001 Vitis vinifera HOM05D006362 ORTHO05D008295 2.2e-236 822.4 576 73.4
Duzib268G0905 Durio zibethinus HOM05D006362 ORTHO05D008295 1.4e-235 819.7 579 71.7
Gohir.A01G076501 Gossypium hirsutum HOM05D006362 ORTHO05D008295 2.4e-235 818.9 576 72.4
QL08p012554 Quercus lobata HOM05D006362 ORTHO05D008295 7.0e-235 817.4 568 73.8
TWI38G1299 Tripterygium wilfordii HOM05D006362 ORTHO05D008295 4.5e-234 814.7 573 73.5
TAR626G1624 Trochodendron aralioides HOM05D006362 ORTHO05D008295 1.0e-233 813.5 578 73.2
Manes.15G074800 Manihot esculenta HOM05D006362 ORTHO05D008295 6.5e-233 810.8 579 72.4
Prupe.4G206200 Prunus persica HOM05D006362 ORTHO05D008295 4.2e-232 808.1 559 75.5
Gohir.D01G064000 Gossypium hirsutum HOM05D006362 ORTHO05D008295 7.2e-232 807.4 576 71.9
THA.LOC104818092 Tarenaya hassleriana HOM05D006362 ORTHO05D008295 2.1e-231 805.8 576 71.7
MD03G1209000 Malus domestica HOM05D006362 ORTHO05D008295 1.4e-230 803.1 572 73.1
Ciclev10007871m.g Citrus clementina HOM05D006362 ORTHO05D008295 8.8e-230 800.4 578 71.6
Dinv40729 Davidia involucrata HOM05D006362 ORTHO05D008295 2.0e-229 799.3 574 71.4
CARHR090140 Cardamine hirsuta HOM05D006362 ORTHO05D008295 3.4e-229 798.5 572 71.3
FvH4_4g07170 Fragaria vesca HOM05D006362 ORTHO05D008295 3.4e-229 798.5 581 72.3
Eucgr.F03442 Eucalyptus grandis HOM05D006362 ORTHO05D008295 4.4e-229 798.1 579 71.5
Atru.chr2.3247 Acer truncatum HOM05D006362 ORTHO05D008295 5.7e-229 797.7 578 70.8
CsaV3_1G044730 Cucumis sativus L. HOM05D006362 ORTHO05D008295 9.8e-229 797.0 578 70.2
Sed0025840 Sechium edule HOM05D006362 ORTHO05D008295 1.3e-228 796.6 578 69.6
AT3G15160 Arabidopsis thaliana HOM05D006362 ORTHO05D008295 2.8e-228 795.4 574 71.1
CANSAT11G0353 Cannabis sativa HOM05D006362 ORTHO05D008295 2.8e-228 795.4 573 71.7
FAN12G0341 Fragaria x ananassa HOM05D006362 ORTHO05D008295 3.7e-228 795.0 581 72.1
AL3G27550 Arabidopsis lyrata HOM05D006362 ORTHO05D008295 4.9e-228 794.7 574 71.6
RcHm_v2.0_Chr4g0399351 Rosa chinensis HOM05D006362 ORTHO05D008295 4.9e-228 794.7 582 71.8
BraA03t13067Z Brassica rapa HOM05D006362 ORTHO05D008295 6.3e-228 794.3 574 71.1
Carub.0003s1481 Capsella rubella HOM05D006362 ORTHO05D008295 6.3e-228 794.3 574 71.4
Aqoxy1G03661 Aquilegia oxysepala HOM05D006362 ORTHO05D008295 8.3e-228 793.9 572 71.2
C03p47540 Brassica napus HOM05D006362 ORTHO05D008295 1.8e-227 792.7 574 71.3
BolC3t17030H Brassica oleracea HOM05D006362 ORTHO05D008295 2.4e-227 792.3 574 71.3
A03p39180 Brassica napus HOM05D006362 ORTHO05D008295 5.4e-227 791.2 574 71.1
arahy.Tifrunner.gnm1.ann1.Z96I2W Arachis hypogaea HOM05D006362 ORTHO05D008295 1.2e-226 790.0 573 70.5
MELO3C018085.2 Cucumis melo HOM05D006362 ORTHO05D008295 1.2e-226 790.0 578 69.4
Thhalv10020417m.g Eutrema salsugineum HOM05D006362 ORTHO05D008295 1.2e-226 790.0 574 70.9
Cfa020397 Carpinus fangiana HOM05D006362 ORTHO05D008295 2.0e-226 789.3 560 72.3
Hma1.2p1_1344F.1_g277040 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 2.0e-226 789.3 564 72.0
Sp3g13370 Schrenkiella parvula HOM05D006362 ORTHO05D008295 7.7e-226 787.3 574 71.3
FAN22G0212 Fragaria x ananassa HOM05D006362 ORTHO05D008295 1.5e-224 783.1 590 70.5
Solyc10g006410.3 Solanum lycopersicum HOM05D006362 ORTHO05D008295 4.3e-224 781.6 572 69.8
Aa31LG8G2360 Aethionema arabicum HOM05D006362 ORTHO05D008295 5.6e-224 781.2 574 69.3
TPR.G25875 Trifolium pratense HOM05D006362 ORTHO05D008295 5.6e-224 781.2 578 69.4
Lj3g0015245 Lotus japonicus HOM05D006362 ORTHO05D008295 2.1e-223 779.2 573 70.5
Lalb_Chr03g0030071 Lupinus albus HOM05D006362 ORTHO05D008295 2.8e-223 778.9 576 68.8
Sopen10g002360 Solanum pennellii HOM05D006362 ORTHO05D008295 3.6e-223 778.5 572 69.4
Glyma.06G271800 Glycine max HOM05D006362 ORTHO05D008295 1.0e-222 776.9 576 70.3
CAN.G1781.12 Capsicum annuum HOM05D006362 ORTHO05D008295 1.8e-222 776.2 570 69.1
Nitab4.5_0002342g0020 Nicotiana tabacum HOM05D006362 ORTHO05D008295 1.8e-222 776.2 576 69.3
Psat7g162880 Pisum sativum HOM05D006362 ORTHO05D008295 1.8e-222 776.2 578 69.2
Cc05_g13400 Coffea canephora HOM05D006362 ORTHO05D008295 2.3e-222 775.8 573 69.3
Medtr4g081050 Medicago truncatula HOM05D006362 ORTHO05D008295 4.4e-221 771.5 578 68.9
PSO832G4364 Papaver somniferum HOM05D006362 ORTHO05D008295 2.9e-220 768.8 576 68.8
Nn1g07069 Nelumbo nucifera HOM05D006362 ORTHO05D008295 6.4e-220 767.7 554 71.1
arahy.Tifrunner.gnm1.ann1.GJJ2CM Arachis hypogaea HOM05D006362 ORTHO05D008295 2.4e-219 765.8 569 69.4
Hund23291 Selenicereus undatus HOM05D006362 ORTHO05D008295 3.2e-219 765.4 512 78.7
BcaC01g03890 Brassica carinata HOM05D006362 ORTHO05D008295 4.1e-219 765.0 596 67.4
DCAR_022536 Daucus carota HOM05D006362 ORTHO05D008295 1.2e-218 763.5 595 67.2
Oeu021406.2 Olea europaea HOM05D006362 ORTHO05D008295 1.2e-218 763.5 577 66.6
PGR031G2573 Punica granatum HOM05D006362 ORTHO05D008295 2.0e-218 762.7 558 71.9
Haze_09637 Corylus avellana HOM05D006362 ORTHO05D008295 3.9e-217 758.4 635 64.6
HanXRQChr13g0407741 Helianthus annuus HOM05D006362 ORTHO05D008295 1.2e-215 753.4 569 68.2
Ca_18860_v3 Cicer arietinum L. HOM05D006362 ORTHO05D008295 2.8e-215 752.3 562 68.7
Gorai.009G425700 Gossypium raimondii HOM05D006362 ORTHO05D008295 2.3e-214 749.2 580 67.1
Phvul.011G136800 Phaseolus vulgaris HOM05D006362 ORTHO05D008295 2.3e-214 749.2 557 70.0
ECA240G1610 Erigeron canadensis HOM05D006362 ORTHO05D008295 2.0e-213 746.1 571 67.4
ATR0697G203 Amborella trichopoda HOM05D006362 ORTHO05D008295 2.6e-213 745.7 571 66.9
Peaxi162Scf00387g00613 Petunia axillaris HOM05D006362 ORTHO05D008295 5.4e-211 738.0 570 66.8
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 7.0e-211 737.6 577 67.8
HPP92_009387 Vanilla planifolia HOM05D006362 ORTHO05D008295 3.5e-210 735.3 571 66.4
Rhsim06G0213400 Rhododendron simsii HOM05D006362 ORTHO05D008295 1.2e-207 726.9 623 63.2
Gohir.A04G020300 Gossypium hirsutum HOM05D006362 ORTHO05D008295 1.9e-203 713.0 576 65.6
CDE05G0917 Ceratophyllum demersum HOM05D006362 ORTHO05D008295 3.2e-203 712.2 564 65.1
SGA_v2.0_scaffold80G25930 Striga asiatica HOM05D006362 ORTHO05D008295 3.2e-203 712.2 579 63.2
Os04g0626900 Oryza sativa ssp. japonica HOM05D006362 ORTHO05D008295 2.3e-201 706.1 579 62.7
ClCG05G014560 Citrullus lanatus HOM05D006362 ORTHO05D008295 5.6e-200 701.4 599 62.6
Sabra11G0122000 Salix brachista HOM05D006362 ORTHO05D008295 2.1e-199 699.5 614 64.2
Lj1C868T5 Lonicera japonica HOM05D006362 ORTHO05D008295 1.1e-198 697.2 548 67.5
Nitab4.5_0002229g0190 Nicotiana tabacum HOM05D006362 ORTHO05D008295 1.4e-195 686.8 597 62.1
FAN17G1244 Fragaria x ananassa HOM05D006362 ORTHO05D008295 7.1e-195 684.5 590 64.7
Lsat_1_v5_gn_5_81640 Lactuca sativa HOM05D006362 ORTHO05D008295 3.5e-194 682.2 559 64.6
Migut.M01793 Erythranthe guttata HOM05D006362 ORTHO05D008295 1.0e-193 680.6 573 61.1
CiPaw.11G185900 Carya illinoinensis HOM05D006362 ORTHO05D008295 3.4e-181 639.0 430 75.8
Mapoly0021s0009 Marchantia polymorpha HOM05D006362 ORTHO05D008295 4.8e-167 592.0 579 54.7
Gohir.D05G366200 Gossypium hirsutum HOM05D006362 ORTHO05D008295 6.2e-167 591.7 436 69.0
Pp3c24_12510 Physcomitrium patens HOM05D006362 ORTHO05D008295 1.1e-160 570.9 574 52.8
vmacro11753 Vaccinium macrocarpon HOM05D006362 ORTHO05D008295 2.2e-156 556.6 700 46.6
SMO115G0345 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 3.6e-154 549.3 570 53.5
AagrBONN_evm.TU.Sc2ySwM_117.2426 Anthoceros agrestis HOM05D006362 ORTHO05D008295 1.4e-142 510.8 571 49.6
Pp3c23_6050 Physcomitrium patens HOM05D006362 ORTHO05D008295 9.7e-136 488.0 561 49.7
BolC3t17019H Brassica oleracea HOM05D006362 ORTHO05D008295 2.8e-119 433.3 321 69.8
PGSC0003DMG403014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 2.6e-104 383.6 282 69.5
HPP92_009392 Vanilla planifolia HOM05D006362 ORTHO05D008295 1.7e-103 380.9 275 68.0
Zm00001eb070060 Zea mays HOM05D006362 ORTHO05D008295 7.8e-93 345.5 307 57.7
CSS0013960 Camellia sinensis var. sinensis HOM05D006362 ORTHO05D008295 5.6e-83 312.8 221 69.2
PGSC0003DMG402014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 4.3e-67 260.0 195 64.6
CBR_g57499 Chara braunii HOM05D006362 ORTHO05D008295 2.9e-47 194.1 240 42.5
SEGI_18975 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 4.2e-46 190.3 176 59.7
Rhsim12G0205700 Rhododendron simsii HOM05D006362 ORTHO05D008295 3.0e-44 184.1 298 43.3
Gorai.002G084600 Gossypium raimondii HOM05D006362 ORTHO05D008295 6.9e-41 172.9 120 70.0
Gohir.D01G063866 Gossypium hirsutum HOM05D006362 ORTHO05D008295 4.2e-38 163.7 120 66.7
SHI31860 Sapria himalayana HOM05D006362 ORTHO05D008295 1.8e-36 158.3 147 54.4
Cpa.g.sc131.92 Carica papaya HOM05D006362 ORTHO05D008295 5.7e-35 153.3 116 69.0
SEGI_13710 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 6.9e-33 146.4 131 55.7
VMungo0251G2436 Vigna mungo HOM05D006362 ORTHO05D008295 5.1e-28 130.2 115 60.0
Hma1.2p1_1609F.1_g293480 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 6.3e-26 123.2 113 60.2
SMO347G0562 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 2.1e-21 108.2 189 38.6
HPP92_009393 Vanilla planifolia HOM05D006362 ORTHO05D008295 6.1e-21 106.7 95 60.0
SMO228G0126 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 2.2e-18 98.2 201 36.8
CBR_g57501 Chara braunii HOM05D006362 ORTHO05D008295 8.2e-18 96.3 119 45.4
HanXRQChr16g0507081 Helianthus annuus HOM05D006362 ORTHO05D008295 8.5e-15 86.3 82 54.9
SMO111G0176 Selaginella moellendorffii HOM05D013632 ORTHO05D008295 1.1e-14 85.9 96 46.9
SMO167G0061 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 2.7e-13 81.3 151 39.1
Cc02_g13940 Coffea canephora HOM05D006362 ORTHO05D008295 1.2e-11 75.9 55 76.4
SMO122G0015 Selaginella moellendorffii HOM05D006362 ORTHO05D374567 9.7e-11 72.8 96 41.7
BcaB04g20946 Brassica carinata HOM05D006362 ORTHO05D008295 2.2e-10 71.6 45 73.3
SMO009G0006 Selaginella moellendorffii HOM05D013632 ORTHO05D379378 3.8e-07 60.8 152 31.6
SMO118G0508 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 5.0e-07 60.5 208 28.4
SMO014G0021 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.5e-06 58.9 174 31.6
SMO144G0005 Selaginella moellendorffii HOM05D013632 ORTHO05D378182 1.9e-06 58.5 75 40.0
Cpa.g.sc131.91 Carica papaya HOM05D006362 ORTHO05D116658 2.5e-06 58.2 37 67.6


User provided reference genes

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