Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.06g182920 Amaranthus hybridus HOM05D005249 ORTHO05D006457 8.1e-94 347.1 173 100.0
AUR62015702 Chenopodium quinoa HOM05D005249 ORTHO05D006457 5.4e-74 281.2 175 80.6
AUR62020502 Chenopodium quinoa HOM05D005249 ORTHO05D006457 1.6e-73 279.6 175 80.6
EL10Ac4g07899 Beta vulgaris HOM05D005249 ORTHO05D006457 7.6e-68 260.8 175 78.9
COL.COLO4_09631 Corchorus olitorius HOM05D005249 ORTHO05D006457 1.4e-58 229.9 178 68.0
Gohir.A01G077300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 1.2e-57 226.9 179 67.0
Gohir.D01G064800 Gossypium hirsutum HOM05D005249 ORTHO05D006457 2.7e-57 225.7 179 66.5
Gorai.002G085700 Gossypium raimondii HOM05D005249 ORTHO05D006457 2.7e-57 225.7 179 66.5
Lj6g0004310 Lotus japonicus HOM05D005249 ORTHO05D006457 2.7e-57 225.7 179 68.2
arahy.Tifrunner.gnm1.ann1.I048YJ Arachis hypogaea HOM05D005249 ORTHO05D006457 4.6e-57 224.9 180 67.8
CsaV3_3G005280 Cucumis sativus L. HOM05D005249 ORTHO05D006457 7.9e-57 224.2 176 66.5
arahy.Tifrunner.gnm1.ann1.EK5LIC Arachis hypogaea HOM05D005249 ORTHO05D006457 1.0e-56 223.8 184 66.3
GSVIVG01002001001 Vitis vinifera HOM05D005249 ORTHO05D006457 1.3e-56 223.4 179 67.0
ClCG10G005560 Citrullus lanatus HOM05D005249 ORTHO05D006457 1.8e-56 223.0 176 65.9
MELO3C025397.2 Cucumis melo HOM05D005249 ORTHO05D006457 2.3e-56 222.6 176 65.9
QL08p011891 Quercus lobata HOM05D005249 ORTHO05D006457 2.3e-56 222.6 179 68.2
QL08p012062 Quercus lobata HOM05D005249 ORTHO05D006457 2.3e-56 222.6 179 68.2
Ca_08298_v3 Cicer arietinum L. HOM05D005249 ORTHO05D006457 3.9e-56 221.9 182 67.6
VMungo0540G0590 Vigna mungo HOM05D005249 ORTHO05D006457 5.1e-56 221.5 181 65.7
Peaxi162Scf00387g00046 Petunia axillaris HOM05D005249 ORTHO05D006457 6.7e-56 221.1 181 69.1
Sed0007548 Sechium edule HOM05D005249 ORTHO05D006457 6.7e-56 221.1 177 68.4
PGR031G1044 Punica granatum HOM05D005249 ORTHO05D006457 1.1e-55 220.3 179 65.9
Lalb_Chr15g0080371 Lupinus albus HOM05D005249 ORTHO05D006457 1.9e-55 219.5 180 68.3
Glyma.18G102100 Glycine max HOM05D005249 ORTHO05D006457 2.5e-55 219.2 181 64.6
Manes.15G073900 Manihot esculenta HOM05D005249 ORTHO05D006457 2.5e-55 219.2 180 67.8
Thecc.07G044000 Theobroma cacao HOM05D005249 ORTHO05D006457 2.5e-55 219.2 179 63.7
Eucgr.F03446 Eucalyptus grandis HOM05D005249 ORTHO05D006457 3.3e-55 218.8 185 65.9
Lj8A167T50 Lonicera japonica HOM05D005249 ORTHO05D006457 4.3e-55 218.4 184 65.2
Medtr3g019320 Medicago truncatula HOM05D005249 ORTHO05D006457 4.3e-55 218.4 184 65.8
Duzib213G0461 Durio zibethinus HOM05D005249 ORTHO05D006457 5.7e-55 218.0 179 63.7
Nitab4.5_0005048g0030 Nicotiana tabacum HOM05D005249 ORTHO05D006457 7.4e-55 217.6 185 67.6
PGSC0003DMG400014394 Solanum tuberosum HOM05D005249 ORTHO05D006457 1.6e-54 216.5 179 65.9
TAR626G0063 Trochodendron aralioides HOM05D005249 ORTHO05D006457 2.8e-54 215.7 183 66.1
Haze_09646 Corylus avellana HOM05D005249 ORTHO05D006457 3.7e-54 215.3 179 64.8
Sc16g0006280 Simmondsia chinensis HOM05D005249 ORTHO05D006457 4.8e-54 214.9 183 65.0
Solyc10g006370.3 Solanum lycopersicum HOM05D005249 ORTHO05D006457 4.8e-54 214.9 180 65.6
Cfa020386 Carpinus fangiana HOM05D005249 ORTHO05D006457 6.2e-54 214.5 179 64.8
Gohir.D05G366500 Gossypium hirsutum HOM05D005249 ORTHO05D006457 6.2e-54 214.5 179 62.6
Potri.001G420900 Populus trichocarpa HOM05D005249 ORTHO05D006457 6.2e-54 214.5 179 64.2
THA.LOC104798778 Tarenaya hassleriana HOM05D005249 ORTHO05D006457 8.2e-54 214.2 184 64.1
Psat5g216840 Pisum sativum HOM05D005249 ORTHO05D006457 1.1e-53 213.8 178 64.0
CiPaw.11G187100 Carya illinoinensis HOM05D005249 ORTHO05D006457 1.4e-53 213.4 179 66.5
Cpa.g.sc97.36 Carica papaya HOM05D005249 ORTHO05D006457 1.8e-53 213.0 169 66.9
Sabra16G0285800 Salix brachista HOM05D005249 ORTHO05D006457 1.8e-53 213.0 178 64.0
Manes.03G127000 Manihot esculenta HOM05D005249 ORTHO05D006457 2.4e-53 212.6 180 65.0
Glyma.08G312800 Glycine max HOM05D005249 ORTHO05D006457 3.1e-53 212.2 185 63.8
FvH4_3g22190 Fragaria vesca HOM05D005249 ORTHO05D006457 4.1e-53 211.8 181 66.3
Dinv22281 Davidia involucrata HOM05D005249 ORTHO05D006457 9.0e-53 210.7 185 62.7
Hma1.2p1_1271F.1_g271820 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 9.0e-53 210.7 186 61.8
Hma1.2p1_1609F.1_g293423 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 9.0e-53 210.7 186 61.8
CANSAT21G2135 Cannabis sativa HOM05D005249 ORTHO05D006457 1.2e-52 210.3 179 64.2
Phvul.006G038600 Phaseolus vulgaris HOM05D005249 ORTHO05D006457 1.2e-52 210.3 178 62.9
TAR624G0120 Trochodendron aralioides HOM05D005249 ORTHO05D006457 1.2e-52 210.3 181 65.7
CAN.G1781.9 Capsicum annuum HOM05D005249 ORTHO05D006457 5.8e-52 208.0 182 64.8
Ciclev10009689m.g Citrus clementina HOM05D005249 ORTHO05D006457 5.8e-52 208.0 185 62.2
Sopen10g002320 Solanum pennellii HOM05D005249 ORTHO05D006457 7.6e-52 207.6 126 82.5
Thhalv10021639m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 1.0e-51 207.2 177 65.5
TWI38G0945 Tripterygium wilfordii HOM05D005249 ORTHO05D006457 1.3e-51 206.8 180 63.9
AL8G37450 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 1.7e-51 206.5 178 62.9
A05p28310 Brassica napus HOM05D005249 ORTHO05D006457 1.7e-51 206.5 178 65.7
BraA05t21713Z Brassica rapa HOM05D005249 ORTHO05D006457 1.7e-51 206.5 178 65.7
CSS0021065 Camellia sinensis var. sinensis HOM05D005249 ORTHO05D006457 2.9e-51 205.7 186 63.4
Prupe.4G209000 Prunus persica HOM05D005249 ORTHO05D006457 2.9e-51 205.7 179 63.7
SGA_v2.0_scaffold258G45797 Striga asiatica HOM05D005249 ORTHO05D006457 2.9e-51 205.7 188 64.4
BolC5t33095H Brassica oleracea HOM05D005249 ORTHO05D006457 3.8e-51 205.3 178 65.2
Gohir.A04G019300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 3.8e-51 205.3 149 71.8
RcHm_v2.0_Chr5g0038151 Rosa chinensis HOM05D005249 ORTHO05D006457 3.8e-51 205.3 182 64.8
Carub.0001s3985 Capsella rubella HOM05D005249 ORTHO05D006457 1.1e-50 203.8 178 63.5
Cc05_g13500 Coffea canephora HOM05D005249 ORTHO05D006457 1.1e-50 203.8 189 60.3
Migut.M01785 Erythranthe guttata HOM05D005249 ORTHO05D006457 1.1e-50 203.8 133 78.9
Aa31LG10G3330 Aethionema arabicum HOM05D005249 ORTHO05D006457 1.4e-50 203.4 130 76.2
Sp1g37640 Schrenkiella parvula HOM05D005249 ORTHO05D006457 1.4e-50 203.4 184 64.7
Carub.0003s2051 Capsella rubella HOM05D005249 ORTHO05D006457 1.9e-50 203.0 184 64.1
C05p43800 Brassica napus HOM05D005249 ORTHO05D006457 2.5e-50 202.6 178 64.0
HanXRQChr05g0159111 Helianthus annuus HOM05D005249 ORTHO05D006457 2.5e-50 202.6 184 59.8
Lsat_1_v5_gn_5_5181 Lactuca sativa HOM05D005249 ORTHO05D006457 3.2e-50 202.2 182 59.9
A05p19870 Brassica napus HOM05D005249 ORTHO05D006457 5.5e-50 201.4 178 63.5
A06p02830 Brassica napus HOM05D005249 ORTHO05D006457 5.5e-50 201.4 182 63.2
BraA05t20892Z Brassica rapa HOM05D005249 ORTHO05D006457 5.5e-50 201.4 178 63.5
BraA06t23490Z Brassica rapa HOM05D005249 ORTHO05D006457 5.5e-50 201.4 182 63.2
Nn1g07102 Nelumbo nucifera HOM05D005249 ORTHO05D006457 5.5e-50 201.4 180 59.4
PSO210G5271 Papaver somniferum HOM05D005249 ORTHO05D006457 5.5e-50 201.4 185 61.1
MSTRG.15162 Avicennia marina HOM05D005249 ORTHO05D006457 7.1e-50 201.1 176 65.9
AT1G50900 Arabidopsis thaliana HOM05D005249 ORTHO05D006457 9.3e-50 200.7 178 62.4
BcaC08g43263 Brassica carinata HOM05D005249 ORTHO05D006457 1.2e-49 200.3 179 63.7
C06p06070 Brassica napus HOM05D005249 ORTHO05D006457 1.2e-49 200.3 179 63.7
BolC6t35720H Brassica oleracea HOM05D005249 ORTHO05D006457 1.2e-49 200.3 179 63.7
Thhalv10011819m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 1.6e-49 199.9 170 65.3
BcaB07g33531 Brassica carinata HOM05D005249 ORTHO05D006457 2.1e-49 199.5 178 63.5
Sp3g18550 Schrenkiella parvula HOM05D005249 ORTHO05D006457 2.7e-49 199.1 178 63.5
Zm00001eb322850 Zea mays HOM05D005249 ORTHO05D006457 2.7e-49 199.1 191 60.2
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 3.5e-49 198.7 158 67.7
C05p33210 Brassica napus HOM05D005249 ORTHO05D006457 4.6e-49 198.4 130 75.4
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 7.9e-49 197.6 151 67.5
Gorai.009G425200 Gossypium raimondii HOM05D005249 ORTHO05D006457 1.0e-48 197.2 219 51.6
unitig_578.g16003 Utricularia gibba HOM05D005249 ORTHO05D006457 1.0e-48 197.2 135 72.6
AL1G58630 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 1.8e-48 196.4 180 61.1
Aqoxy1G03622 Aquilegia oxysepala HOM05D005249 ORTHO05D006457 3.0e-48 195.7 183 58.5
ECA246G1486 Erigeron canadensis HOM05D005249 ORTHO05D006457 3.0e-48 195.7 185 59.5
MBI02_g28338_MAGBIO Magnolia biondii HOM05D005249 ORTHO05D006457 3.0e-48 195.7 179 62.6
PSO832G4498 Papaver somniferum HOM05D005249 ORTHO05D006457 3.0e-48 195.7 185 59.5
Actinidia09913 Actinidia chinensis HOM05D005249 ORTHO05D006457 1.1e-47 193.7 185 60.5
MD03G1207700 Malus domestica HOM05D005249 ORTHO05D006457 1.9e-47 193.0 179 61.5
Oeu062605.1 Olea europaea HOM05D005249 ORTHO05D006457 4.3e-47 191.8 196 57.7
CDE05G2685 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 5.7e-47 191.4 124 77.4
HPP92_017607 Vanilla planifolia HOM05D005249 ORTHO05D006457 5.7e-47 191.4 178 59.0
Atru.chr2.3277 Acer truncatum HOM05D005249 ORTHO05D006457 1.3e-46 190.3 120 78.3
Actinidia05108 Actinidia chinensis HOM05D005249 ORTHO05D006457 2.8e-46 189.1 185 59.5
Os07g0520800 Oryza sativa ssp. japonica HOM05D005249 ORTHO05D006457 4.8e-46 188.3 124 75.8
ATR0752G229 Amborella trichopoda HOM05D005249 ORTHO05D006457 4.1e-45 185.3 127 74.8
Rhsim04G0001800 Rhododendron simsii HOM05D005249 ORTHO05D006457 5.3e-45 184.9 193 58.0
CDE05G0273 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 7.7e-44 181.0 183 56.8
BcaB02g11192 Brassica carinata HOM05D005249 ORTHO05D006457 1.7e-43 179.9 169 60.4
CDE11G0574 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 2.2e-43 179.5 177 56.5
SMO137G0373 Selaginella moellendorffii HOM05D005249 ORTHO05D006457 3.2e-42 175.6 125 69.6
SEGI_08050 Sequoiadendron giganteum HOM05D005249 ORTHO05D006457 7.2e-42 174.5 131 71.0
Dinv40734 Davidia involucrata HOM05D005249 ORTHO05D006457 4.6e-41 171.8 153 60.8
BcaB07g33530 Brassica carinata HOM05D005249 ORTHO05D006457 1.8e-40 169.9 152 63.2
Nitab4.5_0001393g0170 Nicotiana tabacum HOM05D005249 ORTHO05D006457 1.1e-39 167.2 190 57.4
FAN11G3900 Fragaria x ananassa HOM05D005249 ORTHO05D006340 2.0e-39 166.4 291 41.6
FAN16G3206 Fragaria x ananassa HOM05D005249 ORTHO05D006340 2.4e-37 159.5 291 39.9
CBR_g12744 Chara braunii HOM05D005249 ORTHO05D006457 5.3e-37 158.3 145 58.6
Pp3c5_16520 Physcomitrium patens HOM05D005249 ORTHO05D006457 2.5e-34 149.4 178 51.1
CARHR096310 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.8e-32 143.3 87 83.9
Mapoly0006s0110 Marchantia polymorpha HOM05D005249 ORTHO05D006457 5.7e-31 138.3 129 58.1
CARHR040950 Cardamine hirsuta HOM05D005249 ORTHO05D006457 7.4e-31 137.9 87 78.2
BcaB06g26188 Brassica carinata HOM05D005249 ORTHO05D006457 2.8e-30 136.0 177 53.7
Rhsim04G0000700 Rhododendron simsii HOM05D005249 ORTHO05D006457 6.3e-30 134.8 87 77.0
vmacro09735 Vaccinium macrocarpon HOM05D005249 ORTHO05D006457 8.2e-30 134.4 86 79.1
FAN21G3293 Fragaria x ananassa HOM05D005249 ORTHO05D006457 1.1e-29 134.0 82 84.1
TPR.G3850 Trifolium pratense HOM05D005249 ORTHO05D006457 1.4e-29 133.7 81 80.2
Cfa020388 Carpinus fangiana HOM05D005249 ORTHO05D006457 1.2e-28 130.6 82 80.5
PRCOL_00000858 Prasinoderma coloniale HOM05D005249 ORTHO05D006457 1.3e-27 127.1 100 62.0
Glyma.09G102000 Glycine max HOM05D005249 ORTHO05D006457 4.2e-26 122.1 86 73.3
Cre12.g551950 Chlamydomonas reinhardtii HOM05D005249 ORTHO05D006457 9.4e-26 120.9 92 57.6
MCO16G329 Micromonas commoda HOM05D005249 ORTHO05D006457 1.8e-24 116.7 94 58.5
Atru.chr2.3276 Acer truncatum HOM05D005249 ORTHO05D006457 2.4e-13 79.7 54 74.1
Hund02097 Selenicereus undatus HOM05D000420 ORTHO05D000110 2.4e-13 79.7 84 54.8
BcaC05g27382 Brassica carinata HOM05D005249 ORTHO05D006457 1.6e-12 77.0 54 74.1
Nn1g07101 Nelumbo nucifera HOM05D005249 ORTHO05D006457 4.5e-12 75.5 94 50.0
Ah.04g165680 Amaranthus hybridus HOM05D005769 ORTHO05D006851 1.1e-10 70.9 70 54.3
BcaC05g27384 Brassica carinata HOM05D005249 ORTHO05D006457 2.5e-10 69.7 92 47.8
CARHR040940 Cardamine hirsuta HOM05D005249 ORTHO05D006457 2.5e-10 69.7 94 50.0
CARHR096330 Cardamine hirsuta HOM05D005249 ORTHO05D006457 1.2e-09 67.4 102 43.1
CBR_g602 Chara braunii HOM05D005249 ORTHO05D006457 8.0e-09 64.7 69 43.5


User provided reference genes

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