Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.04g163400 Amaranthus hybridus HOM05D004195 ORTHO05D005309 1.6e-51 205.7 98 100.0
AUR62007701 Chenopodium quinoa HOM05D004195 ORTHO05D005309 1.1e-42 176.4 107 80.4
EL10Ac1g01366 Beta vulgaris HOM05D004195 ORTHO05D005309 5.3e-42 174.1 107 76.6
AUR62013439 Chenopodium quinoa HOM05D004195 ORTHO05D005309 3.0e-37 158.3 107 73.8
Sc26g0002830 Simmondsia chinensis HOM05D004195 ORTHO05D005309 2.5e-36 155.2 90 78.9
Rhsim11G0072300 Rhododendron simsii HOM05D004195 ORTHO05D005309 7.4e-36 153.7 90 77.8
TAR625G0293 Trochodendron aralioides HOM05D004195 ORTHO05D005309 1.3e-35 152.9 90 80.0
Manes.18G083251 Manihot esculenta HOM05D004195 ORTHO05D005309 2.2e-35 152.1 88 80.7
TAR381G1357 Trochodendron aralioides HOM05D004195 ORTHO05D005309 2.8e-35 151.8 90 78.9
Dinv14704 Davidia involucrata HOM05D004195 ORTHO05D005309 1.1e-34 149.8 90 75.6
TWI60G0549 Tripterygium wilfordii HOM05D004195 ORTHO05D005309 1.8e-34 149.1 90 74.4
Actinidia15207 Actinidia chinensis HOM05D004195 ORTHO05D005309 3.1e-34 148.3 90 75.6
FAN24G0605 Fragaria x ananassa HOM05D004195 ORTHO05D005309 3.1e-34 148.3 92 76.1
Potri.002G077400 Populus trichocarpa HOM05D004195 ORTHO05D005309 3.1e-34 148.3 88 78.4
Actinidia21272 Actinidia chinensis HOM05D004195 ORTHO05D005309 4.1e-34 147.9 90 76.7
FvH4_2g28000 Fragaria vesca HOM05D004195 ORTHO05D005309 4.1e-34 147.9 92 76.1
Sabra02G0060800 Salix brachista HOM05D004195 ORTHO05D005309 4.1e-34 147.9 88 79.5
Hund17352 Selenicereus undatus HOM05D004195 ORTHO05D005309 4.1e-34 147.9 111 66.7
TWI34G0939 Tripterygium wilfordii HOM05D004195 ORTHO05D005309 4.1e-34 147.9 88 77.3
Nitab4.5_0002557g0050 Nicotiana tabacum HOM05D004195 ORTHO05D005309 5.3e-34 147.5 90 74.4
CDE06G1518 Ceratophyllum demersum HOM05D004195 ORTHO05D005309 6.9e-34 147.1 89 74.2
FAN20G1489 Fragaria x ananassa HOM05D004195 ORTHO05D005309 6.9e-34 147.1 90 76.7
Nitab4.5_0000317g0080 Nicotiana tabacum HOM05D004195 ORTHO05D005309 6.9e-34 147.1 90 74.4
GSVIVG01008799001 Vitis vinifera HOM05D004195 ORTHO05D005309 6.9e-34 147.1 88 78.4
Dinv27263 Davidia involucrata HOM05D004195 ORTHO05D005309 9.1e-34 146.7 87 78.2
FAN27G3503 Fragaria x ananassa HOM05D004195 ORTHO05D005309 1.5e-33 146.0 90 75.6
Zm00001eb226930 Zea mays HOM05D004195 ORTHO05D005309 3.4e-33 144.8 89 71.9
MSTRG.25350 Avicennia marina HOM05D004195 ORTHO05D005309 4.5e-33 144.4 88 75.0
FAN15G2696 Fragaria x ananassa HOM05D004195 ORTHO05D005309 4.5e-33 144.4 90 76.7
MD15G1133100 Malus domestica HOM05D004195 ORTHO05D005309 4.5e-33 144.4 90 73.3
Atru.chr13.1591 Acer truncatum HOM05D004195 ORTHO05D005309 5.9e-33 144.1 87 74.7
Cc10_g13640 Coffea canephora HOM05D004195 ORTHO05D005309 5.9e-33 144.1 103 68.9
Aqoxy6G00296 Aquilegia oxysepala HOM05D004195 ORTHO05D005309 7.7e-33 143.7 86 74.4
CsaV3_6G034020 Cucumis sativus L. HOM05D004195 ORTHO05D005309 7.7e-33 143.7 88 77.3
Prupe.1G488700 Prunus persica HOM05D004195 ORTHO05D005309 7.7e-33 143.7 92 71.7
CSS0005980 Camellia sinensis var. sinensis HOM05D004195 ORTHO05D005309 1.0e-32 143.3 88 72.7
CiPaw.15G030800 Carya illinoinensis HOM05D004195 ORTHO05D005309 1.0e-32 143.3 90 75.6
HanXRQChr02g0055521 Helianthus annuus HOM05D004195 ORTHO05D005309 1.0e-32 143.3 88 75.0
Lj7C351T8 Lonicera japonica HOM05D004195 ORTHO05D005309 1.0e-32 143.3 88 75.0
AT5G52560 Arabidopsis thaliana HOM05D004195 ORTHO05D005309 1.3e-32 142.9 99 67.7
Cfa018421 Carpinus fangiana HOM05D004195 ORTHO05D005309 1.3e-32 142.9 90 73.3
Aa31LG9G14170 Aethionema arabicum HOM05D004195 ORTHO05D005309 1.7e-32 142.5 90 71.1
CARHR265560 Cardamine hirsuta HOM05D004195 ORTHO05D005309 1.7e-32 142.5 88 72.7
Haze_17642 Corylus avellana HOM05D004195 ORTHO05D005309 1.7e-32 142.5 90 72.2
Carub.0008s1270 Capsella rubella HOM05D004195 ORTHO05D005309 2.2e-32 142.1 99 66.7
Oeu045951.3 Olea europaea HOM05D004195 ORTHO05D005309 2.2e-32 142.1 88 73.9
PGSC0003DMG400023024 Solanum tuberosum HOM05D004195 ORTHO05D005309 2.2e-32 142.1 88 73.9
CDE07G0325 Ceratophyllum demersum HOM05D004195 ORTHO05D005309 2.9e-32 141.7 89 71.9
ClCG08G006050 Citrullus lanatus HOM05D004195 ORTHO05D005309 2.9e-32 141.7 88 75.0
MELO3C008467.2 Cucumis melo HOM05D004195 ORTHO05D005309 2.9e-32 141.7 88 76.1
SalBow7G3728 Salvia bowleyana HOM05D004195 ORTHO05D005309 2.9e-32 141.7 88 72.7
Migut.C01079 Erythranthe guttata HOM05D004195 ORTHO05D005309 3.8e-32 141.4 88 73.9
vmacro00869 Vaccinium macrocarpon HOM05D004195 ORTHO05D005309 3.8e-32 141.4 90 71.1
MSTRG.1402 Avicennia marina HOM05D004195 ORTHO05D005309 5.0e-32 141.0 88 75.0
Cpa.g.c44850 Carica papaya HOM05D004195 ORTHO05D005309 5.0e-32 141.0 89 73.0
Ciclev10000592m.g Citrus clementina HOM05D004195 ORTHO05D005309 5.0e-32 141.0 90 73.3
Hund26746 Selenicereus undatus HOM05D004195 ORTHO05D005309 5.0e-32 141.0 99 71.7
AL8G27030 Arabidopsis lyrata HOM05D004195 ORTHO05D005309 6.5e-32 140.6 99 66.7
Hma1.2p1_0880F.1_g231850 Hydrangea macrophylla HOM05D004195 ORTHO05D005309 6.5e-32 140.6 90 67.8
A09p55650 Brassica napus HOM05D004195 ORTHO05D005309 1.4e-31 139.4 105 64.8
BraA09t40966Z Brassica rapa HOM05D004195 ORTHO05D005309 1.4e-31 139.4 105 64.8
RcHm_v2.0_Chr6g0296821 Rosa chinensis HOM05D004195 ORTHO05D005309 1.4e-31 139.4 88 73.9
PGR042G0897 Punica granatum HOM05D004195 ORTHO05D005309 1.9e-31 139.0 88 73.9
Sopen04g025940 Solanum pennellii HOM05D004195 ORTHO05D005309 1.9e-31 139.0 88 72.7
Sopen04g025970 Solanum pennellii HOM05D004195 ORTHO05D005309 1.9e-31 139.0 88 72.7
Sp4g04790 Schrenkiella parvula HOM05D004195 ORTHO05D005309 2.5e-31 138.7 90 70.0
BcaC07g40866 Brassica carinata HOM05D004195 ORTHO05D005309 3.2e-31 138.3 97 68.0
C08p38640 Brassica napus HOM05D004195 ORTHO05D005309 3.2e-31 138.3 97 68.0
BolC8t51435H Brassica oleracea HOM05D004195 ORTHO05D005309 3.2e-31 138.3 97 68.0
Peaxi162Scf00066g00527 Petunia axillaris HOM05D004195 ORTHO05D005309 3.2e-31 138.3 88 71.6
Peaxi162Scf00946g00016 Petunia axillaris HOM05D004195 ORTHO05D005309 3.2e-31 138.3 90 68.9
Sed0021205 Sechium edule HOM05D004195 ORTHO05D005309 3.2e-31 138.3 88 72.7
CAN.G405.5 Capsicum annuum HOM05D004195 ORTHO05D005309 5.5e-31 137.5 89 73.0
Solyc04g058070.3 Solanum lycopersicum HOM05D004195 ORTHO05D005309 5.5e-31 137.5 88 71.6
Thecc.08G133900 Theobroma cacao HOM05D004195 ORTHO05D005309 5.5e-31 137.5 88 71.6
BcaB08g35185 Brassica carinata HOM05D004195 ORTHO05D005309 7.2e-31 137.1 105 62.9
HPP92_005775 Vanilla planifolia HOM05D004195 ORTHO05D005309 7.2e-31 137.1 88 71.6
CANSAT25G3797 Cannabis sativa HOM05D004195 ORTHO05D005309 9.4e-31 136.7 90 72.2
HanXRQChr14g0452241 Helianthus annuus HOM05D004195 ORTHO05D005309 9.4e-31 136.7 88 70.5
PSO729G0087 Papaver somniferum HOM05D004195 ORTHO05D005309 9.4e-31 136.7 91 70.3
ECA233G3807 Erigeron canadensis HOM05D004195 ORTHO05D005309 1.2e-30 136.3 88 70.5
ECA238G0374 Erigeron canadensis HOM05D004195 ORTHO05D005309 1.2e-30 136.3 88 69.3
Gorai.013G108400 Gossypium raimondii HOM05D004195 ORTHO05D005309 1.2e-30 136.3 87 71.3
CiPaw.16G022400 Carya illinoinensis HOM05D004195 ORTHO05D005309 1.6e-30 136.0 90 67.8
Lsat_1_v5_gn_2_99200 Lactuca sativa HOM05D004195 ORTHO05D005309 1.6e-30 136.0 88 70.5
Os06g0701200 Oryza sativa ssp. japonica HOM05D004195 ORTHO05D005309 1.6e-30 136.0 88 69.3
Eucgr.F03856 Eucalyptus grandis HOM05D004195 ORTHO05D005309 2.7e-30 135.2 88 71.6
SGA_v2.0_scaffold7G03728 Striga asiatica HOM05D004195 ORTHO05D005309 2.7e-30 135.2 102 63.7
Gohir.D03G063000 Gossypium hirsutum HOM05D004195 ORTHO05D005309 4.7e-30 134.4 87 70.1
SGA_v2.0_scaffold52G18908 Striga asiatica HOM05D004195 ORTHO05D005309 4.7e-30 134.4 88 70.5
PSO724G0104 Papaver somniferum HOM05D004195 ORTHO05D005309 6.1e-30 134.0 91 68.1
unitig_748.g7692 Utricularia gibba HOM05D004195 ORTHO05D005309 6.1e-30 134.0 90 67.8
Gohir.D08G239084 Gossypium hirsutum HOM05D004195 ORTHO05D005309 7.9e-30 133.7 88 68.2
Gorai.004G254500 Gossypium raimondii HOM05D004195 ORTHO05D005309 7.9e-30 133.7 88 68.2
Gohir.A08G221616 Gossypium hirsutum HOM05D004195 ORTHO05D005309 1.0e-29 133.3 88 67.0
SHI09238 Sapria himalayana HOM05D004195 ORTHO05D005309 1.0e-29 133.3 88 71.6
DCAR_003592 Daucus carota HOM05D004195 ORTHO05D005309 1.4e-29 132.9 90 66.7
Gohir.A05G238300 Gossypium hirsutum HOM05D004195 ORTHO05D005309 3.0e-29 131.7 103 62.1
Gohir.A10G100400 Gossypium hirsutum HOM05D004195 ORTHO05D005309 3.0e-29 131.7 88 67.0
Psat5g084360 Pisum sativum HOM05D004195 ORTHO05D005309 3.9e-29 131.3 83 71.1
THA.LOC104808371 Tarenaya hassleriana HOM05D004195 ORTHO05D000001 6.7e-29 130.6 96 63.5
arahy.Tifrunner.gnm1.ann1.8W34DS Arachis hypogaea HOM05D004195 ORTHO05D005309 8.8e-29 130.2 83 71.1
Lj4C664G15 Lonicera japonica HOM05D004195 ORTHO05D005309 1.5e-28 129.4 74 77.0
SEGI_17681 Sequoiadendron giganteum HOM05D004195 ORTHO05D005309 1.5e-28 129.4 97 63.9
SEGI_41147 Sequoiadendron giganteum HOM05D004195 ORTHO05D005309 1.5e-28 129.4 97 63.9
ATR1001G002 Amborella trichopoda HOM05D004195 ORTHO05D005309 2.0e-28 129.0 88 68.2
arahy.Tifrunner.gnm1.ann1.MX6LT2 Arachis hypogaea HOM05D004195 ORTHO05D005309 2.6e-28 128.6 83 69.9
arahy.Tifrunner.gnm1.ann1.TVXF2I Arachis hypogaea HOM05D004195 ORTHO05D005309 2.6e-28 128.6 83 69.9
Ca_16614_v3 Cicer arietinum L. HOM05D004195 ORTHO05D005309 2.6e-28 128.6 83 71.1
Lalb_Chr23g0271201 Lupinus albus HOM05D004195 ORTHO05D005309 2.6e-28 128.6 83 67.5
Nn5g28450 Nelumbo nucifera HOM05D004195 ORTHO05D005309 2.6e-28 128.6 74 78.4
Glyma.04G245100 Glycine max HOM05D004195 ORTHO05D005309 3.3e-28 128.3 83 68.7
PSO541G1755 Papaver somniferum HOM05D004195 ORTHO05D005309 4.4e-28 127.9 91 65.9
Medtr3g088650 Medicago truncatula HOM05D004195 ORTHO05D005309 7.4e-28 127.1 83 68.7
Glyma.06G118100 Glycine max HOM05D004195 ORTHO05D005309 1.3e-27 126.3 83 67.5
HPP92_009336 Vanilla planifolia HOM05D004195 ORTHO05D005309 1.3e-27 126.3 88 65.9
TPR.G6326 Trifolium pratense HOM05D004195 ORTHO05D005309 1.7e-27 125.9 83 68.7
Lj4A674G55 Lonicera japonica HOM05D004195 ORTHO05D005309 2.2e-27 125.6 74 75.7
VMungo1309G1545 Vigna mungo HOM05D004195 ORTHO05D005309 2.8e-27 125.2 83 67.5
BcaB08g36106 Brassica carinata HOM05D004195 ORTHO05D005309 4.8e-27 124.4 90 64.4
Lj1g0006497 Lotus japonicus HOM05D004195 ORTHO05D005309 6.3e-27 124.0 83 69.9
Phvul.009G130500 Phaseolus vulgaris HOM05D004195 ORTHO05D005309 5.3e-26 120.9 83 65.1
HPP92_005823 Vanilla planifolia HOM05D004195 ORTHO05D005309 7.7e-25 117.1 82 64.6
Mapoly0020s0171 Marchantia polymorpha HOM05D004195 ORTHO05D005309 1.0e-24 116.7 83 63.9
Thhalv10000457m.g Eutrema salsugineum HOM05D004195 ORTHO05D005309 3.2e-23 111.7 90 60.0
SMO144G0039 Selaginella moellendorffii HOM05D004195 ORTHO05D005309 4.2e-23 111.3 72 65.3
PSO675G4690 Papaver somniferum HOM05D004195 ORTHO05D005309 2.0e-20 102.4 70 68.6
Pp3c14_26160 Physcomitrium patens HOM05D004195 ORTHO05D005309 6.3e-19 97.4 87 51.7
Duzib116G0462 Durio zibethinus HOM05D004195 ORTHO05D005309 4.1e-18 94.7 83 55.4
MCO16G082 Micromonas commoda HOM05D004195 ORTHO05D005309 7.0e-18 94.0 87 48.3
Cre14.g621751 Chlamydomonas reinhardtii HOM05D004195 ORTHO05D005309 4.2e-15 84.7 95 45.3
HPP92_005816 Vanilla planifolia HOM05D004195 ORTHO05D005309 1.8e-13 79.3 50 70.0
PRCOL_00000078 Prasinoderma coloniale HOM05D004195 ORTHO05D005309 8.8e-13 77.0 81 48.1
Sed0012376 Sechium edule HOM05D004195 ORTHO05D005309 5.7e-12 74.3 39 87.2
Duzib093G0036 Durio zibethinus HOM05D004195 ORTHO05D005309 1.2e-09 66.6 50 62.0
Pp3c7_22840 Physcomitrium patens HOM05D004195 ORTHO05D005309 1.6e-09 66.2 72 41.7
MBI11_g47560_MAGBIO Magnolia biondii HOM05D002408 ORTHO05D002534 2.0e-09 65.9 39 76.9
Lsat_1_v5_gn_9_125000 Lactuca sativa HOM05D004195 ORTHO05D005309 1.0e-08 63.5 70 44.3
MBI15_g02237_MAGBIO Magnolia biondii HOM05D000738 ORTHO05D011926 2.5e-07 58.9 41 65.9
Duzib213G0704 Durio zibethinus HOM05D004195 ORTHO05D005309 7.2e-07 57.4 39 64.1
Oeu047171.1 Olea europaea HOM05D004195 ORTHO05D005309 1.6e-06 56.2 46 58.7


User provided reference genes

Program Settings