Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.04g159710 Amaranthus hybridus HOM05D002917 ORTHO05D002431 3.5e-45 184.5 87 100.0
AT5G19473 Arabidopsis thaliana HOM05D002917 ORTHO05D002431 3.3e-11 71.6 78 50.0
Oeu032569.1 Olea europaea HOM05D002917 ORTHO05D002431 5.6e-11 70.9 52 59.6
AL6G30970 Arabidopsis lyrata HOM05D002917 ORTHO05D002431 7.3e-11 70.5 78 50.0
Carub.0006s1781 Capsella rubella HOM05D002917 ORTHO05D002431 9.6e-11 70.1 79 49.4
MBI19_g20793_MAGBIO Magnolia biondii HOM05D002917 ORTHO05D002431 2.1e-10 68.9 55 58.2
Rhsim13G0207800 Rhododendron simsii HOM05D002917 ORTHO05D002431 2.1e-10 68.9 70 47.1
Sc09g0001070 Simmondsia chinensis HOM05D009394 ORTHO05D002431 2.8e-10 68.6 72 48.6
Sp6g24940 Schrenkiella parvula HOM05D002917 ORTHO05D002431 4.8e-10 67.8 55 58.2
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 8.1e-10 67.0 53 58.5
C09p56830 Brassica napus HOM05D002917 ORTHO05D002431 8.1e-10 67.0 53 58.5
BolC9t58537H Brassica oleracea HOM05D002917 ORTHO05D002431 8.1e-10 67.0 53 58.5
BraA10t44095Z Brassica rapa HOM05D006224 ORTHO05D007691 8.1e-10 67.0 53 58.5
Aqoxy1G00393 Aquilegia oxysepala HOM05D002917 ORTHO05D002431 1.4e-09 66.2 68 48.5
THA.LOC104799140 Tarenaya hassleriana HOM05D012161 ORTHO05D002431 1.8e-09 65.9 54 55.6
HPP92_001700 Vanilla planifolia HOM05D002917 ORTHO05D002431 1.8e-09 65.9 60 50.0
CARHR193450 Cardamine hirsuta HOM05D002917 ORTHO05D002431 3.1e-09 65.1 55 58.2
Thhalv10015114m.g Eutrema salsugineum HOM05D002917 ORTHO05D002431 4.0e-09 64.7 54 53.7
Gohir.A08G010300 Gossypium hirsutum HOM05D009394 ORTHO05D002431 6.9e-09 63.9 84 39.3
Gohir.A09G110600 Gossypium hirsutum HOM05D009394 ORTHO05D002431 6.9e-09 63.9 63 47.6
Gohir.D09G107100 Gossypium hirsutum HOM05D009394 ORTHO05D002431 6.9e-09 63.9 63 47.6
Gorai.006G124700 Gossypium raimondii HOM05D009394 ORTHO05D002431 6.9e-09 63.9 63 47.6
Potri.009G067600 Populus trichocarpa HOM05D002917 ORTHO05D002431 6.9e-09 63.9 48 60.4
GSVIVG01037326001 Vitis vinifera HOM05D002917 ORTHO05D002431 6.9e-09 63.9 79 45.6
Potri.001G273300 Populus trichocarpa HOM05D002917 ORTHO05D002431 9.0e-09 63.5 56 53.6
TAR625G0139 Trochodendron aralioides HOM05D002917 ORTHO05D002431 1.2e-08 63.2 66 50.0
CSS0010926 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 1.5e-08 62.8 69 49.3
Manes.02G136400 Manihot esculenta HOM05D002917 ORTHO05D002431 1.5e-08 62.8 70 45.7
BcaB01g05147 Brassica carinata HOM05D002917 ORTHO05D002431 2.0e-08 62.4 55 58.2
A03p09490 Brassica napus HOM05D002917 ORTHO05D002431 2.0e-08 62.4 55 58.2
C03p11070 Brassica napus HOM05D002917 ORTHO05D002431 2.0e-08 62.4 55 58.2
BolC3t13577H Brassica oleracea HOM05D002917 ORTHO05D002431 2.0e-08 62.4 55 58.2
BraA03t10267Z Brassica rapa HOM05D002917 ORTHO05D002431 2.0e-08 62.4 55 58.2
FAN28G1232 Fragaria x ananassa HOM05D002917 ORTHO05D002431 2.0e-08 62.4 88 38.6
Nitab4.5_0004840g0020 Nicotiana tabacum HOM05D002917 ORTHO05D002431 2.6e-08 62.0 63 47.6
Sabra09G0050600 Salix brachista HOM05D002917 ORTHO05D002431 2.6e-08 62.0 48 58.3
Duzib170G0372 Durio zibethinus HOM05D006044 ORTHO05D007653 3.4e-08 61.6 74 43.2
Gorai.004G015000 Gossypium raimondii HOM05D009394 ORTHO05D002431 3.4e-08 61.6 78 41.0
Nitab4.5_0007284g0050 Nicotiana tabacum HOM05D002917 ORTHO05D002431 3.4e-08 61.6 67 44.8
Prupe.4G264200 Prunus persica HOM05D002917 ORTHO05D002431 3.4e-08 61.6 72 47.2
Sabra07G0067800 Salix brachista HOM05D002917 ORTHO05D002431 3.4e-08 61.6 83 41.0
Gohir.D08G020400 Gossypium hirsutum HOM05D009394 ORTHO05D002431 4.4e-08 61.2 77 41.6
Nn7g36760 Nelumbo nucifera HOM05D002917 ORTHO05D002431 4.4e-08 61.2 65 44.6
Sopen11g024730 Solanum pennellii HOM05D012161 ORTHO05D002431 4.4e-08 61.2 48 58.3
BcaB01g04859 Brassica carinata HOM05D002917 ORTHO05D002431 5.8e-08 60.8 55 56.4
FAN26G2985 Fragaria x ananassa HOM05D002917 ORTHO05D002431 5.8e-08 60.8 80 41.2
RcHm_v2.0_Chr5g0050361 Rosa chinensis HOM05D012161 ORTHO05D002431 5.8e-08 60.8 74 45.9
FvH4_1g22590 Fragaria vesca HOM05D002917 ORTHO05D002431 7.6e-08 60.5 82 40.2
FAN21G0185 Fragaria x ananassa HOM05D002917 ORTHO05D002431 7.6e-08 60.5 73 45.2
FAN23G2482 Fragaria x ananassa HOM05D002917 ORTHO05D002431 7.6e-08 60.5 82 40.2
FAN28G1462 Fragaria x ananassa HOM05D002917 ORTHO05D002431 7.6e-08 60.5 82 40.2
PGR119G1093 Punica granatum HOM05D002917 ORTHO05D002431 7.6e-08 60.5 74 43.2
RcHm_v2.0_Chr2g0116611 Rosa chinensis HOM05D002917 ORTHO05D002431 7.6e-08 60.5 82 40.2
Sc03g0004380 Simmondsia chinensis HOM05D002917 ORTHO05D002431 7.6e-08 60.5 79 40.5
BcaB04g19997 Brassica carinata HOM05D002917 ORTHO05D002431 9.9e-08 60.1 54 50.0
FAN19G2300 Fragaria x ananassa HOM05D002917 ORTHO05D002431 9.9e-08 60.1 70 44.3
Prupe.6G172200 Prunus persica HOM05D002917 ORTHO05D002431 9.9e-08 60.1 77 42.9
QL01p016834 Quercus lobata HOM05D012161 ORTHO05D002431 9.9e-08 60.1 64 50.0
BcaC01g02719 Brassica carinata HOM05D002917 ORTHO05D002431 1.3e-07 59.7 54 50.0
C03p61320 Brassica napus HOM05D002917 ORTHO05D002431 1.3e-07 59.7 54 50.0
BolC3t18392H Brassica oleracea HOM05D002917 ORTHO05D002431 1.3e-07 59.7 54 50.0
CANSAT01G0734 Cannabis sativa HOM05D002917 ORTHO05D002431 1.3e-07 59.7 54 50.0
CAN.G468.5 Capsicum annuum HOM05D012161 ORTHO05D002431 1.3e-07 59.7 50 54.0
Dinv15024 Davidia involucrata HOM05D002917 ORTHO05D002431 1.3e-07 59.7 70 42.9
Aa31LG1G17080 Aethionema arabicum HOM05D002917 ORTHO05D002431 1.7e-07 59.3 54 50.0
Nitab4.5_0009266g0010 Nicotiana tabacum HOM05D012161 ORTHO05D002431 1.7e-07 59.3 50 54.0
BcaC04g23276 Brassica carinata HOM05D002917 ORTHO05D002431 2.2e-07 58.9 54 50.0
A09p08870 Brassica napus HOM05D002917 ORTHO05D002431 2.2e-07 58.9 54 50.0
C09p10290 Brassica napus HOM05D002917 ORTHO05D002431 2.2e-07 58.9 54 50.0
BolC9t53929H Brassica oleracea HOM05D002917 ORTHO05D002431 2.2e-07 58.9 54 50.0
BraA09t36538Z Brassica rapa HOM05D002917 ORTHO05D002431 2.2e-07 58.9 54 50.0
Cpa.g.sc34.178 Carica papaya HOM05D009394 ORTHO05D002431 2.2e-07 58.9 53 50.9
Thhalv10005264m.g Eutrema salsugineum HOM05D002917 ORTHO05D002431 2.2e-07 58.9 54 50.0
Sabra16G0168400 Salix brachista HOM05D002917 ORTHO05D002431 2.2e-07 58.9 55 49.1
A06p31640 Brassica napus HOM05D002917 ORTHO05D002431 2.9e-07 58.5 54 50.0
BraA06t26100Z Brassica rapa HOM05D002917 ORTHO05D002431 2.9e-07 58.5 54 50.0
CsaV3_6G038900 Cucumis sativus L. HOM05D009394 ORTHO05D002431 2.9e-07 58.5 71 43.7
MD15G1332200 Malus domestica HOM05D002917 ORTHO05D002431 2.9e-07 58.5 79 39.2
Sp2g27930 Schrenkiella parvula HOM05D002917 ORTHO05D002431 2.9e-07 58.5 95 33.7
GSVIVG01022234001 Vitis vinifera HOM05D002917 ORTHO05D002431 2.9e-07 58.5 66 47.0
Cpa.g.sc191.8 Carica papaya HOM05D002917 ORTHO05D002431 3.8e-07 58.2 77 42.9
Lalb_Chr18g0049791 Lupinus albus HOM05D009394 ORTHO05D002431 3.8e-07 58.2 86 43.0
Peaxi162Scf00133g01414 Petunia axillaris HOM05D002917 ORTHO05D002431 3.8e-07 58.2 83 41.0
Atru.chr3.2999 Acer truncatum HOM05D002917 ORTHO05D002431 4.9e-07 57.8 59 45.8
BcaB02g09835 Brassica carinata HOM05D002917 ORTHO05D002431 4.9e-07 57.8 52 50.0
BcaC01g02717 Brassica carinata HOM05D002917 ORTHO05D002431 4.9e-07 57.8 52 50.0
ClCG02G001020 Citrullus lanatus HOM05D002917 ORTHO05D002431 4.9e-07 57.8 66 45.5
Ciclev10018107m.g Citrus clementina HOM05D002917 ORTHO05D002431 4.9e-07 57.8 62 50.0
Lsat_1_v5_gn_4_137421 Lactuca sativa HOM05D002917 ORTHO05D002431 4.9e-07 57.8 79 38.0
TWI74G1161 Tripterygium wilfordii HOM05D002917 ORTHO05D002431 4.9e-07 57.8 77 41.6
CsaV3_2G017680 Cucumis sativus L. HOM05D002917 ORTHO05D002431 6.4e-07 57.4 66 45.5
Eucgr.J00684 Eucalyptus grandis HOM05D002917 ORTHO05D002431 6.4e-07 57.4 55 47.3
MD01G1020100 Malus domestica HOM05D002917 ORTHO05D002431 6.4e-07 57.4 76 40.8
Thecc.09G247400 Theobroma cacao HOM05D002917 ORTHO05D002431 6.4e-07 57.4 61 47.5
CARHR278860 Cardamine hirsuta HOM05D002917 ORTHO05D002431 8.4e-07 57.0 62 46.8
Dinv42690 Davidia involucrata HOM05D002917 ORTHO05D002431 8.4e-07 57.0 75 41.3
Duzib187G0794 Durio zibethinus HOM05D002917 ORTHO05D002431 8.4e-07 57.0 81 39.5
Manes.12G143000 Manihot esculenta HOM05D002917 ORTHO05D002431 8.4e-07 57.0 76 40.8
Sed0016541 Sechium edule HOM05D002917 ORTHO05D002431 8.4e-07 57.0 72 43.1
Solyc04g011910.3 Solanum lycopersicum HOM05D002917 ORTHO05D002431 8.4e-07 57.0 77 39.0
Sopen04g006050 Solanum pennellii HOM05D002917 ORTHO05D002431 8.4e-07 57.0 77 39.0
COL.COLO4_24485 Corchorus olitorius HOM05D009394 ORTHO05D002431 1.1e-06 56.6 59 50.8
Dinv19484 Davidia involucrata HOM05D002917 ORTHO05D002431 1.1e-06 56.6 70 44.3
Nn5g28892 Nelumbo nucifera HOM05D002917 ORTHO05D002431 1.1e-06 56.6 58 48.3
Solyc11g064930.3 Solanum lycopersicum HOM05D012161 ORTHO05D002431 1.1e-06 56.6 48 56.2
CSS0021781 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 1.4e-06 56.2 50 54.0
CANSAT54G1823 Cannabis sativa HOM05D002917 ORTHO05D002431 1.4e-06 56.2 79 48.1
MELO3C007484.2 Cucumis melo HOM05D002917 ORTHO05D002431 1.4e-06 56.2 50 54.0
MELO3C020960.2 Cucumis melo HOM05D002917 ORTHO05D002431 1.4e-06 56.2 50 52.0
CsaV3_6G042410 Cucumis sativus L. HOM05D002917 ORTHO05D002431 1.4e-06 56.2 50 54.0
Hma1.2p1_0375F.1_g138750 Hydrangea macrophylla HOM05D002917 ORTHO05D002431 1.4e-06 56.2 71 45.1
Medtr5g089290 Medicago truncatula HOM05D009394 ORTHO05D002431 1.4e-06 56.2 67 44.8
Potri.007G080800 Populus trichocarpa HOM05D002917 ORTHO05D002431 1.4e-06 56.2 54 51.9
Actinidia28896 Actinidia chinensis HOM05D002917 ORTHO05D002431 1.9e-06 55.8 53 52.8
Actinidia33358 Actinidia chinensis HOM05D002917 ORTHO05D002431 1.9e-06 55.8 54 51.9
Aa31LG3G17190 Aethionema arabicum HOM05D002917 ORTHO05D002431 2.4e-06 55.5 52 48.1
BcaC03g18283 Brassica carinata HOM05D002917 ORTHO05D002431 2.4e-06 55.5 54 46.3
A02p43530 Brassica napus HOM05D002917 ORTHO05D002431 2.4e-06 55.5 54 46.3
C02p63620 Brassica napus HOM05D002917 ORTHO05D002431 2.4e-06 55.5 54 46.3
BolC2t12428H Brassica oleracea HOM05D002917 ORTHO05D002431 2.4e-06 55.5 54 46.3
BraA02t09281Z Brassica rapa HOM05D002917 ORTHO05D002431 2.4e-06 55.5 54 46.3
CSS0004580 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 2.4e-06 55.5 53 52.8
Carub.0008s2568 Capsella rubella HOM05D002917 ORTHO05D002431 2.4e-06 55.5 54 46.3
Lalb_Chr13g0296221 Lupinus albus HOM05D002917 ORTHO05D002431 2.4e-06 55.5 80 36.2
Nn1g05176 Nelumbo nucifera HOM05D002917 ORTHO05D002431 2.4e-06 55.5 54 48.1
Nitab4.5_0006764g0020 Nicotiana tabacum HOM05D012161 ORTHO05D002431 2.4e-06 55.5 64 42.2
Phvul.009G139200 Phaseolus vulgaris HOM05D002917 ORTHO05D002431 2.4e-06 55.5 77 36.4
PGR004G1449 Punica granatum HOM05D002917 ORTHO05D002431 2.4e-06 55.5 79 39.2
Hund19653 Selenicereus undatus HOM05D002917 ORTHO05D002431 2.4e-06 55.5 54 46.3
CiPaw.04G091400 Carya illinoinensis HOM05D002917 ORTHO05D002431 3.2e-06 55.1 50 52.0
DCAR_014262 Daucus carota HOM05D002917 ORTHO05D002431 3.2e-06 55.1 79 40.5
Gorai.003G047500 Gossypium raimondii HOM05D002917 ORTHO05D002431 3.2e-06 55.1 74 43.2
Nitab4.5_0004378g0020 Nicotiana tabacum HOM05D002917 ORTHO05D002431 3.2e-06 55.1 50 50.0
Peaxi162Scf00359g00124 Petunia axillaris HOM05D002917 ORTHO05D002431 3.2e-06 55.1 69 42.0
TWI53G0786 Tripterygium wilfordii HOM05D002917 ORTHO05D002431 3.2e-06 55.1 54 50.0
TAR628G1039 Trochodendron aralioides HOM05D002917 ORTHO05D002431 3.2e-06 55.1 54 48.1
A10p09020 Brassica napus HOM05D002917 ORTHO05D002431 4.2e-06 54.7 52 48.1
COL.COLO4_11006 Corchorus olitorius HOM05D002917 ORTHO05D002431 4.2e-06 54.7 54 50.0
Migut.N02378 Erythranthe guttata HOM05D009394 ORTHO05D002431 4.2e-06 54.7 58 46.6
Eucgr.I00320 Eucalyptus grandis HOM05D002917 ORTHO05D002431 4.2e-06 54.7 75 40.0
Glyma.06G146800 Glycine max HOM05D002917 ORTHO05D002431 4.2e-06 54.7 77 36.4
Lalb_Chr10g0106201 Lupinus albus HOM05D009394 ORTHO05D002431 4.2e-06 54.7 80 37.5
Thecc.01G113600 Theobroma cacao HOM05D002917 ORTHO05D002431 4.2e-06 54.7 54 50.0
vmacro18635 Vaccinium macrocarpon HOM05D002917 ORTHO05D002431 4.2e-06 54.7 53 50.9
arahy.Tifrunner.gnm1.ann1.NQ28YP Arachis hypogaea HOM05D009394 ORTHO05D002431 5.4e-06 54.3 65 44.6
ClCG01G016140 Citrullus lanatus HOM05D002917 ORTHO05D002431 5.4e-06 54.3 49 53.1
Lalb_Chr08g0238811 Lupinus albus HOM05D002917 ORTHO05D002431 5.4e-06 54.3 76 38.2
QL06p032044 Quercus lobata HOM05D002917 ORTHO05D002431 5.4e-06 54.3 52 50.0
SHI11691 Sapria himalayana HOM05D002917 ORTHO05D002431 5.4e-06 54.3 71 40.8
arahy.Tifrunner.gnm1.ann1.A4AUQP Arachis hypogaea HOM05D002917 ORTHO05D002431 7.1e-06 53.9 55 45.5
CSS0017424 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 7.1e-06 53.9 73 45.2
CSS0039673 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 7.1e-06 53.9 73 45.2
CSS0046773 Camellia sinensis var. sinensis HOM05D002917 ORTHO05D002431 7.1e-06 53.9 52 51.9
Glyma.05G184200 Glycine max HOM05D002917 ORTHO05D002431 7.1e-06 53.9 90 32.2
BcaB07g29762 Brassica carinata HOM05D002917 ORTHO05D002431 9.3e-06 53.5 52 46.2
CDE05G1218 Ceratophyllum demersum HOM05D002917 ORTHO05D002431 9.3e-06 53.5 80 33.8
Ciclev10026820m.g Citrus clementina HOM05D002917 ORTHO05D002431 9.3e-06 53.5 65 43.1
ECA232G3996 Erigeron canadensis HOM05D002917 ORTHO05D002431 9.3e-06 53.5 86 36.0
Gohir.A02G135500 Gossypium hirsutum HOM05D002917 ORTHO05D002431 9.3e-06 53.5 54 48.1
Gohir.A12G092400 Gossypium hirsutum HOM05D002917 ORTHO05D002431 9.3e-06 53.5 55 49.1
Gohir.D03G046500 Gossypium hirsutum HOM05D002917 ORTHO05D002431 9.3e-06 53.5 54 48.1
Lalb_Chr12g0203511 Lupinus albus HOM05D002917 ORTHO05D002431 9.3e-06 53.5 79 36.7


User provided reference genes

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