Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g147330 Amaranthus hybridus HOM05D000245 ORTHO05D021158 1.2e-35 152.9 90 100.0
Ah.15g093020 Amaranthus hybridus HOM05D000245 ORTHO05D000020 2.2e-34 148.7 90 84.4
Ah.02g117140 Amaranthus hybridus HOM05D000245 ORTHO05D021158 5.4e-33 144.1 90 93.3
AUR62043487 Chenopodium quinoa HOM05D000245 ORTHO05D000020 2.9e-18 95.1 53 79.2
AUR62008711 Chenopodium quinoa HOM05D000245 ORTHO05D000020 8.4e-18 93.6 53 77.4
AUR62025525 Chenopodium quinoa HOM05D000245 ORTHO05D000020 1.9e-17 92.4 53 77.4
Hund05450 Selenicereus undatus HOM05D000245 ORTHO05D000020 5.4e-17 90.9 60 71.7
EL10Ac7g17571 Beta vulgaris HOM05D000245 ORTHO05D000020 2.1e-16 89.0 60 73.3
Ah.08g213540 Amaranthus hybridus HOM05D001493 ORTHO05D000020 4.7e-13 77.8 59 61.0
Dinv33076 Davidia involucrata HOM05D000245 ORTHO05D000020 6.2e-13 77.4 63 61.9
HanXRQChr06g0167701 Helianthus annuus HOM05D000245 ORTHO05D000020 8.1e-13 77.0 54 63.0
QL08p052215 Quercus lobata HOM05D000245 ORTHO05D021158 1.4e-12 76.3 53 62.3
Sc17g0003030 Simmondsia chinensis HOM05D000245 ORTHO05D000020 1.8e-12 75.9 60 60.0
TAR362G0701 Trochodendron aralioides HOM05D000245 ORTHO05D000020 2.4e-12 75.5 55 61.8
Oeu008343.1 Olea europaea HOM05D000245 ORTHO05D000020 3.1e-12 75.1 57 63.2
HanXRQChr04g0114741 Helianthus annuus HOM05D000245 ORTHO05D000020 4.0e-12 74.7 53 64.2
Dinv02023 Davidia involucrata HOM05D000245 ORTHO05D021158 9.0e-12 73.6 61 57.4
Dinv10040 Davidia involucrata HOM05D000245 ORTHO05D000020 9.0e-12 73.6 61 57.4
Dinv19668 Davidia involucrata HOM05D000245 ORTHO05D000020 9.0e-12 73.6 61 57.4
CiPaw.07G112200 Carya illinoinensis HOM05D000245 ORTHO05D000020 1.2e-11 73.2 53 62.3
TAR633G0380 Trochodendron aralioides HOM05D000245 ORTHO05D000020 1.2e-11 73.2 55 60.0
Oeu008345.1 Olea europaea HOM05D000245 ORTHO05D000020 1.5e-11 72.8 57 61.4
Actinidia21434 Actinidia chinensis HOM05D000245 ORTHO05D000020 2.6e-11 72.0 55 61.8
Actinidia25820 Actinidia chinensis HOM05D000245 ORTHO05D000020 2.6e-11 72.0 60 60.0
ECA236G1351 Erigeron canadensis HOM05D000245 ORTHO05D000020 2.6e-11 72.0 53 58.5
QL12p027792 Quercus lobata HOM05D000245 ORTHO05D000020 2.6e-11 72.0 53 58.5
Potri.002G201600 Populus trichocarpa HOM05D000245 ORTHO05D000020 3.4e-11 71.6 54 64.8
Cpa.g.sc151.30 Carica papaya HOM05D000245 ORTHO05D000020 4.4e-11 71.2 58 56.9
FAN15G3494 Fragaria x ananassa HOM05D000245 ORTHO05D000020 4.4e-11 71.2 53 67.9
CSS0031448 Camellia sinensis var. sinensis HOM05D000245 ORTHO05D000020 5.8e-11 70.9 62 56.5
FvH4_2g26080 Fragaria vesca HOM05D000245 ORTHO05D000020 9.9e-11 70.1 53 67.9
FAN20G2087 Fragaria x ananassa HOM05D000245 ORTHO05D000020 9.9e-11 70.1 53 66.0
FAN24G2143 Fragaria x ananassa HOM05D000245 ORTHO05D000020 9.9e-11 70.1 53 67.9
CAN.G862.63 Capsicum annuum HOM05D000245 ORTHO05D000020 1.3e-10 69.7 54 61.1
MELO3C017940.2 Cucumis melo HOM05D000245 ORTHO05D000020 1.3e-10 69.7 53 62.3
FAN27G1186 Fragaria x ananassa HOM05D000245 ORTHO05D000020 1.3e-10 69.7 53 64.2
Lj1C22T12 Lonicera japonica HOM05D000245 ORTHO05D000020 1.3e-10 69.7 53 64.2
PGR119G0257 Punica granatum HOM05D000245 ORTHO05D000020 1.3e-10 69.7 60 61.7
Sabra02G0157400 Salix brachista HOM05D000245 ORTHO05D000020 1.3e-10 69.7 53 66.0
MSTRG.21648 Avicennia marina HOM05D000245 ORTHO05D000020 2.2e-10 68.9 56 60.7
DCAR_005784 Daucus carota HOM05D000245 ORTHO05D000020 2.2e-10 68.9 54 57.4
Lsat_1_v5_gn_8_164520 Lactuca sativa HOM05D000245 ORTHO05D000020 2.2e-10 68.9 53 60.4
vmacro15137 Vaccinium macrocarpon HOM05D000245 ORTHO05D000020 2.2e-10 68.9 61 54.1
CSS0035247 Camellia sinensis var. sinensis HOM05D000245 ORTHO05D000020 2.9e-10 68.6 62 53.2
Peaxi162Scf00001g00352 Petunia axillaris HOM05D000245 ORTHO05D000020 2.9e-10 68.6 54 55.6
CsaV3_4G000990 Cucumis sativus L. HOM05D000245 ORTHO05D000020 3.8e-10 68.2 53 60.4
Manes.01G222600 Manihot esculenta HOM05D000245 ORTHO05D000020 3.8e-10 68.2 53 60.4
RcHm_v2.0_Chr6g0294441 Rosa chinensis HOM05D000245 ORTHO05D000020 3.8e-10 68.2 53 58.5
Duzib138G0004 Durio zibethinus HOM05D000245 ORTHO05D000020 4.9e-10 67.8 53 62.3
Nitab4.5_0000116g0330 Nicotiana tabacum HOM05D000245 ORTHO05D000020 4.9e-10 67.8 55 56.4
Sopen09g030200 Solanum pennellii HOM05D000245 ORTHO05D000020 4.9e-10 67.8 55 58.2
Nitab4.5_0000803g0030 Nicotiana tabacum HOM05D000245 ORTHO05D000020 6.4e-10 67.4 58 53.4
Prupe.8G264900 Prunus persica HOM05D000245 ORTHO05D000020 6.4e-10 67.4 53 66.0
MSTRG.21649 Avicennia marina HOM05D000245 ORTHO05D000020 8.4e-10 67.0 54 59.3
ClCG10G011120 Citrullus lanatus HOM05D000245 ORTHO05D000020 8.4e-10 67.0 53 58.5
Actinidia21025 Actinidia chinensis HOM05D000245 ORTHO05D000020 1.1e-09 66.6 61 54.1
Duzib138G0617 Durio zibethinus HOM05D000245 ORTHO05D000020 1.1e-09 66.6 55 61.8
Sed0016897 Sechium edule HOM05D000245 ORTHO05D000020 1.4e-09 66.2 53 58.5
Solyc09g075420.3 Solanum lycopersicum HOM05D000245 ORTHO05D000020 1.9e-09 65.9 55 56.4
PGSC0003DMG400031795 Solanum tuberosum HOM05D000245 ORTHO05D000020 1.9e-09 65.9 55 56.4
Duzib133G0934 Durio zibethinus HOM05D000245 ORTHO05D000020 2.4e-09 65.5 54 61.1
Eucgr.H01085 Eucalyptus grandis HOM05D000245 ORTHO05D000020 2.4e-09 65.5 53 60.4
MD11G1306500 Malus domestica HOM05D000245 ORTHO05D000020 2.4e-09 65.5 59 57.6
CANSAT25G2954 Cannabis sativa HOM05D000245 ORTHO05D000020 3.2e-09 65.1 53 58.5
COL.COLO4_23306 Corchorus olitorius HOM05D000245 ORTHO05D000020 3.2e-09 65.1 53 58.5
Gorai.004G142800 Gossypium raimondii HOM05D000245 ORTHO05D000020 3.2e-09 65.1 53 58.5
THA.LOC104817479 Tarenaya hassleriana HOM05D000245 ORTHO05D000020 3.2e-09 65.1 54 63.0
Thecc.01G305800 Theobroma cacao HOM05D000245 ORTHO05D000020 3.2e-09 65.1 52 61.5
Gorai.004G051600 Gossypium raimondii HOM05D000245 ORTHO05D000020 4.2e-09 64.7 56 60.7
Nn4g25739 Nelumbo nucifera HOM05D000245 ORTHO05D000020 4.2e-09 64.7 61 50.8
Migut.D00130 Erythranthe guttata HOM05D000245 ORTHO05D000020 5.4e-09 64.3 54 57.4
SGA_v2.0_scaffold2G01381 Striga asiatica HOM05D000245 ORTHO05D000020 5.4e-09 64.3 60 51.7
ATR0099G024 Amborella trichopoda HOM05D000245 ORTHO05D000020 7.1e-09 63.9 55 50.9
Gohir.D08G051700 Gossypium hirsutum HOM05D000245 ORTHO05D000020 7.1e-09 63.9 54 61.1
Gohir.D08G139100 Gossypium hirsutum HOM05D000245 ORTHO05D000020 7.1e-09 63.9 53 56.6
Rhsim01G0287500 Rhododendron simsii HOM05D000245 ORTHO05D000020 7.1e-09 63.9 55 58.2
Thecc.01G305400 Theobroma cacao HOM05D000245 ORTHO05D000020 9.3e-09 63.5 53 56.6
MSTRG.18135 Avicennia marina HOM05D000245 ORTHO05D000020 1.2e-08 63.2 54 59.3
THA.LOC104804723 Tarenaya hassleriana HOM05D000245 ORTHO05D000020 1.2e-08 63.2 59 49.2
THA.LOC104814747 Tarenaya hassleriana HOM05D000245 ORTHO05D000020 1.2e-08 63.2 59 49.2
THA.LOC104827676 Tarenaya hassleriana HOM05D000245 ORTHO05D000020 1.2e-08 63.2 59 49.2
unitig_60.g25583 Utricularia gibba HOM05D000245 ORTHO05D000020 1.2e-08 63.2 54 53.7
Gohir.A08G118100 Gossypium hirsutum HOM05D000245 ORTHO05D000020 1.6e-08 62.8 53 54.7
Lj5g0022230 Lotus japonicus HOM05D000245 ORTHO05D000020 1.6e-08 62.8 53 56.6
Cc01_g21090 Coffea canephora HOM05D000245 ORTHO05D000020 2.1e-08 62.4 53 52.8
Glyma.10G016500 Glycine max HOM05D000245 ORTHO05D000020 2.1e-08 62.4 52 59.6
Thecc.01G305200 Theobroma cacao HOM05D000245 ORTHO05D000020 2.7e-08 62.0 56 53.6
Gohir.A08G041600 Gossypium hirsutum HOM05D000245 ORTHO05D000020 3.5e-08 61.6 56 57.1
PSO170G1965 Papaver somniferum HOM05D000245 ORTHO05D000020 3.5e-08 61.6 82 39.0
Haze_04979 Corylus avellana HOM05D000245 ORTHO05D000020 4.6e-08 61.2 49 63.3
Phvul.007G217800 Phaseolus vulgaris HOM05D000245 ORTHO05D000020 4.6e-08 61.2 52 57.7
TWI14G1013 Tripterygium wilfordii HOM05D000245 ORTHO05D000020 4.6e-08 61.2 52 59.6
Aa31LG1G28850 Aethionema arabicum HOM05D000245 ORTHO05D000020 7.8e-08 60.5 54 57.4
COL.COLO4_23308 Corchorus olitorius HOM05D000245 ORTHO05D000020 7.8e-08 60.5 49 61.2
Actinidia20003 Actinidia chinensis HOM05D000245 ORTHO05D021158 1.0e-07 60.1 55 50.9
MBI18_g21797_MAGBIO Magnolia biondii HOM05D000245 ORTHO05D000020 1.0e-07 60.1 56 53.6
unitig_0.g405 Utricularia gibba HOM05D000245 ORTHO05D000020 1.0e-07 60.1 54 59.3
GSVIVG01028050001 Vitis vinifera HOM05D000245 ORTHO05D000020 1.0e-07 60.1 66 50.0
Potri.014G126100 Populus trichocarpa HOM05D000245 ORTHO05D000020 1.3e-07 59.7 53 56.6
VMungo0720G1171 Vigna mungo HOM05D000245 ORTHO05D000020 1.3e-07 59.7 52 55.8
ATR0693G281 Amborella trichopoda HOM05D000245 ORTHO05D000020 1.7e-07 59.3 60 50.0
Hma1.2p1_0494F.1_g165440 Hydrangea macrophylla HOM05D000245 ORTHO05D000020 1.7e-07 59.3 53 52.8
Ca_10317_v3 Cicer arietinum L. HOM05D000245 ORTHO05D021158 2.3e-07 58.9 52 57.7
THA.LOC104802181 Tarenaya hassleriana HOM05D000245 ORTHO05D000020 2.3e-07 58.9 53 50.9
Cfa005868 Carpinus fangiana HOM05D000245 ORTHO05D000020 3.0e-07 58.5 49 55.1
Ciclev10021059m.g Citrus clementina HOM05D000245 ORTHO05D000020 3.0e-07 58.5 63 46.0
PSO407G0293 Papaver somniferum HOM05D000245 ORTHO05D000020 3.0e-07 58.5 55 50.9
BcaB06g29442 Brassica carinata HOM05D000245 ORTHO05D000020 3.9e-07 58.2 52 53.8
Psat6g163880 Pisum sativum HOM05D000245 ORTHO05D000020 3.9e-07 58.2 52 55.8
TPR.G33964 Trifolium pratense HOM05D000245 ORTHO05D000020 3.9e-07 58.2 52 55.8
CARHR142930 Cardamine hirsuta HOM05D000245 ORTHO05D000020 5.1e-07 57.8 54 53.7
Os01g0313300 Oryza sativa ssp. japonica HOM05D000245 ORTHO05D000020 6.6e-07 57.4 60 53.3
Nitab4.5_0002716g0070 Nicotiana tabacum HOM05D000245 ORTHO05D000020 8.7e-07 57.0 59 47.5
Aqoxy2G02880 Aquilegia oxysepala HOM05D000245 ORTHO05D000020 1.1e-06 56.6 58 44.8
Peaxi162Scf00038g02229 Petunia axillaris HOM05D000245 ORTHO05D000020 1.1e-06 56.6 59 45.8
Actinidia26001 Actinidia chinensis HOM05D000245 ORTHO05D000020 1.5e-06 56.2 59 44.1
BcaC02g06980 Brassica carinata HOM05D000245 ORTHO05D000020 1.5e-06 56.2 52 53.8
C04p72870 Brassica napus HOM05D000245 ORTHO05D000020 1.5e-06 56.2 52 53.8
Glyma.02G016100 Glycine max HOM05D000245 ORTHO05D000020 1.5e-06 56.2 52 51.9
Lalb_Chr06g0166561 Lupinus albus HOM05D000245 ORTHO05D000020 1.5e-06 56.2 53 49.1
Nitab4.5_0003987g0060 Nicotiana tabacum HOM05D000245 ORTHO05D000020 1.5e-06 56.2 59 45.8
Nitab4.5_0014197g0010 Nicotiana tabacum HOM05D000245 ORTHO05D000020 1.5e-06 56.2 59 45.8
TAR383G0807 Trochodendron aralioides HOM05D000245 ORTHO05D000020 1.5e-06 56.2 61 45.9
Nitab4.5_0003137g0010 Nicotiana tabacum HOM05D000245 ORTHO05D000020 1.9e-06 55.8 59 45.8
CAN.G790.71 Capsicum annuum HOM05D000245 ORTHO05D000020 2.5e-06 55.5 59 45.8
CDE05G0571 Ceratophyllum demersum HOM05D000245 ORTHO05D000020 2.5e-06 55.5 59 44.1
Peaxi162Scf00207g01542 Petunia axillaris HOM05D000245 ORTHO05D000020 2.5e-06 55.5 60 48.3
CSS0041210 Camellia sinensis var. sinensis HOM05D000245 ORTHO05D000020 3.3e-06 55.1 59 45.8
BolC4t28768H Brassica oleracea HOM05D000245 ORTHO05D000020 5.6e-06 54.3 52 51.9
DCAR_018316 Daucus carota HOM05D000245 ORTHO05D000020 5.6e-06 54.3 54 48.1
Solyc06g063070.3 Solanum lycopersicum HOM05D000245 ORTHO05D000020 5.6e-06 54.3 59 45.8
Sopen06g022520 Solanum pennellii HOM05D000245 ORTHO05D000020 5.6e-06 54.3 59 45.8
CAN.G1743.2 Capsicum annuum HOM05D000245 ORTHO05D000020 7.3e-06 53.9 59 45.8
CDE05G0873 Ceratophyllum demersum HOM05D000245 ORTHO05D000020 7.3e-06 53.9 58 46.6
BraSC79t46687Z Brassica rapa HOM05D000245 ORTHO05D000020 9.6e-06 53.5 52 55.8
Ca_10316_v3 Cicer arietinum L. HOM05D000245 ORTHO05D000020 9.6e-06 53.5 52 50.0
PGSC0003DMG400004898 Solanum tuberosum HOM05D000245 ORTHO05D000020 9.6e-06 53.5 59 44.1


User provided reference genes

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