Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g146320 Amaranthus hybridus HOM05D004966 ORTHO05D006199 2.7e-304 1048.1 645 100.0
AUR62003963 Chenopodium quinoa HOM05D004966 ORTHO05D006199 2.5e-172 609.8 438 71.2
AUR62038275 Chenopodium quinoa HOM05D004966 ORTHO05D006199 4.7e-171 605.5 439 70.8
EL10Ac6g15665 Beta vulgaris HOM05D004966 ORTHO05D006199 6.1e-171 605.1 444 71.6
Hund16378 Selenicereus undatus HOM05D004966 ORTHO05D006199 1.1e-156 557.8 446 64.8
Hma1.2p1_0017F.1_g012040 Hydrangea macrophylla HOM05D004966 ORTHO05D006199 1.3e-152 544.3 445 63.6
Oeu013276.1 Olea europaea HOM05D004966 ORTHO05D006199 4.1e-151 539.3 623 66.6
Actinidia32817 Actinidia chinensis HOM05D004966 ORTHO05D006199 7.3e-148 528.5 446 61.7
Sc16g0004960 Simmondsia chinensis HOM05D004966 ORTHO05D006199 6.2e-147 525.4 445 62.9
Ciclev10024760m.g Citrus clementina HOM05D004966 ORTHO05D006199 8.9e-146 521.5 440 61.1
Dinv30059 Davidia involucrata HOM05D004966 ORTHO05D006199 2.6e-145 520.0 439 61.3
Rhsim08G0096300 Rhododendron simsii HOM05D004966 ORTHO05D006199 3.4e-145 519.6 443 60.9
CiPaw.01G008200 Carya illinoinensis HOM05D004966 ORTHO05D006199 1.7e-144 517.3 444 60.6
Sopen02g037320 Solanum pennellii HOM05D004966 ORTHO05D006199 1.7e-144 517.3 446 60.8
Solyc02g092780.3 Solanum lycopersicum HOM05D004966 ORTHO05D006199 3.7e-144 516.2 446 60.5
Lj4C159G2 Lonicera japonica HOM05D004966 ORTHO05D006199 1.1e-143 514.6 444 60.4
CSS0024631 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 4.1e-143 512.7 445 61.3
Cc07_g06700 Coffea canephora HOM05D004966 ORTHO05D006199 5.4e-143 512.3 443 59.8
Manes.12G112800 Manihot esculenta HOM05D004966 ORTHO05D006199 1.6e-142 510.8 443 59.6
vmacro17983 Vaccinium macrocarpon HOM05D004966 ORTHO05D006199 1.6e-142 510.8 698 49.7
Thecc.01G067600 Theobroma cacao HOM05D004966 ORTHO05D006199 2.1e-142 510.4 451 59.4
Cfa004090 Carpinus fangiana HOM05D004966 ORTHO05D006199 1.0e-141 508.1 442 60.2
Duzib147G1627 Durio zibethinus HOM05D004966 ORTHO05D006199 1.7e-141 507.3 451 59.6
Nitab4.5_0000868g0040 Nicotiana tabacum HOM05D004966 ORTHO05D006199 5.1e-141 505.8 443 59.6
TWI09G0336 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 5.1e-141 505.8 440 59.1
Eucgr.I00728 Eucalyptus grandis HOM05D004966 ORTHO05D006199 6.6e-141 505.4 450 59.1
CAN.G1075.3 Capsicum annuum HOM05D004966 ORTHO05D006199 5.6e-140 502.3 446 59.0
PGR004G2163 Punica granatum HOM05D004966 ORTHO05D006199 5.6e-140 502.3 442 58.8
Nn5g30492 Nelumbo nucifera HOM05D004966 ORTHO05D006199 7.3e-140 501.9 439 59.5
Atru.chr3.210 Acer truncatum HOM05D004966 ORTHO05D006199 2.1e-139 500.4 443 59.8
Prupe.6G225100 Prunus persica HOM05D004966 ORTHO05D006199 2.8e-139 500.0 442 60.0
TWI73G0630 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 6.2e-139 498.8 440 58.9
Nitab4.5_0001439g0170 Nicotiana tabacum HOM05D004966 ORTHO05D006199 8.1e-139 498.4 439 59.7
Sabra07G0045800 Salix brachista HOM05D004966 ORTHO05D006199 1.1e-138 498.0 442 58.4
Potri.007G052200 Populus trichocarpa HOM05D004966 ORTHO05D006199 1.4e-138 497.7 447 57.3
COL.COLO4_11522 Corchorus olitorius HOM05D004966 ORTHO05D006199 2.4e-138 496.9 443 58.9
RcHm_v2.0_Chr2g0107271 Rosa chinensis HOM05D004966 ORTHO05D006199 4.0e-138 496.1 441 59.4
Ca_24712_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 1.2e-137 494.6 441 59.2
Ca_24727_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 1.2e-137 494.6 441 59.2
Aqoxy6G02774 Aquilegia oxysepala HOM05D004966 ORTHO05D006199 4.4e-137 492.7 444 57.4
MD02G1181200 Malus domestica HOM05D004966 ORTHO05D006199 7.6e-137 491.9 441 58.5
Medtr5g016190 Medicago truncatula HOM05D004966 ORTHO05D006199 7.6e-137 491.9 442 57.7
THA.LOC104807611 Tarenaya hassleriana HOM05D004966 ORTHO05D006199 9.9e-137 491.5 446 57.4
Psat2g169880 Pisum sativum HOM05D004966 ORTHO05D006199 1.7e-136 490.7 446 57.4
MD15G1292200 Malus domestica HOM05D004966 ORTHO05D006199 2.2e-136 490.3 441 58.0
GSVIVG01000163001 Vitis vinifera HOM05D004966 ORTHO05D006199 2.9e-136 490.0 444 58.6
Gohir.A11G217900 Gossypium hirsutum HOM05D004966 ORTHO05D006199 4.9e-136 489.2 437 58.6
SGA_v2.0_scaffold15G07400 Striga asiatica HOM05D004966 ORTHO05D006199 4.9e-136 489.2 664 47.6
Glyma.05G102400 Glycine max HOM05D004966 ORTHO05D006199 1.4e-135 487.6 440 58.2
Haze_15324 Corylus avellana HOM05D004966 ORTHO05D006199 1.9e-135 487.3 449 57.7
Glyma.17G164600 Glycine max HOM05D004966 ORTHO05D006199 1.9e-135 487.3 440 58.0
Gorai.007G220700 Gossypium raimondii HOM05D004966 ORTHO05D006199 1.9e-135 487.3 437 58.1
TPR.G20946 Trifolium pratense HOM05D004966 ORTHO05D006199 1.9e-135 487.3 441 57.6
arahy.Tifrunner.gnm1.ann1.E99DR7 Arachis hypogaea HOM05D004966 ORTHO05D006199 1.6e-134 484.2 446 56.3
Lj2g0010110 Lotus japonicus HOM05D004966 ORTHO05D006199 1.6e-134 484.2 440 57.3
BcaNung05081 Brassica carinata HOM05D004966 ORTHO05D006199 2.1e-134 483.8 446 57.6
Gohir.D11G205500 Gossypium hirsutum HOM05D004966 ORTHO05D006199 2.1e-134 483.8 437 57.9
Phvul.002G013932 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 2.7e-134 483.4 442 57.2
Sed0025120 Sechium edule HOM05D004966 ORTHO05D006199 3.5e-134 483.0 446 56.5
TAR625G0217 Trochodendron aralioides HOM05D004966 ORTHO05D006199 1.3e-133 481.1 443 57.1
arahy.Tifrunner.gnm1.ann1.138YHT Arachis hypogaea HOM05D004966 ORTHO05D006199 1.7e-133 480.7 446 55.8
Glyma.01G191100 Glycine max HOM05D004966 ORTHO05D006199 2.3e-133 480.3 442 57.5
VMungo0251G2147 Vigna mungo HOM05D004966 ORTHO05D006199 3.0e-133 479.9 443 57.6
Phvul.003G238000 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 5.1e-133 479.2 438 57.5
CANSAT01G2710 Cannabis sativa HOM05D004966 ORTHO05D006199 1.1e-132 478.0 443 58.2
A01p01480 Brassica napus HOM05D004966 ORTHO05D006199 1.9e-132 477.2 438 57.5
BraA01t00142Z Brassica rapa HOM05D004966 ORTHO05D006199 4.3e-132 476.1 438 57.5
Migut.H00376 Erythranthe guttata HOM05D004966 ORTHO05D006199 1.2e-131 474.6 441 56.2
BcaNung03662 Brassica carinata HOM05D004966 ORTHO05D006199 1.6e-131 474.2 438 57.3
BolC1t00159H Brassica oleracea HOM05D004966 ORTHO05D006199 1.6e-131 474.2 438 57.3
PSO541G4192 Papaver somniferum HOM05D004966 ORTHO05D006199 1.6e-131 474.2 441 56.0
PSO675G4881 Papaver somniferum HOM05D004966 ORTHO05D006199 2.8e-131 473.4 441 56.2
FvH4_1g17100 Fragaria vesca HOM05D004966 ORTHO05D006199 3.6e-131 473.0 446 57.0
FAN19G1580 Fragaria x ananassa HOM05D004966 ORTHO05D006199 3.6e-131 473.0 446 57.0
C01p01650 Brassica napus HOM05D004966 ORTHO05D006199 4.7e-131 472.6 438 57.1
MELO3C007603.2 Cucumis melo HOM05D004966 ORTHO05D006199 8.1e-131 471.9 441 56.5
CsaV3_6G043790 Cucumis sativus L. HOM05D004966 ORTHO05D006199 8.1e-131 471.9 441 56.2
FAN26G1585 Fragaria x ananassa HOM05D004966 ORTHO05D006199 1.1e-130 471.5 446 56.7
DCAR_010836 Daucus carota HOM05D004966 ORTHO05D006199 1.4e-130 471.1 446 56.5
Aa31LG6G14330 Aethionema arabicum HOM05D004966 ORTHO05D006199 1.8e-130 470.7 446 56.5
Carub.0007s0282 Capsella rubella HOM05D004966 ORTHO05D006199 2.4e-130 470.3 446 56.7
Lj4g0015306 Lotus japonicus HOM05D004966 ORTHO05D006199 3.1e-130 469.9 440 55.9
MBI16_g06665_MAGBIO Magnolia biondii HOM05D004966 ORTHO05D006199 3.1e-130 469.9 583 52.1
Lalb_Chr05g0226061 Lupinus albus HOM05D004966 ORTHO05D006199 1.5e-129 467.6 439 56.5
AL7G13330 Arabidopsis lyrata HOM05D004966 ORTHO05D006199 3.4e-129 466.5 440 56.1
MSTRG.23699 Avicennia marina HOM05D004966 ORTHO05D006199 9.9e-129 464.9 435 55.4
FAN28G1348 Fragaria x ananassa HOM05D004966 ORTHO05D006199 2.2e-128 463.8 445 56.2
ECA238G2979 Erigeron canadensis HOM05D004966 ORTHO05D006199 6.4e-128 462.2 446 54.3
CARHR245860 Cardamine hirsuta HOM05D004966 ORTHO05D006199 1.6e-126 457.6 443 55.8
Lsat_1_v5_gn_2_83581 Lactuca sativa HOM05D004966 ORTHO05D006199 4.3e-124 449.5 445 54.2
arahy.Tifrunner.gnm1.ann1.EHFU3U Arachis hypogaea HOM05D004966 ORTHO05D006199 3.6e-123 446.4 438 54.6
HanXRQChr14g0441841 Helianthus annuus HOM05D004966 ORTHO05D006199 4.0e-122 443.0 443 53.0
arahy.Tifrunner.gnm1.ann1.E3XCDG Arachis hypogaea HOM05D004966 ORTHO05D006199 9.0e-122 441.8 438 53.9
CSS0020625 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.2e-121 441.4 409 57.0
Peaxi162Scf00264g00044 Petunia axillaris HOM05D004966 ORTHO05D006199 4.5e-121 439.5 439 54.9
AT4G37460 Arabidopsis thaliana HOM05D004966 ORTHO05D006199 7.6e-121 438.7 449 52.6
SEGI_23316 Sequoiadendron giganteum HOM05D004966 ORTHO05D006199 8.1e-115 418.7 441 49.9
ClCG01G017250 Citrullus lanatus HOM05D004966 ORTHO05D006199 3.1e-114 416.8 440 52.5
Duzib187G0681 Durio zibethinus HOM05D004966 ORTHO05D006199 4.0e-114 416.4 439 52.6
Os07g0113700 Oryza sativa ssp. japonica HOM05D004966 ORTHO05D006199 9.6e-108 395.2 440 51.1
Zm00001eb118220 Zea mays HOM05D004966 ORTHO05D006199 1.1e-106 391.7 444 50.0
ATR0661G243 Amborella trichopoda HOM05D004966 ORTHO05D006199 3.4e-105 386.7 440 48.9
Thhalv10024286m.g Eutrema salsugineum HOM05D004966 ORTHO05D006199 4.1e-98 363.2 324 59.9
TAR381G1622 Trochodendron aralioides HOM05D004966 ORTHO05D006199 6.9e-98 362.5 318 58.8
unitig_62.g23418 Utricularia gibba HOM05D004966 ORTHO05D006199 2.9e-88 330.5 439 43.3
Pp3c2_36070 Physcomitrium patens HOM05D004966 ORTHO05D006199 7.7e-81 305.8 604 46.5
Lalb_Chr16g0389071 Lupinus albus HOM05D004966 ORTHO05D006199 1.1e-79 302.0 218 69.7
Mapoly0153s0004 Marchantia polymorpha HOM05D004966 ORTHO05D006199 2.2e-72 277.7 442 38.5
BcaNung02943 Brassica carinata HOM05D004966 ORTHO05D006199 9.1e-66 255.8 327 45.3
CBR_g36368 Chara braunii HOM05D004966 ORTHO05D006199 1.7e-48 198.4 489 29.4
Dinv26891 Davidia involucrata HOM05D004966 ORTHO05D006199 4.7e-46 190.3 206 49.5
BolC7t46655H Brassica oleracea HOM05D004966 ORTHO05D006199 3.4e-44 184.1 434 32.7
Sp7g35120 Schrenkiella parvula HOM05D004966 ORTHO05D006199 1.2e-41 175.6 110 77.3
Cpa.g.sc6.60 Carica papaya HOM05D004966 ORTHO05D006199 8.6e-40 169.5 99 80.8
Lalb_Chr16g0389061 Lupinus albus HOM05D004966 ORTHO05D006199 2.1e-38 164.9 166 50.0
Duzib264G0118 Durio zibethinus HOM05D004966 ORTHO05D006199 1.3e-35 155.6 317 37.2
CSS0022043 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 5.4e-34 150.2 111 68.5
C07p62400 Brassica napus HOM05D004966 ORTHO05D006199 2.3e-32 144.8 303 35.3
Cre01.g021450 Chlamydomonas reinhardtii HOM05D004966 ORTHO05D006199 1.2e-30 139.0 438 27.4
Cpa.g.sc1082.1 Carica papaya HOM05D004966 ORTHO05D006199 4.6e-25 120.6 64 78.1
BcaNung02944 Brassica carinata HOM05D004966 ORTHO05D006199 8.9e-21 106.3 137 43.1
CAN.G1075.4 Capsicum annuum HOM05D004966 ORTHO05D006199 2.5e-15 88.2 57 73.7
CAN.G1823.3 Capsicum annuum HOM05D004966 ORTHO05D017532 2.5e-15 88.2 57 73.7
CSS0044835 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D017532 7.3e-15 86.7 55 69.1
CSS0002033 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 1.4e-13 82.4 54 66.7
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 3.5e-09 67.8 48 62.5
CSS0019148 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 8.7e-08 63.2 41 70.7
Lsat_1_v5_gn_8_118440 Lactuca sativa HOM05D004966 ORTHO05D231273 1.1e-07 62.8 49 49.0
CSS0006661 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 3.3e-07 61.2 31 80.6
Oeu011609.3 Olea europaea HOM05D004966 ORTHO05D006199 1.6e-06 58.9 36 66.7
CSS0024681 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 2.8e-06 58.2 43 69.8


User provided reference genes

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