Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g142840 Amaranthus hybridus HOM05D004017 ORTHO05D004612 3.0e-66 255.0 126 100.0
AUR62002051 Chenopodium quinoa HOM05D004017 ORTHO05D004612 1.4e-26 123.2 284 33.1
AUR62003744 Chenopodium quinoa HOM05D004017 ORTHO05D004612 3.8e-24 115.2 277 32.5
Hund03598 Selenicereus undatus HOM05D004017 ORTHO05D004612 1.7e-21 106.3 278 30.6
vmacro20628 Vaccinium macrocarpon HOM05D004017 ORTHO05D004612 7.6e-17 90.9 225 29.3
TAR628G0604 Trochodendron aralioides HOM05D004017 ORTHO05D004612 1.1e-15 87.0 118 39.8
Actinidia22894 Actinidia chinensis HOM05D004017 ORTHO05D004612 5.4e-15 84.7 118 39.8
Rhsim10G0195200 Rhododendron simsii HOM05D004017 ORTHO05D004612 6.0e-14 81.3 119 37.8
Ca_24985_v3 Cicer arietinum L. HOM05D004017 ORTHO05D004612 1.0e-13 80.5 128 39.1
Dinv28321 Davidia involucrata HOM05D004017 ORTHO05D004612 1.0e-13 80.5 121 39.7
Solyc02g082660.3 Solanum lycopersicum HOM05D004017 ORTHO05D004612 1.0e-13 80.5 117 41.0
Sopen02g027400 Solanum pennellii HOM05D004017 ORTHO05D004612 1.0e-13 80.5 117 41.0
CSS0022647 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 3.0e-13 79.0 120 39.2
CSS0031153 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 3.0e-13 79.0 120 39.2
CSS0034748 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 3.0e-13 79.0 120 39.2
Atru.chr3.129 Acer truncatum HOM05D004017 ORTHO05D004612 5.1e-13 78.2 120 37.5
arahy.Tifrunner.gnm1.ann1.IMTK78 Arachis hypogaea HOM05D004017 ORTHO05D004612 5.1e-13 78.2 121 41.3
Lalb_Chr16g0380061 Lupinus albus HOM05D004017 ORTHO05D004612 5.1e-13 78.2 280 24.6
CSS0019676 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 6.6e-13 77.8 120 39.2
Peaxi162Scf00121g02447 Petunia axillaris HOM05D004017 ORTHO05D004612 6.6e-13 77.8 115 40.0
Sc03g0003980 Simmondsia chinensis HOM05D004017 ORTHO05D004612 6.6e-13 77.8 66 60.6
Carub.0007s0480 Capsella rubella HOM05D004017 ORTHO05D004612 1.1e-12 77.0 119 40.3
CiPaw.07G002300 Carya illinoinensis HOM05D004017 ORTHO05D004612 1.1e-12 77.0 117 36.8
Lj2g0020546 Lotus japonicus HOM05D004017 ORTHO05D004612 1.1e-12 77.0 126 40.5
Potri.005G101900 Populus trichocarpa HOM05D004017 ORTHO05D004612 1.1e-12 77.0 126 38.1
Duzib147G1448 Durio zibethinus HOM05D004017 ORTHO05D004612 1.5e-12 76.6 118 36.4
Manes.02G114300 Manihot esculenta HOM05D004017 ORTHO05D004612 1.5e-12 76.6 119 36.1
CAN.G1238.14 Capsicum annuum HOM05D004017 ORTHO05D004612 1.9e-12 76.3 118 41.5
CSS0016610 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 2.5e-12 75.9 120 38.3
CARHR243850 Cardamine hirsuta HOM05D004017 ORTHO05D004612 3.3e-12 75.5 117 38.5
Glyma.01G158400 Glycine max HOM05D004017 ORTHO05D004612 3.3e-12 75.5 129 35.7
GSVIVG01026635001 Vitis vinifera HOM05D004017 ORTHO05D004612 3.3e-12 75.5 118 38.1
Cc07_g11910 Coffea canephora HOM05D004017 ORTHO05D004612 4.3e-12 75.1 118 39.0
TPR.G33889 Trifolium pratense HOM05D004017 ORTHO05D004612 4.3e-12 75.1 132 37.1
MD02G1114700 Malus domestica HOM05D004017 ORTHO05D004612 5.6e-12 74.7 119 37.8
Nitab4.5_0001467g0030 Nicotiana tabacum HOM05D004017 ORTHO05D004612 5.6e-12 74.7 116 37.9
QL06p053019 Quercus lobata HOM05D004017 ORTHO05D004612 7.4e-12 74.3 118 35.6
Sabra05G0084300 Salix brachista HOM05D004017 ORTHO05D004612 7.4e-12 74.3 125 37.6
Cpa.g.sc6.367 Carica papaya HOM05D004017 ORTHO05D004612 9.6e-12 73.9 121 38.8
COL.COLO4_22554 Corchorus olitorius HOM05D004017 ORTHO05D004612 1.3e-11 73.6 115 37.4
Gohir.A02G178100 Gossypium hirsutum HOM05D004017 ORTHO05D004612 1.3e-11 73.6 118 37.3
Gohir.D03G001700 Gossypium hirsutum HOM05D004017 ORTHO05D004612 1.3e-11 73.6 118 37.3
Gorai.003G002000 Gossypium raimondii HOM05D004017 ORTHO05D004612 1.3e-11 73.6 118 37.3
Medtr5g024250 Medicago truncatula HOM05D004017 ORTHO05D004612 1.3e-11 73.6 127 37.0
TAR628G0231 Trochodendron aralioides HOM05D004017 ORTHO05D004612 1.3e-11 73.6 67 55.2
MD15G1230600 Malus domestica HOM05D004017 ORTHO05D004612 1.6e-11 73.2 56 58.9
Nitab4.5_0004608g0030 Nicotiana tabacum HOM05D004017 ORTHO05D004612 1.6e-11 73.2 116 37.1
AL7G15650 Arabidopsis lyrata HOM05D004017 ORTHO05D004612 2.1e-11 72.8 119 37.8
PSO541G0703 Papaver somniferum HOM05D004017 ORTHO05D004612 2.1e-11 72.8 115 37.4
DCAR_016694 Daucus carota HOM05D004017 ORTHO05D004612 2.8e-11 72.4 124 41.1
AT4G35520 Arabidopsis thaliana HOM05D004017 ORTHO05D004612 3.6e-11 72.0 119 37.8
Thhalv10024245m.g Eutrema salsugineum HOM05D004017 ORTHO05D004612 3.6e-11 72.0 119 38.7
TWI09G1144 Tripterygium wilfordii HOM05D004017 ORTHO05D004612 3.6e-11 72.0 58 55.2
HanXRQChr14g0442551 Helianthus annuus HOM05D004017 ORTHO05D004612 4.8e-11 71.6 64 54.7
Nn6g31689 Nelumbo nucifera HOM05D004017 ORTHO05D004612 4.8e-11 71.6 66 56.1
Psat2g148040 Pisum sativum HOM05D004017 ORTHO05D004612 6.2e-11 71.2 131 36.6
Aa31LG6G12480 Aethionema arabicum HOM05D004017 ORTHO05D004612 1.4e-10 70.1 114 39.5
Ciclev10024702m.g Citrus clementina HOM05D004017 ORTHO05D004612 1.8e-10 69.7 113 40.7
Eucgr.J02538 Eucalyptus grandis HOM05D004017 ORTHO05D004612 1.8e-10 69.7 63 58.7
Prupe.7G183500 Prunus persica HOM05D004017 ORTHO05D004612 1.8e-10 69.7 121 36.4
CSS0018094 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 2.4e-10 69.3 65 49.2
Thecc.01G005000 Theobroma cacao HOM05D004017 ORTHO05D004612 2.4e-10 69.3 120 35.8
ATR0807G175 Amborella trichopoda HOM05D004017 ORTHO05D004612 3.1e-10 68.9 117 34.2
C07p61210 Brassica napus HOM05D004017 ORTHO05D004612 3.1e-10 68.9 122 35.2
BolC7t46547H Brassica oleracea HOM05D004017 ORTHO05D004612 4.0e-10 68.6 120 35.8
CSS0016202 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 4.0e-10 68.6 65 49.2
CSS0016684 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 4.0e-10 68.6 65 49.2
CSS0024207 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 4.0e-10 68.6 65 49.2
CSS0032900 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 4.0e-10 68.6 65 49.2
arahy.Tifrunner.gnm1.ann1.4CZ79I Arachis hypogaea HOM05D004017 ORTHO05D004612 5.3e-10 68.2 59 52.5
arahy.Tifrunner.gnm1.ann1.FZX4ED Arachis hypogaea HOM05D004017 ORTHO05D004612 5.3e-10 68.2 59 52.5
FvH4_1g10270 Fragaria vesca HOM05D004017 ORTHO05D004612 5.3e-10 68.2 121 36.4
Hma1.2p1_0300F.1_g117960 Hydrangea macrophylla HOM05D004017 ORTHO05D004612 5.3e-10 68.2 118 34.7
Oeu045735.2 Olea europaea HOM05D004017 ORTHO05D004612 5.3e-10 68.2 67 56.7
A03p63640 Brassica napus HOM05D004017 ORTHO05D004612 6.9e-10 67.8 119 36.1
BraA03t15435Z Brassica rapa HOM05D004017 ORTHO05D004612 6.9e-10 67.8 119 36.1
FAN26G0543 Fragaria x ananassa HOM05D004017 ORTHO05D004612 6.9e-10 67.8 121 36.4
Phvul.002G116900 Phaseolus vulgaris HOM05D004017 ORTHO05D004612 6.9e-10 67.8 132 33.3
Sp7g33300 Schrenkiella parvula HOM05D004017 ORTHO05D004612 6.9e-10 67.8 113 38.1
CSS0016280 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 9.0e-10 67.4 65 49.2
ECA238G2486 Erigeron canadensis HOM05D004017 ORTHO05D004612 9.0e-10 67.4 122 34.4
Lj2A500T36 Lonicera japonica HOM05D004017 ORTHO05D004612 9.0e-10 67.4 73 56.2
MELO3C013715.2 Cucumis melo HOM05D004017 ORTHO05D004612 1.2e-09 67.0 121 36.4
FAN19G1215 Fragaria x ananassa HOM05D004017 ORTHO05D004612 1.2e-09 67.0 118 39.0
RcHm_v2.0_Chr2g0097091 Rosa chinensis HOM05D004017 ORTHO05D004612 1.2e-09 67.0 61 54.1
CSS0017200 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 1.5e-09 66.6 65 47.7
Aqoxy6G01621 Aquilegia oxysepala HOM05D004017 ORTHO05D004612 2.0e-09 66.2 57 57.9
PGR142G4352 Punica granatum HOM05D004017 ORTHO05D004612 2.0e-09 66.2 59 61.0
SGA_v2.0_scaffold61G21182 Striga asiatica HOM05D004017 ORTHO05D004612 2.6e-09 65.9 87 43.7
HPP92_020507 Vanilla planifolia HOM05D004017 ORTHO05D004612 2.6e-09 65.9 119 31.9
FAN23G1226 Fragaria x ananassa HOM05D004017 ORTHO05D004612 4.5e-09 65.1 59 55.9
FAN28G2227 Fragaria x ananassa HOM05D004017 ORTHO05D004612 4.5e-09 65.1 121 34.7
THA.LOC104819715 Tarenaya hassleriana HOM05D004017 ORTHO05D004612 4.5e-09 65.1 120 35.8
Sed0025898 Sechium edule HOM05D004017 ORTHO05D004612 7.6e-09 64.3 121 34.7
Os09g0551900 Oryza sativa ssp. japonica HOM05D004017 ORTHO05D004612 1.3e-08 63.5 121 33.1
Lsat_1_v5_gn_2_73681 Lactuca sativa HOM05D004017 ORTHO05D004612 1.7e-08 63.2 61 55.7
VMungo1215G1547 Vigna mungo HOM05D004017 ORTHO05D004612 1.7e-08 63.2 66 56.1
CDE06G0086 Ceratophyllum demersum HOM05D004017 ORTHO05D004612 2.2e-08 62.8 55 56.4
CANSAT25G1082 Cannabis sativa HOM05D004017 ORTHO05D004612 2.9e-08 62.4 63 49.2
Migut.L00849 Erythranthe guttata HOM05D004017 ORTHO05D004612 2.9e-08 62.4 113 33.6
Migut.L00851 Erythranthe guttata HOM05D004017 ORTHO05D004612 2.9e-08 62.4 118 33.1
CsaV3_3G000200 Cucumis sativus L. HOM05D004017 ORTHO05D004612 3.8e-08 62.0 59 57.6
SHI29525 Sapria himalayana HOM05D004017 ORTHO05D004612 4.9e-08 61.6 61 54.1
ClCG10G000180 Citrullus lanatus HOM05D004017 ORTHO05D004612 6.4e-08 61.2 59 52.5
arahy.Tifrunner.gnm1.ann1.0EHY87 Arachis hypogaea HOM05D004017 ORTHO05D004612 8.4e-08 60.8 44 65.9
Zm00001eb104330 Zea mays HOM05D004017 ORTHO05D004612 1.9e-07 59.7 57 49.1
Zm00001eb104340 Zea mays HOM05D004017 ORTHO05D004612 1.9e-07 59.7 57 49.1
Zm00001eb104360 Zea mays HOM05D004017 ORTHO05D004612 1.9e-07 59.7 57 49.1
Lsat_1_v5_gn_5_57160 Lactuca sativa HOM05D004017 ORTHO05D004612 2.4e-07 59.3 61 52.5
CSS0002700 Camellia sinensis var. sinensis HOM05D004017 ORTHO05D004612 3.2e-07 58.9 62 43.5
SHI29523 Sapria himalayana HOM05D004017 ORTHO05D004612 1.6e-06 56.6 62 48.4
Mapoly0006s0222 Marchantia polymorpha HOM05D004017 ORTHO05D004612 3.5e-06 55.5 60 46.7
unitig_747.g21784 Utricularia gibba HOM05D004017 ORTHO05D004612 4.6e-06 55.1 62 48.4


User provided reference genes

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