Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g137740 Amaranthus hybridus HOM05D000595 ORTHO05D026496 1.4e-26 122.5 77 100.0
Cpa.g.sc1.180 Carica papaya HOM05D000595 ORTHO05D001274 1.1e-15 86.3 53 75.5
Sc04g0006470 Simmondsia chinensis HOM05D000595 ORTHO05D001274 2.5e-15 85.1 51 80.4
Thecc.02G356000 Theobroma cacao HOM05D000595 ORTHO05D001274 2.5e-15 85.1 51 76.5
AUR62035240 Chenopodium quinoa HOM05D000595 ORTHO05D001274 5.7e-15 84.0 51 80.4
AUR62002880 Chenopodium quinoa HOM05D000595 ORTHO05D001274 7.4e-15 83.6 47 87.2
Duzib268G0359 Durio zibethinus HOM05D000595 ORTHO05D001274 7.4e-15 83.6 51 74.5
Lalb_Chr10g0099981 Lupinus albus HOM05D000595 ORTHO05D001274 7.4e-15 83.6 51 76.5
Hund25069 Selenicereus undatus HOM05D000595 ORTHO05D001274 7.4e-15 83.6 51 78.4
Manes.14G101700 Manihot esculenta HOM05D000595 ORTHO05D001274 1.3e-14 82.8 50 76.0
AT1G68560 Arabidopsis thaliana HOM05D000595 ORTHO05D001274 4.8e-14 80.9 50 74.0
EL10Ac6g14425 Beta vulgaris HOM05D000595 ORTHO05D001274 1.1e-13 79.7 44 86.4
TWI79G1486 Tripterygium wilfordii HOM05D000595 ORTHO05D001274 1.1e-13 79.7 54 70.4
VMungo0251G1866 Vigna mungo HOM05D000595 ORTHO05D001274 1.1e-13 79.7 51 72.5
Gohir.D12G170900 Gossypium hirsutum HOM05D000595 ORTHO05D001274 1.4e-13 79.3 48 77.1
Gorai.008G183500 Gossypium raimondii HOM05D000595 ORTHO05D001274 1.4e-13 79.3 48 77.1
Manes.06G069200 Manihot esculenta HOM05D000595 ORTHO05D001274 1.4e-13 79.3 50 74.0
Phvul.003G035400 Phaseolus vulgaris HOM05D000595 ORTHO05D001274 1.4e-13 79.3 51 72.5
Carub.0002s1508 Capsella rubella HOM05D000595 ORTHO05D001274 5.3e-13 77.4 50 72.0
COL.COLO4_07916 Corchorus olitorius HOM05D000595 ORTHO05D001274 5.3e-13 77.4 54 68.5
Duzib251G0431 Durio zibethinus HOM05D000595 ORTHO05D001274 6.9e-13 77.0 43 79.1
Potri.008G120000 Populus trichocarpa HOM05D000595 ORTHO05D001274 6.9e-13 77.0 50 70.0
AL2G27460 Arabidopsis lyrata HOM05D000595 ORTHO05D001274 9.1e-13 76.6 42 81.0
BcaB03g15841 Brassica carinata HOM05D000595 ORTHO05D001274 9.1e-13 76.6 42 81.0
Thhalv10018090m.g Eutrema salsugineum HOM05D000595 ORTHO05D001274 9.1e-13 76.6 42 81.0
Glyma.08G262800 Glycine max HOM05D000595 ORTHO05D001274 9.1e-13 76.6 51 68.6
Sp5g23650 Schrenkiella parvula HOM05D000595 ORTHO05D001274 9.1e-13 76.6 42 81.0
BcaC03g14968 Brassica carinata HOM05D000595 ORTHO05D001274 1.2e-12 76.3 50 72.0
Aa31LG5G9570 Aethionema arabicum HOM05D000595 ORTHO05D001274 1.5e-12 75.9 49 73.5
BcaB05g24397 Brassica carinata HOM05D000595 ORTHO05D001274 1.5e-12 75.9 50 68.0
A02p15170 Brassica napus HOM05D000595 ORTHO05D001274 1.5e-12 75.9 50 68.0
BraA02t06582Z Brassica rapa HOM05D000595 ORTHO05D001274 1.5e-12 75.9 50 68.0
BcaC08g46296 Brassica carinata HOM05D000595 ORTHO05D001274 2.0e-12 75.5 42 78.6
A07p34950 Brassica napus HOM05D000595 ORTHO05D001274 2.0e-12 75.5 42 78.6
C02p24920 Brassica napus HOM05D000595 ORTHO05D001274 2.0e-12 75.5 42 78.6
C06p41360 Brassica napus HOM05D000595 ORTHO05D001274 2.0e-12 75.5 42 78.6
BolC2t08583H Brassica oleracea HOM05D000595 ORTHO05D001274 2.0e-12 75.5 42 78.6
BolC6t39288H Brassica oleracea HOM05D000595 ORTHO05D001274 2.0e-12 75.5 42 78.6
Gohir.A11G320100 Gossypium hirsutum HOM05D000595 ORTHO05D001274 2.0e-12 75.5 48 72.9
Gohir.D11G339200 Gossypium hirsutum HOM05D000595 ORTHO05D001274 2.0e-12 75.5 48 72.9
Gorai.007G368700 Gossypium raimondii HOM05D000595 ORTHO05D001274 2.0e-12 75.5 48 72.9
Manes.06G069100 Manihot esculenta HOM05D000595 ORTHO05D001274 2.6e-12 75.1 48 72.9
THA.LOC104821941 Tarenaya hassleriana HOM05D000595 ORTHO05D001274 2.6e-12 75.1 51 70.6
Lj2g0014303 Lotus japonicus HOM05D000595 ORTHO05D001274 4.5e-12 74.3 50 66.0
Sabra10G0095600 Salix brachista HOM05D000595 ORTHO05D001274 4.5e-12 74.3 50 70.0
RcHm_v2.0_Chr4g0435281 Rosa chinensis HOM05D000595 ORTHO05D001274 5.9e-12 73.9 54 64.8
CARHR061350 Cardamine hirsuta HOM05D000595 ORTHO05D001274 7.7e-12 73.6 42 76.2
Ca_05208_v3 Cicer arietinum L. HOM05D000595 ORTHO05D001274 7.7e-12 73.6 51 64.7
MELO3C011570.2 Cucumis melo HOM05D000595 ORTHO05D001274 7.7e-12 73.6 75 54.7
Glyma.01G081300 Glycine max HOM05D000595 ORTHO05D001274 7.7e-12 73.6 47 70.2
Gohir.D13G067000 Gossypium hirsutum HOM05D000595 ORTHO05D001274 7.7e-12 73.6 51 64.7
Gorai.013G076300 Gossypium raimondii HOM05D000595 ORTHO05D001274 7.7e-12 73.6 51 64.7
CsaV3_6G003480 Cucumis sativus L. HOM05D000595 ORTHO05D001274 1.0e-11 73.2 50 74.0
BcaB03g15426 Brassica carinata HOM05D000595 ORTHO05D001274 1.3e-11 72.8 42 78.6
BcaC08g45964 Brassica carinata HOM05D000595 ORTHO05D001274 1.3e-11 72.8 42 78.6
A07p31950 Brassica napus HOM05D000595 ORTHO05D001274 1.3e-11 72.8 42 78.6
C06p37540 Brassica napus HOM05D000595 ORTHO05D001274 1.3e-11 72.8 42 78.6
BolC6t38856H Brassica oleracea HOM05D000595 ORTHO05D001274 1.3e-11 72.8 42 78.6
DCAR_007240 Daucus carota HOM05D000595 ORTHO05D001274 1.3e-11 72.8 44 75.0
Hma1.2p1_0061F.1_g034030 Hydrangea macrophylla HOM05D000595 ORTHO05D001274 1.3e-11 72.8 44 70.5
Sabra08G0091000 Salix brachista HOM05D000595 ORTHO05D001274 1.3e-11 72.8 50 68.0
arahy.Tifrunner.gnm1.ann1.D1W91V Arachis hypogaea HOM05D000595 ORTHO05D001274 1.7e-11 72.4 50 66.0
arahy.Tifrunner.gnm1.ann1.V2N30X Arachis hypogaea HOM05D000595 ORTHO05D001274 1.7e-11 72.4 50 66.0
BraA07t30823Z Brassica rapa HOM05D000595 ORTHO05D001274 1.7e-11 72.4 42 76.2
Rhsim12G0083200 Rhododendron simsii HOM05D000595 ORTHO05D001274 1.7e-11 72.4 43 72.1
CSS0038244 Camellia sinensis var. sinensis HOM05D000595 ORTHO05D001274 2.2e-11 72.0 53 62.3
DCAR_023662 Daucus carota HOM05D000595 ORTHO05D001274 2.2e-11 72.0 44 70.5
Lj2g0001426 Lotus japonicus HOM05D000595 ORTHO05D001274 2.2e-11 72.0 46 69.6
Lalb_Chr04g0254751 Lupinus albus HOM05D000595 ORTHO05D001274 2.9e-11 71.6 50 68.0
TPR.G27807 Trifolium pratense HOM05D000595 ORTHO05D001274 2.9e-11 71.6 51 60.8
Actinidia13663 Actinidia chinensis HOM05D000595 ORTHO05D001274 3.8e-11 71.2 51 62.7
MD13G1042700 Malus domestica HOM05D000595 ORTHO05D001274 3.8e-11 71.2 53 62.3
Actinidia38371 Actinidia chinensis HOM05D000595 ORTHO05D001274 6.5e-11 70.5 51 62.7
Medtr5g057990 Medicago truncatula HOM05D000595 ORTHO05D001274 6.5e-11 70.5 50 64.0
Solyc05g009470.4 Solanum lycopersicum HOM05D000595 ORTHO05D001274 6.5e-11 70.5 44 68.2
Sopen05g005270 Solanum pennellii HOM05D000595 ORTHO05D001274 6.5e-11 70.5 44 68.2
CANSAT01G0742 Cannabis sativa HOM05D000595 ORTHO05D001274 8.5e-11 70.1 58 60.3
Dinv21095 Davidia involucrata HOM05D000595 ORTHO05D001274 8.5e-11 70.1 50 64.0
Lj6A759T77 Lonicera japonica HOM05D000595 ORTHO05D001274 8.5e-11 70.1 50 64.0
ClCG08G005300 Citrullus lanatus HOM05D000595 ORTHO05D001274 1.1e-10 69.7 44 75.0
Potri.010G125800 Populus trichocarpa HOM05D000595 ORTHO05D001274 1.1e-10 69.7 50 64.0
vmacro01377 Vaccinium macrocarpon HOM05D000595 ORTHO05D001274 1.4e-10 69.3 43 69.8
CSS0010238 Camellia sinensis var. sinensis HOM05D000595 ORTHO05D001274 1.9e-10 68.9 51 60.8
CSS0016368 Camellia sinensis var. sinensis HOM05D000595 ORTHO05D001274 1.9e-10 68.9 51 60.8
CiPaw.16G064500 Carya illinoinensis HOM05D000595 ORTHO05D001274 1.9e-10 68.9 43 72.1
DCAR_026731 Daucus carota HOM05D000595 ORTHO05D001274 1.9e-10 68.9 52 57.7
Hma1.2p1_0189F.1_g082510 Hydrangea macrophylla HOM05D000595 ORTHO05D001274 1.9e-10 68.9 44 68.2
Nitab4.5_0000874g0110 Nicotiana tabacum HOM05D000595 ORTHO05D001274 1.9e-10 68.9 43 67.4
Oeu035418.1 Olea europaea HOM05D000595 ORTHO05D001274 1.9e-10 68.9 44 63.6
TPR.G26317 Trifolium pratense HOM05D000595 ORTHO05D001274 1.9e-10 68.9 52 57.7
TAR629G2146 Trochodendron aralioides HOM05D000595 ORTHO05D001274 1.9e-10 68.9 44 68.2
Lj3g0011539 Lotus japonicus HOM05D000595 ORTHO05D001274 2.5e-10 68.6 48 66.7
Lj5g0022276 Lotus japonicus HOM05D000595 ORTHO05D001274 2.5e-10 68.6 51 58.8
PGSC0003DMG400014540 Solanum tuberosum HOM05D000595 ORTHO05D001274 2.5e-10 68.6 44 65.9
CiPaw.15G084100 Carya illinoinensis HOM05D000595 ORTHO05D001274 3.2e-10 68.2 44 70.5
Medtr1g111000 Medicago truncatula HOM05D000595 ORTHO05D001274 3.2e-10 68.2 53 62.3
Psat0s3342g0160 Pisum sativum HOM05D000595 ORTHO05D001274 3.2e-10 68.2 52 59.6
AL5G24630 Arabidopsis lyrata HOM05D000595 ORTHO05D001274 4.2e-10 67.8 43 69.8
CAN.G656.15 Capsicum annuum HOM05D000595 ORTHO05D001274 4.2e-10 67.8 44 63.6
FvH4_4g27500 Fragaria vesca HOM05D000595 ORTHO05D001274 4.2e-10 67.8 42 73.8
FAN07G0189 Fragaria x ananassa HOM05D000595 ORTHO05D001274 4.2e-10 67.8 42 73.8
FAN07G0687 Fragaria x ananassa HOM05D000595 ORTHO05D001274 4.2e-10 67.8 42 73.8
FAN12G2275 Fragaria x ananassa HOM05D000595 ORTHO05D001274 4.2e-10 67.8 42 73.8
FAN12G3023 Fragaria x ananassa HOM05D000595 ORTHO05D001274 4.2e-10 67.8 42 73.8
FAN22G0384 Fragaria x ananassa HOM05D000595 ORTHO05D001274 4.2e-10 67.8 42 73.8
HanXRQChr08g0213821 Helianthus annuus HOM05D000595 ORTHO05D001274 4.2e-10 67.8 44 65.9
SalBow8G0212 Salvia bowleyana HOM05D000595 ORTHO05D001274 4.2e-10 67.8 43 67.4
SalBow8G2263 Salvia bowleyana HOM05D000595 ORTHO05D001274 4.2e-10 67.8 43 67.4
Hund05753 Selenicereus undatus HOM05D000595 ORTHO05D001274 4.2e-10 67.8 51 60.8
Cc11_g10230 Coffea canephora HOM05D000595 ORTHO05D001274 5.5e-10 67.4 44 65.9
Cc11_g10240 Coffea canephora HOM05D000595 ORTHO05D001274 5.5e-10 67.4 44 65.9
Medtr1g110980 Medicago truncatula HOM05D000595 ORTHO05D001274 5.5e-10 67.4 48 62.5
Nn3g17822 Nelumbo nucifera HOM05D000595 ORTHO05D001274 5.5e-10 67.4 44 65.9
Oeu043865.1 Olea europaea HOM05D000595 ORTHO05D001274 5.5e-10 67.4 47 63.8
SGA_v2.0_scaffold14G06856 Striga asiatica HOM05D000595 ORTHO05D001274 5.5e-10 67.4 44 68.2
CAN.G439.41 Capsicum annuum HOM05D000595 ORTHO05D001274 7.2e-10 67.0 48 58.3
Lsat_1_v5_gn_4_17961 Lactuca sativa HOM05D000595 ORTHO05D001274 7.2e-10 67.0 51 60.8
MD16G1043700 Malus domestica HOM05D000595 ORTHO05D001274 7.2e-10 67.0 53 54.7
Prupe.1G309900 Prunus persica HOM05D000595 ORTHO05D001274 7.2e-10 67.0 54 57.4
Atru.chr11.1273 Acer truncatum HOM05D000595 ORTHO05D001274 9.4e-10 66.6 50 62.0
GSVIVG01011904001 Vitis vinifera HOM05D000595 ORTHO05D001274 9.4e-10 66.6 43 69.8
AT3G45940 Arabidopsis thaliana HOM05D000595 ORTHO05D001274 1.2e-09 66.2 43 69.8
Oeu039273.1 Olea europaea HOM05D000595 ORTHO05D001274 1.2e-09 66.2 47 61.7
Hma1.2p1_2707F.1_g327190 Hydrangea macrophylla HOM05D000595 ORTHO05D001274 1.6e-09 65.9 44 65.9
Hma1.2p1_2707F.1_g327210 Hydrangea macrophylla HOM05D000595 ORTHO05D026496 1.6e-09 65.9 44 63.6
MBI10_g16028_MAGBIO Magnolia biondii HOM05D000595 ORTHO05D001274 1.6e-09 65.9 52 57.7
Nitab4.5_0000057g0290 Nicotiana tabacum HOM05D000595 ORTHO05D001274 1.6e-09 65.9 43 62.8
Nitab4.5_0006400g0010 Nicotiana tabacum HOM05D000595 ORTHO05D001274 1.6e-09 65.9 43 62.8
Psat0s3342g0120 Pisum sativum HOM05D000595 ORTHO05D001274 1.6e-09 65.9 51 56.9
QL04p034054 Quercus lobata HOM05D000595 ORTHO05D001274 1.6e-09 65.9 44 65.9
QL04p034036 Quercus lobata HOM05D000595 ORTHO05D001274 2.1e-09 65.5 51 58.8
Cfa018602 Carpinus fangiana HOM05D000595 ORTHO05D001274 2.7e-09 65.1 44 63.6
ClCG05G022770 Citrullus lanatus HOM05D000595 ORTHO05D001274 2.7e-09 65.1 43 69.8
Ciclev10033422m.g Citrus clementina HOM05D000595 ORTHO05D001274 2.7e-09 65.1 51 60.8
PGR119G2037 Punica granatum HOM05D000595 ORTHO05D001274 3.6e-09 64.7 43 69.8
Aqoxy3G03952 Aquilegia oxysepala HOM05D000595 ORTHO05D001274 4.6e-09 64.3 48 58.3
Sed0011005 Sechium edule HOM05D000595 ORTHO05D001274 4.6e-09 64.3 43 67.4
ECA233G6181 Erigeron canadensis HOM05D000595 ORTHO05D001274 6.1e-09 63.9 44 59.1
Solyc04g007150.3 Solanum lycopersicum HOM05D000595 ORTHO05D001274 6.1e-09 63.9 48 56.2
Sopen04g002240 Solanum pennellii HOM05D000595 ORTHO05D001274 6.1e-09 63.9 48 56.2
PGSC0003DMG400015881 Solanum tuberosum HOM05D000595 ORTHO05D001274 6.1e-09 63.9 48 56.2
TPR.G26300 Trifolium pratense HOM05D000595 ORTHO05D001274 6.1e-09 63.9 54 51.9
CARHR154320 Cardamine hirsuta HOM05D000595 ORTHO05D001274 7.9e-09 63.5 44 68.2
Peaxi162Scf01346g00216 Petunia axillaris HOM05D000595 ORTHO05D001274 7.9e-09 63.5 43 60.5
Glyma.10G274700 Glycine max HOM05D000595 ORTHO05D001274 1.0e-08 63.2 52 53.8
HanXRQChr16g0529301 Helianthus annuus HOM05D000595 ORTHO05D001274 1.0e-08 63.2 44 61.4
PSO384G1387 Papaver somniferum HOM05D000595 ORTHO05D001274 1.0e-08 63.2 55 52.7
Psat2g106040 Pisum sativum HOM05D000595 ORTHO05D001274 1.0e-08 63.2 50 54.0
MSTRG.2239 Avicennia marina HOM05D000595 ORTHO05D001274 1.4e-08 62.8 44 61.4
Haze_17474 Corylus avellana HOM05D000595 ORTHO05D001274 1.4e-08 62.8 44 61.4
Lsat_1_v5_gn_8_39840 Lactuca sativa HOM05D000595 ORTHO05D001274 1.8e-08 62.4 44 59.1
Sed0008868 Sechium edule HOM05D000595 ORTHO05D001274 1.8e-08 62.4 43 65.1
Nn4g23818 Nelumbo nucifera HOM05D000595 ORTHO05D001274 2.3e-08 62.0 48 62.5
arahy.Tifrunner.gnm1.ann1.E2GMYT Arachis hypogaea HOM05D000595 ORTHO05D001274 5.1e-08 60.8 47 59.6
arahy.Tifrunner.gnm1.ann1.NG0Q3I Arachis hypogaea HOM05D000595 ORTHO05D001274 5.1e-08 60.8 47 59.6
PSO339G2215 Papaver somniferum HOM05D000595 ORTHO05D001274 6.7e-08 60.5 55 50.9
Migut.E00333 Erythranthe guttata HOM05D000595 ORTHO05D001274 1.1e-07 59.7 45 62.2
ECA234G4000 Erigeron canadensis HOM05D000595 ORTHO05D001274 1.5e-07 59.3 44 59.1
CsaV3_5G034260 Cucumis sativus L. HOM05D000595 ORTHO05D001274 2.0e-07 58.9 43 62.8
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 2.6e-07 58.5 48 64.6
CDE10G0024 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 3.3e-07 58.2 47 63.8
MELO3C012241.2 Cucumis melo HOM05D000595 ORTHO05D001274 4.4e-07 57.8 43 60.5
SalBow8G5264 Salvia bowleyana HOM05D000595 ORTHO05D001274 5.7e-07 57.4 43 55.8
arahy.Tifrunner.gnm1.ann1.W977IP Arachis hypogaea HOM05D000595 ORTHO05D001274 7.4e-07 57.0 50 50.0
arahy.Tifrunner.gnm1.ann1.Z1NGKZ Arachis hypogaea HOM05D000595 ORTHO05D001274 7.4e-07 57.0 50 50.0
Os01g0130400 Oryza sativa ssp. japonica HOM05D000595 ORTHO05D001274 7.4e-07 57.0 44 61.4
arahy.Tifrunner.gnm1.ann1.4542IJ Arachis hypogaea HOM05D000595 ORTHO05D001274 9.7e-07 56.6 44 65.9
CDE10G0541 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 2.2e-06 55.5 47 61.7
unitig_27.g25248 Utricularia gibba HOM05D000595 ORTHO05D001274 2.2e-06 55.5 51 52.9
arahy.Tifrunner.gnm1.ann1.NFLY9K Arachis hypogaea HOM05D000595 ORTHO05D001274 3.7e-06 54.7 44 63.6
HPP92_003776 Vanilla planifolia HOM05D000595 ORTHO05D026496 3.7e-06 54.7 43 58.1


User provided reference genes

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