Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.03g136670 Amaranthus hybridus HOM05D006474 ORTHO05D007994 6.6e-116 420.6 200 100.0
AUR62032506 Chenopodium quinoa HOM05D006474 ORTHO05D007994 1.8e-92 342.8 232 71.6
AUR62043230 Chenopodium quinoa HOM05D006474 ORTHO05D007994 7.4e-91 337.4 232 71.6
EL10Ac6g13937 Beta vulgaris HOM05D006474 ORTHO05D007994 7.2e-86 320.9 232 67.2
Atru.BG.24.p Acer truncatum HOM05D006474 ORTHO05D007994 1.2e-56 223.8 235 46.4
HanXRQChr06g0181391 Helianthus annuus HOM05D006474 ORTHO05D007994 8.5e-55 217.6 234 45.7
BcaNung00499 Brassica carinata HOM05D006474 ORTHO05D007994 1.5e-54 216.9 240 45.4
Rhsim01G0114400 Rhododendron simsii HOM05D006474 ORTHO05D007994 4.2e-54 215.3 234 45.7
Sc14g0003050 Simmondsia chinensis HOM05D006474 ORTHO05D007994 4.2e-54 215.3 232 43.1
vmacro20800 Vaccinium macrocarpon HOM05D006474 ORTHO05D007994 4.2e-54 215.3 235 45.5
ECA236G3875 Erigeron canadensis HOM05D006474 ORTHO05D007994 5.5e-54 214.9 234 45.3
Prupe.1G072500 Prunus persica HOM05D006474 ORTHO05D007994 9.4e-54 214.2 231 42.9
Thhalv10025251m.g Eutrema salsugineum HOM05D006474 ORTHO05D007994 1.2e-53 213.8 237 45.1
TAR383G1087 Trochodendron aralioides HOM05D006474 ORTHO05D007994 2.7e-53 212.6 236 44.9
EL10Ac8g19287 Beta vulgaris HOM05D006474 ORTHO05D007994 1.0e-52 210.7 232 45.7
Ca_21263_v3 Cicer arietinum L. HOM05D006474 ORTHO05D007994 1.0e-52 210.7 236 43.2
MD13G1241100 Malus domestica HOM05D006474 ORTHO05D007994 1.0e-52 210.7 231 42.9
Sp7g27700 Schrenkiella parvula HOM05D006474 ORTHO05D007994 1.0e-52 210.7 237 45.1
Actinidia38505 Actinidia chinensis HOM05D006474 ORTHO05D007994 3.0e-52 209.1 234 44.4
Cpa.g.sc115.63 Carica papaya HOM05D006474 ORTHO05D007994 3.0e-52 209.1 235 44.3
DCAR_020143 Daucus carota HOM05D006474 ORTHO05D007994 3.0e-52 209.1 234 44.4
Glyma.17G057700 Glycine max HOM05D006474 ORTHO05D007994 3.0e-52 209.1 235 42.6
Lj4g0020492 Lotus japonicus HOM05D006474 ORTHO05D007994 3.0e-52 209.1 235 42.1
Os06g0698785 Oryza sativa ssp. japonica HOM05D006474 ORTHO05D007994 4.0e-52 208.8 233 42.9
QL02p064597 Quercus lobata HOM05D006474 ORTHO05D007994 4.0e-52 208.8 234 44.0
RcHm_v2.0_Chr4g0398871 Rosa chinensis HOM05D006474 ORTHO05D007994 4.0e-52 208.8 231 42.4
A03p59310 Brassica napus HOM05D006474 ORTHO05D007994 5.2e-52 208.4 241 43.6
BraA03t14988Z Brassica rapa HOM05D006474 ORTHO05D007994 5.2e-52 208.4 241 43.6
Aqoxy7G02891 Aquilegia oxysepala HOM05D006474 ORTHO05D007994 6.8e-52 208.0 236 43.2
Phvul.003G140100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 6.8e-52 208.0 235 42.6
MSTRG.5932 Avicennia marina HOM05D006474 ORTHO05D007994 8.8e-52 207.6 236 43.6
Carub.0007s1076 Capsella rubella HOM05D006474 ORTHO05D007994 1.2e-51 207.2 236 44.5
HanXRQChr06g0181381 Helianthus annuus HOM05D006474 ORTHO05D007994 1.2e-51 207.2 227 44.9
Eucgr.C00087 Eucalyptus grandis HOM05D006474 ORTHO05D007994 2.0e-51 206.5 235 43.4
AT4G29890 Arabidopsis thaliana HOM05D006474 ORTHO05D007994 2.6e-51 206.1 236 44.5
C07p57320 Brassica napus HOM05D006474 ORTHO05D007994 2.6e-51 206.1 240 42.9
BolC7t46201H Brassica oleracea HOM05D006474 ORTHO05D007994 3.4e-51 205.7 240 43.3
CARHR237790 Cardamine hirsuta HOM05D006474 ORTHO05D007994 4.4e-51 205.3 236 43.6
Manes.06G017600 Manihot esculenta HOM05D006474 ORTHO05D007994 4.4e-51 205.3 235 43.8
TWI32G0724 Tripterygium wilfordii HOM05D006474 ORTHO05D007994 5.7e-51 204.9 234 42.7
GSVIVG01029282001 Vitis vinifera HOM05D006474 ORTHO05D007994 5.7e-51 204.9 235 42.1
Ah.14g085320 Amaranthus hybridus HOM05D006474 ORTHO05D007994 9.8e-51 204.1 231 44.6
AUR62027431 Chenopodium quinoa HOM05D006474 ORTHO05D007994 9.8e-51 204.1 233 45.5
Lalb_Chr07g0180731 Lupinus albus HOM05D006474 ORTHO05D007994 1.3e-50 203.8 235 41.7
CiPaw.07G199100 Carya illinoinensis HOM05D006474 ORTHO05D007994 2.2e-50 203.0 235 42.1
Nitab4.5_0004916g0010 Nicotiana tabacum HOM05D006474 ORTHO05D007994 2.2e-50 203.0 235 42.1
Peaxi162Scf00046g00533 Petunia axillaris HOM05D006474 ORTHO05D007994 2.8e-50 202.6 234 42.7
COL.COLO4_37571 Corchorus olitorius HOM05D006474 ORTHO05D007994 3.7e-50 202.2 234 41.0
FAN07G0584 Fragaria x ananassa HOM05D006474 ORTHO05D007994 4.8e-50 201.8 231 41.6
Sabra06G0054200 Salix brachista HOM05D006474 ORTHO05D007994 4.8e-50 201.8 234 42.7
Thecc.04G204000 Theobroma cacao HOM05D006474 ORTHO05D007994 6.3e-50 201.4 234 41.9
AL7G22360 Arabidopsis lyrata HOM05D006474 ORTHO05D007994 8.3e-50 201.1 236 44.5
MBI14_g10727_MAGBIO Magnolia biondii HOM05D006474 ORTHO05D007994 8.3e-50 201.1 253 42.3
SalBow1G1087 Salvia bowleyana HOM05D006474 ORTHO05D007994 8.3e-50 201.1 234 41.9
TPR.G5392 Trifolium pratense HOM05D006474 ORTHO05D007994 8.3e-50 201.1 235 41.3
CDE02G2399 Ceratophyllum demersum HOM05D006474 ORTHO05D007994 1.1e-49 200.7 235 41.3
PSO063G0500 Papaver somniferum HOM05D006474 ORTHO05D007994 1.1e-49 200.7 238 41.2
AUR62031264 Chenopodium quinoa HOM05D006474 ORTHO05D007994 2.4e-49 199.5 231 44.2
Potri.006G072800 Populus trichocarpa HOM05D006474 ORTHO05D007994 2.4e-49 199.5 234 42.7
PGSC0003DMG400019888 Solanum tuberosum HOM05D006474 ORTHO05D007994 2.4e-49 199.5 236 41.5
Zm00001eb273050 Zea mays HOM05D006474 ORTHO05D007994 2.4e-49 199.5 233 41.6
Cc01_g11810 Coffea canephora HOM05D006474 ORTHO05D007994 3.1e-49 199.1 235 43.0
Gohir.A05G408600 Gossypium hirsutum HOM05D006474 ORTHO05D007994 3.1e-49 199.1 234 42.3
Gohir.D04G006800 Gossypium hirsutum HOM05D006474 ORTHO05D007994 3.1e-49 199.1 234 42.3
Nitab4.5_0000028g0400 Nicotiana tabacum HOM05D006474 ORTHO05D007994 3.1e-49 199.1 236 43.2
Sed0007392 Sechium edule HOM05D006474 ORTHO05D007994 3.1e-49 199.1 230 43.0
arahy.Tifrunner.gnm1.ann1.HVXZ0P Arachis hypogaea HOM05D006474 ORTHO05D007994 4.1e-49 198.7 235 40.4
MELO3C009992.2 Cucumis melo HOM05D006474 ORTHO05D007994 4.1e-49 198.7 235 42.1
arahy.Tifrunner.gnm1.ann1.Z6GGIF Arachis hypogaea HOM05D006474 ORTHO05D007994 5.4e-49 198.4 235 40.4
FAN12G2823 Fragaria x ananassa HOM05D006474 ORTHO05D007994 5.4e-49 198.4 231 41.6
CSS0012665 Camellia sinensis var. sinensis HOM05D006474 ORTHO05D007994 7.0e-49 198.0 225 43.6
Migut.J00780 Erythranthe guttata HOM05D006474 ORTHO05D007994 7.0e-49 198.0 239 41.4
FvH4_4g06930 Fragaria vesca HOM05D006474 ORTHO05D007994 7.0e-49 198.0 231 41.6
Sopen07g004200 Solanum pennellii HOM05D006474 ORTHO05D007994 7.0e-49 198.0 236 41.1
Oeu035450.1 Olea europaea HOM05D006474 ORTHO05D007994 1.2e-48 197.2 236 41.9
CsaV3_1G043980 Cucumis sativus L. HOM05D006474 ORTHO05D007994 1.6e-48 196.8 235 42.6
FAN17G1111 Fragaria x ananassa HOM05D006474 ORTHO05D007994 1.6e-48 196.8 231 41.1
Medtr4g127130 Medicago truncatula HOM05D006474 ORTHO05D007994 1.6e-48 196.8 232 41.8
PGR142G0270 Punica granatum HOM05D006474 ORTHO05D007994 1.6e-48 196.8 234 42.3
Gorai.012G008200 Gossypium raimondii HOM05D006474 ORTHO05D007994 2.7e-48 196.1 238 41.2
Ciclev10008481m.g Citrus clementina HOM05D006474 ORTHO05D007994 3.5e-48 195.7 242 41.3
Migut.J00779 Erythranthe guttata HOM05D006474 ORTHO05D007994 5.9e-48 194.9 236 40.3
ATR0580G130 Amborella trichopoda HOM05D006474 ORTHO05D007994 7.7e-48 194.5 235 42.1
SGA_v2.0_scaffold112G31632 Striga asiatica HOM05D006474 ORTHO05D007994 7.7e-48 194.5 247 42.1
Aa31LG2G20660 Aethionema arabicum HOM05D006474 ORTHO05D007994 1.3e-47 193.7 237 42.2
Solyc07g008310.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 1.3e-47 193.7 236 39.8
Sopen07g004190 Solanum pennellii HOM05D006474 ORTHO05D007994 2.9e-47 192.6 236 41.1
Solyc07g008300.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 5.0e-47 191.8 236 41.9
ClCG03G011950 Citrullus lanatus HOM05D006474 ORTHO05D007994 6.5e-47 191.4 235 40.4
HPP92_010297 Vanilla planifolia HOM05D006474 ORTHO05D007994 2.5e-46 189.5 235 40.0
Haze_22046 Corylus avellana HOM05D006474 ORTHO05D007994 4.2e-46 188.7 286 35.7
Duzib170G0180 Durio zibethinus HOM05D006474 ORTHO05D007994 1.2e-45 187.2 261 36.8
Dinv41197 Davidia involucrata HOM05D006474 ORTHO05D007994 8.0e-45 184.5 217 42.4
Nn8g40661 Nelumbo nucifera HOM05D006474 ORTHO05D007994 1.0e-44 184.1 216 42.6
Sed0005056 Sechium edule HOM05D006474 ORTHO05D007994 2.3e-44 183.0 235 41.3
SMO196G0177 Selaginella moellendorffii HOM05D006474 ORTHO05D007994 5.2e-44 181.8 230 40.4
AagrBONN_evm.TU.Sc2ySwM_117.1622 Anthoceros agrestis HOM05D006474 ORTHO05D007994 2.0e-43 179.9 239 39.7
Pp3c13_13580 Physcomitrium patens HOM05D006474 ORTHO05D007994 3.7e-42 175.6 232 37.1
CAN.G403.4 Capsicum annuum HOM05D006474 ORTHO05D007994 5.4e-41 171.8 216 41.7
Mapoly0089s0013 Marchantia polymorpha HOM05D006474 ORTHO05D007994 2.5e-38 162.9 250 36.8
Lsat_1_v5_gn_8_68301 Lactuca sativa HOM05D006474 ORTHO05D007994 2.8e-37 159.5 238 39.1
Lsat_1_v5_gn_9_69680 Lactuca sativa HOM05D006474 ORTHO05D007994 1.8e-36 156.8 228 38.2
CANSAT54G2413 Cannabis sativa HOM05D006474 ORTHO05D007994 4.1e-33 145.6 202 37.1
Cfa013469 Carpinus fangiana HOM05D006474 ORTHO05D007994 4.3e-30 135.6 184 37.5
Psat4g014320 Pisum sativum HOM05D006474 ORTHO05D007994 6.2e-29 131.7 197 35.5
Lsat_1_v5_gn_5_32380 Lactuca sativa HOM05D006474 ORTHO05D007994 8.0e-29 131.3 160 41.2
Phvul.010G082000 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 1.1e-28 131.0 186 35.5
Lju50A4G45 Lonicera japonica HOM05D006474 ORTHO05D007994 6.8e-28 128.3 173 39.3
MCO02G024 Micromonas commoda HOM05D006474 ORTHO05D007994 8.3e-26 121.3 239 31.0
Hund22985 Selenicereus undatus HOM05D006474 ORTHO05D007994 3.2e-25 119.4 200 34.0
FAN22G2051 Fragaria x ananassa HOM05D006474 ORTHO05D007994 8.9e-20 101.3 87 51.7
PSO170G4238 Papaver somniferum HOM05D006474 ORTHO05D007994 1.1e-17 94.4 146 36.3
Actinidia29962 Actinidia chinensis HOM05D006474 ORTHO05D007994 1.7e-15 87.0 90 44.4
Gohir.A01G088200 Gossypium hirsutum HOM05D006474 ORTHO05D007994 1.4e-12 77.4 60 53.3
SEGI_13868 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 1.2e-11 74.3 60 51.7
Thecc.09G192500 Theobroma cacao HOM05D006474 ORTHO05D007994 1.2e-11 74.3 60 50.0
Phvul.011G131100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 3.5e-08 62.8 72 37.5
Gohir.A05G306101 Gossypium hirsutum HOM05D005508 ORTHO05D007994 6.0e-08 62.0 42 57.1
Gohir.A08G164600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 1.0e-07 61.2 72 38.9
SEGI_01125 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 6.6e-07 58.5 72 38.9


User provided reference genes

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