Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g130970 Amaranthus hybridus HOM05D004390 ORTHO05D004950 2.6e-65 251.9 127 100.0
EL10Ac6g13484 Beta vulgaris HOM05D004390 ORTHO05D004950 8.4e-40 167.2 100 79.0
Ah.03g136230 Amaranthus hybridus HOM05D001171 ORTHO05D006126 7.4e-36 154.1 99 78.8
AUR62024125 Chenopodium quinoa HOM05D004390 ORTHO05D004950 7.4e-36 154.1 84 84.5
Hund25458 Selenicereus undatus HOM05D004390 ORTHO05D004950 2.0e-33 146.0 94 75.5
Potri.010G059300 Populus trichocarpa HOM05D004390 ORTHO05D004950 7.6e-33 144.1 93 71.0
Gohir.A12G148600 Gossypium hirsutum HOM05D004390 ORTHO05D004950 9.9e-33 143.7 97 70.1
Potri.008G175775 Populus trichocarpa HOM05D004390 ORTHO05D004950 9.9e-33 143.7 95 69.5
CSS0004094 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 2.9e-32 142.1 93 73.1
CSS0048605 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 2.9e-32 142.1 93 73.1
Sc11g0000500 Simmondsia chinensis HOM05D004390 ORTHO05D004950 4.9e-32 141.4 97 68.0
Thecc.02G210700 Theobroma cacao HOM05D004390 ORTHO05D004950 4.9e-32 141.4 87 77.0
Lsat_1_v5_gn_8_149361 Lactuca sativa HOM05D004390 ORTHO05D004950 8.4e-32 140.6 93 71.0
Haze_10374 Corylus avellana HOM05D004390 ORTHO05D004950 1.1e-31 140.2 87 74.7
Duzib248G1577 Durio zibethinus HOM05D004390 ORTHO05D004950 1.1e-31 140.2 87 74.7
Eucgr.B03484 Eucalyptus grandis HOM05D004390 ORTHO05D004950 1.4e-31 139.8 126 60.3
Manes.12G012800 Manihot esculenta HOM05D004390 ORTHO05D004950 1.4e-31 139.8 92 72.8
Gohir.D01G154700 Gossypium hirsutum HOM05D004390 ORTHO05D004950 1.9e-31 139.4 93 71.0
Gorai.002G191500 Gossypium raimondii HOM05D004390 ORTHO05D004950 1.9e-31 139.4 93 71.0
Cfa009329 Carpinus fangiana HOM05D004390 ORTHO05D004950 3.2e-31 138.7 94 72.3
DCAR_007008 Daucus carota HOM05D004390 ORTHO05D004950 4.2e-31 138.3 92 69.6
ECA233G0624 Erigeron canadensis HOM05D004390 ORTHO05D004950 4.2e-31 138.3 93 71.0
ECA240G0924 Erigeron canadensis HOM05D004390 ORTHO05D004950 4.2e-31 138.3 93 71.0
Gorai.008G164900 Gossypium raimondii HOM05D004390 ORTHO05D004950 4.2e-31 138.3 93 72.0
Lj7E465T0 Lonicera japonica HOM05D004390 ORTHO05D004950 1.2e-30 136.7 92 70.7
QL03p053718 Quercus lobata HOM05D004390 ORTHO05D004950 1.2e-30 136.7 93 68.8
Sabra08G0134000 Salix brachista HOM05D004390 ORTHO05D004950 1.2e-30 136.7 94 67.0
Gohir.D12G152500 Gossypium hirsutum HOM05D004390 ORTHO05D004950 2.1e-30 136.0 93 71.0
Phvul.001G260900 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 2.1e-30 136.0 93 65.6
PGR102G2095 Punica granatum HOM05D004390 ORTHO05D004950 2.1e-30 136.0 97 69.1
arahy.Tifrunner.gnm1.ann1.L53BL2 Arachis hypogaea HOM05D004390 ORTHO05D004950 2.7e-30 135.6 99 65.7
CANSAT80G1060 Cannabis sativa HOM05D004390 ORTHO05D004950 2.7e-30 135.6 92 70.7
Dinv14827 Davidia involucrata HOM05D001171 ORTHO05D001872 3.5e-30 135.2 127 55.9
Actinidia08077 Actinidia chinensis HOM05D001171 ORTHO05D001872 4.6e-30 134.8 109 61.5
Carub.0007s0202 Capsella rubella HOM05D004390 ORTHO05D004950 4.6e-30 134.8 93 71.0
Cpa.g.sc34.218 Carica papaya HOM05D004390 ORTHO05D004950 4.6e-30 134.8 98 67.3
FvH4_4g23930 Fragaria vesca HOM05D004390 ORTHO05D004950 4.6e-30 134.8 95 68.4
FAN12G2113 Fragaria x ananassa HOM05D006059 ORTHO05D004950 4.6e-30 134.8 95 68.4
Glyma.18G007600 Glycine max HOM05D004390 ORTHO05D004950 4.6e-30 134.8 93 67.7
Actinidia09657 Actinidia chinensis HOM05D004390 ORTHO05D004950 6.0e-30 134.4 92 69.6
arahy.Tifrunner.gnm1.ann1.FA6GLZ Arachis hypogaea HOM05D004390 ORTHO05D004950 6.0e-30 134.4 93 68.8
CiPaw.06G101400 Carya illinoinensis HOM05D004390 ORTHO05D004950 6.0e-30 134.4 87 72.4
FAN07G0791 Fragaria x ananassa HOM05D004390 ORTHO05D004950 6.0e-30 134.4 95 67.4
FAN17G1207 Fragaria x ananassa HOM05D004390 ORTHO05D004950 6.0e-30 134.4 95 67.4
FAN22G0688 Fragaria x ananassa HOM05D004390 ORTHO05D004950 6.0e-30 134.4 95 67.4
AL7G12360 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 7.9e-30 134.0 92 69.6
Glyma.11G249600 Glycine max HOM05D004390 ORTHO05D004950 1.0e-29 133.7 93 66.7
Nitab4.5_0000379g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 1.3e-29 133.3 92 68.5
BcaNung00935 Brassica carinata HOM05D004390 ORTHO05D004950 1.8e-29 132.9 93 67.7
Thhalv10027263m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 1.8e-29 132.9 116 59.5
Gohir.A01G155400 Gossypium hirsutum HOM05D004390 ORTHO05D004950 1.8e-29 132.9 93 67.7
Rhsim10G0039200 Rhododendron simsii HOM05D004390 ORTHO05D004950 1.8e-29 132.9 93 67.7
Atru.chr11.2308 Acer truncatum HOM05D004390 ORTHO05D004950 2.3e-29 132.5 93 68.8
Duzib251G0716 Durio zibethinus HOM05D004390 ORTHO05D004950 2.3e-29 132.5 87 71.3
HanXRQChr08g0207731 Helianthus annuus HOM05D004390 ORTHO05D004950 2.3e-29 132.5 92 68.5
Hma1.2p1_0065F.1_g035640 Hydrangea macrophylla HOM05D004390 ORTHO05D004950 2.3e-29 132.5 92 67.4
Os12g0438900 Oryza sativa ssp. japonica HOM05D004390 ORTHO05D004950 2.3e-29 132.5 104 60.6
THA.LOC104824895 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 2.3e-29 132.5 93 67.7
TWI18G1082 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 2.3e-29 132.5 93 68.8
arahy.Tifrunner.gnm1.ann1.CM82MG Arachis hypogaea HOM05D004390 ORTHO05D004950 3.0e-29 132.1 93 67.7
Medtr3g085510 Medicago truncatula HOM05D004390 ORTHO05D004950 3.0e-29 132.1 93 66.7
Nitab4.5_0000367g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 3.0e-29 132.1 92 67.4
Psat5g095200 Pisum sativum HOM05D004390 ORTHO05D004950 3.0e-29 132.1 93 69.9
Actinidia20702 Actinidia chinensis HOM05D004390 ORTHO05D004950 3.9e-29 131.7 92 68.5
Glyma.08G103600 Glycine max HOM05D004390 ORTHO05D004950 3.9e-29 131.7 93 67.7
Medtr8g080380 Medicago truncatula HOM05D004390 ORTHO05D004950 3.9e-29 131.7 102 63.7
Cc09_g06290 Coffea canephora HOM05D015856 ORTHO05D004950 5.1e-29 131.3 93 66.7
Psat4g014960 Pisum sativum HOM05D004390 ORTHO05D004950 5.1e-29 131.3 93 67.7
Prupe.1G228300 Prunus persica HOM05D004390 ORTHO05D004950 5.1e-29 131.3 93 67.7
BolC1t00106H Brassica oleracea HOM05D004390 ORTHO05D004950 6.7e-29 131.0 93 66.7
Lj4g0026719 Lotus japonicus HOM05D004390 ORTHO05D004950 6.7e-29 131.0 93 67.7
Nitab4.5_0002210g0100 Nicotiana tabacum HOM05D004390 ORTHO05D004950 6.7e-29 131.0 93 67.7
THA.LOC104824892 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 6.7e-29 131.0 94 66.0
THA.LOC104824896 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 6.7e-29 131.0 94 66.0
TWI36G1003 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 6.7e-29 131.0 92 67.4
Ca_18042_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 8.7e-29 130.6 93 66.7
Cc11_g00910 Coffea canephora HOM05D004390 ORTHO05D004950 8.7e-29 130.6 93 65.6
THA.LOC104824898 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 8.7e-29 130.6 93 66.7
GSVIVG01010448001 Vitis vinifera HOM05D004390 ORTHO05D004950 8.7e-29 130.6 95 69.5
A01p00960 Brassica napus HOM05D004390 ORTHO05D004950 1.1e-28 130.2 93 66.7
BraA01t00094Z Brassica rapa HOM05D004390 ORTHO05D004950 1.1e-28 130.2 93 66.7
QL12p006243 Quercus lobata HOM05D004390 ORTHO05D004950 1.1e-28 130.2 93 65.6
HPP92_024163 Vanilla planifolia HOM05D000064 ORTHO05D000281 1.1e-28 130.2 97 62.9
Aqoxy5G03398 Aquilegia oxysepala HOM05D004390 ORTHO05D004950 1.5e-28 129.8 95 66.3
CAN.G638.34 Capsicum annuum HOM05D004390 ORTHO05D004950 1.5e-28 129.8 93 67.7
COL.COLO4_20382 Corchorus olitorius HOM05D001171 ORTHO05D001872 1.5e-28 129.8 107 62.6
CARHR246620 Cardamine hirsuta HOM05D004390 ORTHO05D004950 2.5e-28 129.0 88 68.2
Phvul.002G174400 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 2.5e-28 129.0 93 66.7
Glyma.05G146700 Glycine max HOM05D004390 ORTHO05D004950 3.3e-28 128.6 93 66.7
THA.LOC104824890 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 3.3e-28 128.6 93 64.5
Ca_16468_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 4.3e-28 128.3 94 66.0
Migut.K00715 Erythranthe guttata HOM05D004390 ORTHO05D004950 4.3e-28 128.3 93 66.7
HPP92_024177 Vanilla planifolia HOM05D004390 ORTHO05D004950 5.6e-28 127.9 95 63.2
TPR.G28271 Trifolium pratense HOM05D004390 ORTHO05D004950 9.6e-28 127.1 93 68.8
TWI75G0215 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 9.6e-28 127.1 93 66.7
MBI11_g07456_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 1.6e-27 126.3 92 64.1
Sp7g35820 Schrenkiella parvula HOM05D004390 ORTHO05D004950 1.6e-27 126.3 92 66.3
AT4G40042 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 2.1e-27 125.9 93 65.6
Duzib268G0993 Durio zibethinus HOM05D004390 ORTHO05D004950 2.1e-27 125.9 87 69.0
MELO3C011874.2 Cucumis melo HOM05D004390 ORTHO05D004950 2.8e-27 125.6 93 63.4
Migut.E00025 Erythranthe guttata HOM05D004390 ORTHO05D004950 3.7e-27 125.2 92 62.0
Peaxi162Scf00128g01124 Petunia axillaris HOM05D004390 ORTHO05D004950 3.7e-27 125.2 93 64.5
THA.LOC109116235 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 4.8e-27 124.8 79 70.9
Nitab4.5_0000592g0450 Nicotiana tabacum HOM05D004390 ORTHO05D004950 6.2e-27 124.4 93 66.7
Oeu058917.1 Olea europaea HOM05D004390 ORTHO05D004950 6.2e-27 124.4 92 65.2
AT2G22425 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 8.2e-27 124.0 93 63.4
ClCG11G013760 Citrullus lanatus HOM05D004390 ORTHO05D004950 1.4e-26 123.2 95 63.2
CsaV3_5G030350 Cucumis sativus L. HOM05D004390 ORTHO05D004950 1.4e-26 123.2 93 62.4
Rhsim12G0027700 Rhododendron simsii HOM05D004390 ORTHO05D004950 1.4e-26 123.2 87 63.2
CSS0024228 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 1.8e-26 122.9 93 67.7
Thhalv10000378m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 1.8e-26 122.9 93 62.4
Sed0024223 Sechium edule HOM05D004390 ORTHO05D004950 1.8e-26 122.9 93 61.3
TAR622G0138 Trochodendron aralioides HOM05D004390 ORTHO05D004950 1.8e-26 122.9 92 65.2
CARHR113610 Cardamine hirsuta HOM05D004390 ORTHO05D004950 2.4e-26 122.5 93 63.4
Aa31LG6G15170 Aethionema arabicum HOM05D004390 ORTHO05D004950 3.1e-26 122.1 93 65.6
Nn3g16498 Nelumbo nucifera HOM05D004390 ORTHO05D004950 3.1e-26 122.1 93 61.3
SpUn0131_0010 Schrenkiella parvula HOM05D004390 ORTHO05D004950 3.1e-26 122.1 92 60.9
Zm00001eb052740 Zea mays HOM05D004390 ORTHO05D004950 3.1e-26 122.1 97 58.8
Lsat_1_v5_gn_3_29821 Lactuca sativa HOM05D004390 ORTHO05D004950 5.3e-26 121.3 87 67.8
TAR371G0820 Trochodendron aralioides HOM05D004390 ORTHO05D004950 5.3e-26 121.3 92 63.0
Aa31LG7G14400 Aethionema arabicum HOM05D004390 ORTHO05D004950 6.9e-26 120.9 93 62.4
Sopen03g001750 Solanum pennellii HOM05D004390 ORTHO05D004950 6.9e-26 120.9 92 64.1
Aa31LG7G15420 Aethionema arabicum HOM05D004390 ORTHO05D004950 9.0e-26 120.6 93 61.3
AL4G11930 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 9.0e-26 120.6 93 61.3
Zm00001eb218300 Zea mays HOM05D004390 ORTHO05D004950 9.0e-26 120.6 96 58.3
Carub.0004s0159 Capsella rubella HOM05D004390 ORTHO05D004950 1.2e-25 120.2 93 62.4
Nn4g22350 Nelumbo nucifera HOM05D004390 ORTHO05D004950 1.5e-25 119.8 93 61.3
BraA09t41150Z Brassica rapa HOM05D004390 ORTHO05D004950 2.6e-25 119.0 93 61.3
A09p57580 Brassica napus HOM05D004390 ORTHO05D004950 3.4e-25 118.6 93 61.3
BcaB08g35066 Brassica carinata HOM05D004390 ORTHO05D004950 5.8e-25 117.9 93 62.4
MBI13_g26147_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 5.8e-25 117.9 93 60.2
RcHm_v2.0_Chr4g0430591 Rosa chinensis HOM05D004390 ORTHO05D004950 5.8e-25 117.9 84 69.0
C08p40770 Brassica napus HOM05D004390 ORTHO05D004950 1.0e-24 117.1 93 60.2
MBI05_g44034_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 1.0e-24 117.1 93 59.1
ClCG09G006830 Citrullus lanatus HOM05D004390 ORTHO05D004950 1.3e-24 116.7 93 59.1
DCAR_031195 Daucus carota HOM05D001171 ORTHO05D006126 1.3e-24 116.7 92 54.3
TAR629G1658 Trochodendron aralioides HOM05D004390 ORTHO05D004950 1.7e-24 116.3 92 62.0
Lalb_Chr12g0206281 Lupinus albus HOM05D004390 ORTHO05D004950 2.2e-24 115.9 81 70.4
PSO478G0183 Papaver somniferum HOM05D004390 ORTHO05D004950 2.9e-24 115.5 94 58.5
PSO017G1102 Papaver somniferum HOM05D004390 ORTHO05D004950 3.8e-24 115.2 95 58.9
BcaC07g41074 Brassica carinata HOM05D004390 ORTHO05D004950 8.4e-24 114.0 93 59.1
BolC8t51641H Brassica oleracea HOM05D004390 ORTHO05D004950 8.4e-24 114.0 93 59.1
Thhalv10021836m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 3.2e-23 112.1 90 57.8
Lalb_Chr07g0187411 Lupinus albus HOM05D004390 ORTHO05D004950 3.2e-23 112.1 81 67.9
SEGI_16803 Sequoiadendron giganteum HOM05D004390 ORTHO05D004950 7.1e-23 110.9 131 48.9
Carub.0003s1416 Capsella rubella HOM05D004390 ORTHO05D004950 9.3e-23 110.5 91 54.9
MD13G1117200 Malus domestica HOM05D004390 ORTHO05D004950 1.6e-22 109.8 83 66.3
ATR0561G166 Amborella trichopoda HOM05D004390 ORTHO05D004950 2.7e-22 109.0 88 56.8
CARHR089330 Cardamine hirsuta HOM05D004390 ORTHO05D004950 3.5e-22 108.6 81 59.3
PSO063G2970 Papaver somniferum HOM05D004390 ORTHO05D004950 1.8e-21 106.3 93 51.6
CiPaw.05G111600 Carya illinoinensis HOM05D004390 ORTHO05D004950 3.0e-21 105.5 75 68.0
PSO782G4737 Papaver somniferum HOM05D004390 ORTHO05D004950 8.7e-21 104.0 93 49.5
Solyc03g005740.3 Solanum lycopersicum HOM05D004390 ORTHO05D004950 1.1e-20 103.6 80 63.8
ATR1098G064 Amborella trichopoda HOM05D004390 ORTHO05D004950 5.7e-20 101.3 95 55.8
MBI07_g16243_MAGBIO Magnolia biondii HOM05D002351 ORTHO05D004950 4.8e-19 98.2 79 58.2
SMO364G0480 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 1.8e-18 96.3 100 51.0
Pp3c4_12150 Physcomitrium patens HOM05D004390 ORTHO05D004950 4.1e-18 95.1 92 47.8
Pp3c10_14440 Physcomitrium patens HOM05D004390 ORTHO05D004950 4.5e-17 91.7 94 44.7
Manes.13G018500 Manihot esculenta HOM05D004390 ORTHO05D004950 1.7e-16 89.7 71 60.6
Mapoly0041s0086 Marchantia polymorpha HOM05D004390 ORTHO05D004950 1.4e-15 86.7 82 50.0
TPR.G10940 Trifolium pratense HOM05D004390 ORTHO05D004950 4.2e-15 85.1 64 65.6
MBI07_g34630_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 3.6e-14 82.0 70 52.9
Sp3g12740 Schrenkiella parvula HOM05D004390 ORTHO05D004950 7.9e-14 80.9 61 63.9
CBR_g48133 Chara braunii HOM05D004390 ORTHO05D004950 1.9e-12 76.3 69 47.8
MCO16G111 Micromonas commoda HOM05D004390 ORTHO05D004950 2.5e-12 75.9 102 39.2
SMO145G0172 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 9.7e-12 73.9 73 43.8
Lalb_Chr22g0358881 Lupinus albus HOM05D004390 ORTHO05D004950 8.2e-11 70.9 40 77.5
Nn1g04852 Nelumbo nucifera HOM05D004390 ORTHO05D004950 1.1e-10 70.5 51 64.7
Nn4g24822 Nelumbo nucifera HOM05D002155 ORTHO05D004950 1.1e-10 70.5 51 64.7
PRCOL_00005433 Prasinoderma coloniale HOM05D004390 ORTHO05D004950 1.7e-08 63.2 71 36.6
Pp3c3_460 Physcomitrium patens HOM05D004390 ORTHO05D004950 1.4e-07 60.1 73 35.6
SMO197G0059 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 1.6e-06 56.6 69 37.7
SEGI_01546 Sequoiadendron giganteum HOM05D007557 ORTHO05D009573 3.6e-06 55.5 69 39.1


User provided reference genes

Program Settings