Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g130720 Amaranthus hybridus HOM05D005952 ORTHO05D007262 1.2e-172 610.1 396 100.0
AUR62024128 Chenopodium quinoa HOM05D005952 ORTHO05D007262 8.2e-150 534.3 406 84.5
EL10Ac6g13481 Beta vulgaris HOM05D005952 ORTHO05D007262 2.5e-146 522.7 408 82.1
Hund06080 Selenicereus undatus HOM05D005952 ORTHO05D007262 5.9e-140 501.5 400 82.2
AUR62005599 Chenopodium quinoa HOM05D005952 ORTHO05D007262 7.2e-130 468.0 375 83.2
Ciclev10031923m.g Citrus clementina HOM05D005952 ORTHO05D007262 6.7e-128 461.5 323 77.7
Manes.13G018200 Manihot esculenta HOM05D005952 ORTHO05D007262 4.4e-127 458.8 324 75.3
TWI75G1563 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 2.2e-126 456.4 322 76.4
Sc04g0004640 Simmondsia chinensis HOM05D005952 ORTHO05D007262 3.7e-126 455.7 324 77.8
Nn3g16502 Nelumbo nucifera HOM05D005952 ORTHO05D007262 6.3e-126 454.9 332 74.1
Gohir.D02G150400 Gossypium hirsutum HOM05D005952 ORTHO05D007262 1.4e-125 453.8 328 74.1
Gohir.A03G127000 Gossypium hirsutum HOM05D005952 ORTHO05D007262 5.3e-125 451.8 328 73.5
Prupe.1G228700 Prunus persica HOM05D005952 ORTHO05D007262 7.0e-125 451.4 320 74.7
QL03p053757 Quercus lobata HOM05D005952 ORTHO05D007262 1.5e-124 450.3 322 76.4
TAR622G0739 Trochodendron aralioides HOM05D005952 ORTHO05D007262 2.0e-124 449.9 333 73.3
Gorai.005G168700 Gossypium raimondii HOM05D005952 ORTHO05D007262 1.3e-123 447.2 332 73.2
Actinidia20698 Actinidia chinensis HOM05D005952 ORTHO05D007262 2.2e-123 446.4 274 82.8
Cfa009332 Carpinus fangiana HOM05D005952 ORTHO05D007262 2.2e-123 446.4 326 74.2
CiPaw.06G101100 Carya illinoinensis HOM05D005952 ORTHO05D007262 2.9e-123 446.0 324 76.2
MD16G1117500 Malus domestica HOM05D005952 ORTHO05D007262 2.9e-123 446.0 323 74.0
Duzib251G0036 Durio zibethinus HOM05D005952 ORTHO05D007262 5.0e-123 445.3 326 73.9
GSVIVG01010442001 Vitis vinifera HOM05D005952 ORTHO05D007262 5.0e-123 445.3 266 85.3
Nitab4.5_0000492g0130 Nicotiana tabacum HOM05D005952 ORTHO05D007262 8.5e-123 444.5 320 74.7
ClCG11G013770 Citrullus lanatus HOM05D005952 ORTHO05D007262 1.1e-122 444.1 325 72.6
HanXRQChr08g0207671 Helianthus annuus HOM05D005952 ORTHO05D007262 1.1e-122 444.1 329 72.9
Atru.chr11.2304 Acer truncatum HOM05D005952 ORTHO05D007262 3.2e-122 442.6 329 76.3
Dinv14825 Davidia involucrata HOM05D005952 ORTHO05D007262 4.2e-122 442.2 264 84.5
Eucgr.B03481 Eucalyptus grandis HOM05D005952 ORTHO05D007262 4.2e-122 442.2 274 81.8
COL.COLO4_20379 Corchorus olitorius HOM05D005952 ORTHO05D007262 5.5e-122 441.8 358 68.7
Peaxi162Scf00518g00512 Petunia axillaris HOM05D005952 ORTHO05D007262 5.5e-122 441.8 268 84.7
Thecc.02G212400 Theobroma cacao HOM05D005952 ORTHO05D007262 5.5e-122 441.8 330 72.7
CANSAT01G2967 Cannabis sativa HOM05D005952 ORTHO05D007262 9.4e-122 441.0 298 77.2
MBI11_g07451_MAGBIO Magnolia biondii HOM05D005952 ORTHO05D007262 9.4e-122 441.0 273 81.3
arahy.Tifrunner.gnm1.ann1.19W7I6 Arachis hypogaea HOM05D005952 ORTHO05D007262 1.2e-121 440.7 391 73.7
CSS0022532 Camellia sinensis var. sinensis HOM05D005952 ORTHO05D007262 1.2e-121 440.7 263 85.9
CSS0029993 Camellia sinensis var. sinensis HOM05D005952 ORTHO05D007262 1.2e-121 440.7 263 85.9
PGR102G2583 Punica granatum HOM05D005952 ORTHO05D007262 1.6e-121 440.3 325 72.0
CsaV3_5G030360 Cucumis sativus L. HOM05D005952 ORTHO05D007262 2.1e-121 439.9 325 72.3
Cc00_g13550 Coffea canephora HOM05D005952 ORTHO05D007262 3.6e-121 439.1 319 73.7
MELO3C011875.2 Cucumis melo HOM05D005952 ORTHO05D007262 4.7e-121 438.7 325 72.6
Solyc12g035650.2 Solanum lycopersicum HOM05D005952 ORTHO05D007262 4.7e-121 438.7 328 75.0
Sopen12g015910 Solanum pennellii HOM05D005952 ORTHO05D007262 4.7e-121 438.7 328 75.0
TWI36G0663 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 4.7e-121 438.7 271 84.1
Cpa.g.sc43.12 Carica papaya HOM05D005952 ORTHO05D007262 6.1e-121 438.3 353 70.0
Potri.010G059100 Populus trichocarpa HOM05D005952 ORTHO05D007262 6.1e-121 438.3 324 77.2
Lsat_1_v5_gn_8_149221 Lactuca sativa HOM05D005952 ORTHO05D007262 8.0e-121 438.0 329 76.6
Lj3A1066G68 Lonicera japonica HOM05D005952 ORTHO05D007262 8.8e-120 434.5 271 83.0
Haze_12392 Corylus avellana HOM05D005952 ORTHO05D007262 2.0e-119 433.3 347 68.6
Lalb_Chr12g0206321 Lupinus albus HOM05D005952 ORTHO05D007262 2.6e-119 433.0 322 75.8
MD13G1116800 Malus domestica HOM05D005952 ORTHO05D007262 2.6e-119 433.0 266 83.5
RcHm_v2.0_Chr4g0430621 Rosa chinensis HOM05D005952 ORTHO05D007262 3.3e-119 432.6 327 75.8
MSTRG.7992 Avicennia marina HOM05D005952 ORTHO05D007262 5.7e-119 431.8 335 70.1
CAN.G34.9 Capsicum annuum HOM05D005952 ORTHO05D007262 1.3e-118 430.6 332 70.8
VMungo1383G3287 Vigna mungo HOM05D005952 ORTHO05D007262 1.3e-118 430.6 324 71.9
FAN07G2604 Fragaria x ananassa HOM05D005952 ORTHO05D007262 2.2e-118 429.9 328 71.0
FAN24G3446 Fragaria x ananassa HOM05D005952 ORTHO05D007262 2.2e-118 429.9 328 71.0
ECA233G5976 Erigeron canadensis HOM05D005952 ORTHO05D007262 4.8e-118 428.7 322 73.0
FvH4_4g23970 Fragaria vesca HOM05D005952 ORTHO05D007262 6.3e-118 428.3 262 82.8
FAN07G2304 Fragaria x ananassa HOM05D005952 ORTHO05D007262 6.3e-118 428.3 325 71.7
Glyma.18G008100 Glycine max HOM05D005952 ORTHO05D007262 6.3e-118 428.3 270 81.1
Phvul.001G260500 Phaseolus vulgaris HOM05D005952 ORTHO05D007262 8.2e-118 427.9 320 72.5
Aqoxy5G03416 Aquilegia oxysepala HOM05D005952 ORTHO05D007262 1.8e-117 426.8 268 81.0
Nitab4.5_0002026g0100 Nicotiana tabacum HOM05D005952 ORTHO05D007262 3.1e-117 426.0 324 72.8
Sabra10G0046500 Salix brachista HOM05D005952 ORTHO05D007262 7.0e-117 424.9 329 73.3
Lj1g0012703 Lotus japonicus HOM05D005952 ORTHO05D007262 9.1e-117 424.5 322 73.0
CDE02G4251 Ceratophyllum demersum HOM05D005952 ORTHO05D007262 2.0e-116 423.3 327 69.4
Glyma.11G249200 Glycine max HOM05D005952 ORTHO05D007262 3.5e-116 422.5 264 81.4
Psat5g094800 Pisum sativum HOM05D005952 ORTHO05D007262 5.0e-115 418.7 324 71.6
Sed0028059 Sechium edule HOM05D005952 ORTHO05D007262 5.0e-115 418.7 315 71.7
THA.LOC104825515 Tarenaya hassleriana HOM05D005952 ORTHO05D007262 6.5e-115 418.3 321 70.7
Rhsim12G0102200 Rhododendron simsii HOM05D005952 ORTHO05D007262 3.2e-114 416.0 356 66.3
A08p26510 Brassica napus HOM05D005952 ORTHO05D007262 5.5e-114 415.2 321 69.2
C03p73530 Brassica napus HOM05D005952 ORTHO05D007262 7.2e-114 414.8 320 68.4
ATR0561G264 Amborella trichopoda HOM05D005952 ORTHO05D007262 2.1e-113 413.3 315 69.5
BraA08t34603Z Brassica rapa HOM05D005952 ORTHO05D007262 6.1e-113 411.8 322 69.3
Medtr3g085590 Medicago truncatula HOM05D005952 ORTHO05D007262 6.1e-113 411.8 268 79.5
Potri.008G176100 Populus trichocarpa HOM05D005952 ORTHO05D007262 1.0e-112 411.0 330 72.4
BcaB03g12064 Brassica carinata HOM05D005952 ORTHO05D007262 3.0e-112 409.5 324 68.2
Carub.0001s2576 Capsella rubella HOM05D005952 ORTHO05D007262 3.0e-112 409.5 322 70.8
BcaC01g01637 Brassica carinata HOM05D005952 ORTHO05D007262 5.2e-112 408.7 322 68.6
BolC3t19647H Brassica oleracea HOM05D005952 ORTHO05D007262 5.2e-112 408.7 322 68.6
CARHR026780 Cardamine hirsuta HOM05D005952 ORTHO05D007262 2.0e-111 406.8 320 67.8
Migut.K00712 Erythranthe guttata HOM05D005952 ORTHO05D007262 2.0e-111 406.8 318 69.8
FAN03G3372 Fragaria x ananassa HOM05D005952 ORTHO05D007262 2.6e-111 406.4 338 67.5
Oeu036880.1 Olea europaea HOM05D005952 ORTHO05D007262 5.7e-111 405.2 360 63.3
AL1G40610 Arabidopsis lyrata HOM05D005952 ORTHO05D007262 9.7e-111 404.4 328 66.5
AT1G24310 Arabidopsis thaliana HOM05D005952 ORTHO05D007262 1.7e-110 403.7 328 66.5
SGA_v2.0_scaffold9G04762 Striga asiatica HOM05D005952 ORTHO05D007262 1.7e-110 403.7 264 79.5
Sp1g23460 Schrenkiella parvula HOM05D005952 ORTHO05D007262 1.2e-108 397.5 326 66.6
Aa31LG7G9800 Aethionema arabicum HOM05D005952 ORTHO05D007262 2.5e-106 389.8 325 64.9
FAN27G1928 Fragaria x ananassa HOM05D005952 ORTHO05D007262 7.2e-106 388.3 245 80.8
PSO782G2816 Papaver somniferum HOM05D005952 ORTHO05D007262 7.2e-106 388.3 267 75.7
DCAR_031192 Daucus carota HOM05D005952 ORTHO05D007262 9.4e-106 387.9 241 81.3
PSO063G3255 Papaver somniferum HOM05D005952 ORTHO05D007262 9.4e-106 387.9 267 75.7
Ca_16474_v3 Cicer arietinum L. HOM05D005952 ORTHO05D007262 4.7e-105 385.6 248 79.4
Sed0012291 Sechium edule HOM05D005952 ORTHO05D007262 8.0e-105 384.8 324 64.5
FAN21G1414 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.2e-103 380.9 245 80.4
arahy.Tifrunner.gnm1.ann1.2251QZ Arachis hypogaea HOM05D005952 ORTHO05D007262 6.6e-99 365.2 391 66.0
Zm00001eb305390 Zea mays HOM05D005952 ORTHO05D007262 3.3e-98 362.8 271 67.5
Os07g0295400 Oryza sativa ssp. japonica HOM05D005952 ORTHO05D007262 9.5e-98 361.3 269 66.5
HPP92_023193 Vanilla planifolia HOM05D005952 ORTHO05D007262 1.8e-96 357.1 324 60.2
FAN04G2616 Fragaria x ananassa HOM05D005952 ORTHO05D007262 5.9e-92 342.0 227 78.4
SEGI_29251 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 6.1e-89 332.0 270 63.0
CDE06G2258 Ceratophyllum demersum HOM05D005952 ORTHO05D007262 2.3e-88 330.1 327 57.8
Mapoly0010s0010 Marchantia polymorpha HOM05D005952 ORTHO05D007262 1.3e-86 324.3 268 61.2
SalBow2G2019 Salvia bowleyana HOM05D005952 ORTHO05D007262 1.1e-85 321.2 266 66.2
Pp3c10_15930 Physcomitrium patens HOM05D005952 ORTHO05D007262 1.6e-84 317.4 266 60.9
Pp3c10_15937 Physcomitrium patens HOM05D005952 ORTHO05D007262 1.6e-84 317.4 266 60.9
SHI17953 Sapria himalayana HOM05D005952 ORTHO05D007262 1.9e-82 310.5 276 59.8
AagrBONN_evm.TU.Sc2ySwM_362.1552 Anthoceros agrestis HOM05D005952 ORTHO05D007262 1.6e-81 307.4 264 59.5
CBR_g21943 Chara braunii HOM05D005952 ORTHO05D007262 4.7e-81 305.8 262 58.0
CBR_g39502 Chara braunii HOM05D005952 ORTHO05D007262 2.9e-78 296.6 332 49.7
Thhalv10008300m.g Eutrema salsugineum HOM05D005952 ORTHO05D007262 9.2e-77 291.6 240 66.2
Hma1.2p1_0668F.1_g200020 Hydrangea macrophylla HOM05D005952 ORTHO05D007262 7.1e-69 265.4 170 84.1
FAN04G0683 Fragaria x ananassa HOM05D005952 ORTHO05D007262 6.0e-68 262.3 210 67.1
TWI36G1659 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 7.8e-68 261.9 339 51.6
Actinidia09658 Actinidia chinensis HOM05D005952 ORTHO05D007262 1.2e-65 254.6 280 56.4
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 2.0e-63 247.3 204 65.2
Pp3c14_14130 Physcomitrium patens HOM05D005952 ORTHO05D007262 8.1e-49 198.7 147 64.6
FAN23G0106 Fragaria x ananassa HOM05D005952 ORTHO05D007262 4.6e-44 183.0 159 62.3
Hma1.2p1_0668F.1_g200040 Hydrangea macrophylla HOM05D005952 ORTHO05D007262 3.0e-43 180.3 98 84.7
FAN04G0535 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.0e-30 138.7 112 69.6
HanXRQChr03g0071651 Helianthus annuus HOM05D005952 ORTHO05D007262 2.2e-30 137.5 93 72.0
SEGI_23869 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 1.8e-27 127.9 105 55.2
Cre12.g542950 Chlamydomonas reinhardtii HOM05D005952 ORTHO05D007262 7.2e-21 105.9 255 31.8
Migut.K01177 Erythranthe guttata HOM05D005952 ORTHO05D007262 2.7e-20 104.0 103 64.1
MCO04G375 Micromonas commoda HOM05D005952 ORTHO05D007262 2.3e-19 100.9 339 24.2
SEGI_30692 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 2.8e-17 94.0 115 45.2
Oeu029609.1 Olea europaea HOM05D005952 ORTHO05D007262 6.3e-17 92.8 62 66.1
BcaC03g16356 Brassica carinata HOM05D029489 ORTHO05D007262 2.9e-06 57.4 38 68.4


User provided reference genes

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