Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.1e-142 510.0 262 100.0
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 8.1e-138 493.8 262 94.7
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 2.2e-119 432.6 262 84.7
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 3.8e-87 325.5 258 65.1
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 7.4e-83 311.2 261 61.7
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 6.3e-74 281.6 250 59.6
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 1.1e-70 270.8 256 56.6
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 1.2e-61 240.7 263 50.2
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 9.8e-59 231.1 270 51.5
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 7.2e-54 214.9 268 46.3
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 2.0e-51 206.8 268 45.1
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 1.4e-49 200.7 252 47.2
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.7e-48 196.4 263 43.3
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 3.3e-46 189.5 243 44.0
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 5.6e-46 188.7 263 43.3
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.0e-43 180.3 264 42.0
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 4.9e-42 175.6 263 38.0
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 6.4e-42 175.3 262 38.9
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 1.1e-41 174.5 260 37.7
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 2.4e-41 173.3 260 38.8
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 4.6e-40 169.1 220 39.5
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 6.0e-40 168.7 260 39.2
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 6.0e-40 168.7 260 37.3
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 1.0e-39 167.9 256 38.3
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 1.7e-39 167.2 265 38.9
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 2.3e-39 166.8 260 37.3
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 2.3e-39 166.8 260 37.7
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 3.0e-39 166.4 259 36.7
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 3.9e-39 166.0 262 37.0
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 3.9e-39 166.0 260 39.2
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 5.0e-39 165.6 261 37.2
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 6.6e-39 165.2 262 38.5
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 6.6e-39 165.2 258 36.8
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 6.6e-39 165.2 261 37.2
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 1.1e-38 164.5 263 36.5
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 1.1e-38 164.5 260 37.3
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 1.5e-38 164.1 262 35.9
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 1.5e-38 164.1 263 35.7
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 1.9e-38 163.7 262 36.3
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 2.5e-38 163.3 262 36.6
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 4.3e-38 162.5 258 39.5
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 5.6e-38 162.2 259 37.1
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 5.6e-38 162.2 259 36.3
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 7.3e-38 161.8 261 36.8
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 9.5e-38 161.4 263 35.4
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 9.5e-38 161.4 260 37.7
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 9.5e-38 161.4 261 35.6
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 9.5e-38 161.4 267 37.5
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 1.2e-37 161.0 257 36.2
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 1.6e-37 160.6 260 38.5
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 1.6e-37 160.6 260 36.9
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 2.1e-37 160.2 260 37.3
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 2.1e-37 160.2 264 35.2
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 2.8e-37 159.8 260 36.2
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 2.8e-37 159.8 260 38.1
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 6.2e-37 158.7 260 36.5
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 1.1e-36 157.9 260 37.3
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 1.1e-36 157.9 259 35.1
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 1.4e-36 157.5 260 35.8
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 2.3e-36 156.8 260 36.2
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 2.3e-36 156.8 262 38.5
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 3.1e-36 156.4 262 37.0
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 3.1e-36 156.4 260 35.8
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 5.2e-36 155.6 259 34.4
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 6.8e-36 155.2 262 36.6
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 8.9e-36 154.8 220 40.0
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 1.2e-35 154.5 257 36.6
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.2e-35 154.5 258 36.0
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.2e-35 154.5 261 36.0
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 2.0e-35 153.7 260 34.6
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 2.6e-35 153.3 261 35.6
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.4e-35 152.9 260 35.4
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 5.8e-35 152.1 259 34.4
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 5.8e-35 152.1 261 35.6
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 7.5e-35 151.8 260 35.0
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 1.7e-34 150.6 263 33.5
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 1.7e-34 150.6 267 35.6
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 2.2e-34 150.2 260 36.5
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 4.9e-34 149.1 264 33.0
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 4.9e-34 149.1 261 36.0
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 4.9e-34 149.1 267 34.8
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 6.4e-34 148.7 260 35.8
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 6.4e-34 148.7 264 34.1
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 1.1e-33 147.9 359 31.5
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 1.4e-33 147.5 264 33.7
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.9e-33 147.1 269 34.2
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 2.4e-33 146.7 264 33.0
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 3.2e-33 146.4 263 35.0
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 3.2e-33 146.4 264 34.1
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 5.4e-33 145.6 260 35.4
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 7.1e-33 145.2 289 34.9
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 7.1e-33 145.2 324 33.3
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 1.6e-32 144.1 263 32.7
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 1.6e-32 144.1 263 32.3
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 1.6e-32 144.1 260 33.8
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 1.6e-32 144.1 322 32.0
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 2.1e-32 143.7 265 33.2
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.1e-32 143.7 260 34.6
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.1e-32 143.7 260 34.2
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.7e-32 143.3 107 67.3
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 2.7e-32 143.3 261 31.8
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 2.7e-32 143.3 221 37.1
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 3.5e-32 142.9 263 32.3
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 4.6e-32 142.5 265 32.5
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 4.6e-32 142.5 260 34.2
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 6.0e-32 142.1 263 31.9
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 7.8e-32 141.7 263 33.1
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 1.3e-31 141.0 260 33.8
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.7e-31 140.6 260 33.8
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 1.7e-31 140.6 221 37.1
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 1.7e-31 140.6 260 32.7
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 2.3e-31 140.2 231 35.1
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 3.0e-31 139.8 276 33.7
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 3.0e-31 139.8 357 30.8
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 3.9e-31 139.4 259 32.8
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 5.1e-31 139.0 262 33.6
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 8.6e-31 138.3 321 31.5
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 8.6e-31 138.3 262 33.6
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 1.1e-30 137.9 265 32.5
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 1.9e-30 137.1 221 36.2
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 1.2e-29 134.4 269 32.3
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.1e-29 133.7 257 35.8
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 3.6e-29 132.9 264 31.1
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 6.2e-29 132.1 264 33.0
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 1.4e-28 131.0 140 47.1
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 1.8e-28 130.6 264 32.6
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 2.3e-28 130.2 259 32.4
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.3e-28 130.2 265 31.3
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 6.8e-28 128.6 260 31.5
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 6.8e-28 128.6 243 35.0
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 2.9e-26 123.2 270 30.4
AUR62015500 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.9e-26 122.5 200 41.5
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 8.3e-26 121.7 272 31.2
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 1.9e-25 120.6 164 43.3
AUR62002202 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.4e-25 120.2 184 45.1
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 2.4e-25 120.2 250 32.8
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 3.2e-25 119.8 220 33.2
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 4.1e-25 119.4 199 35.2
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 1.6e-24 117.5 270 28.5
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 6.0e-24 115.5 144 39.6
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 7.8e-24 115.2 228 35.1
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 7.8e-24 115.2 222 33.8
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 1.7e-23 114.0 157 37.6
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 5.1e-23 112.5 151 38.4
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 1.5e-22 110.9 159 40.9
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 5.6e-22 109.0 293 28.7
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 3.1e-20 103.2 227 30.4
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 3.1e-20 103.2 267 30.3
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 9.9e-19 98.2 264 28.4
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 8.4e-18 95.1 265 27.2
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 1.1e-17 94.7 212 33.0
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 1.3e-15 87.8 211 30.3
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 1.3e-15 87.8 211 30.3
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.1e-12 78.2 89 43.8
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 1.1e-12 78.2 189 31.2
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.8e-12 77.4 254 26.4
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 9.0e-12 75.1 89 42.7
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.2e-11 74.7 228 32.5
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 5.4e-09 65.9 124 32.3
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 5.4e-09 65.9 73 47.9
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 5.1e-07 59.3 123 30.9


User provided reference genes

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