Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g117140 Amaranthus hybridus HOM05D000245 ORTHO05D021158 3.6e-37 157.9 90 100.0
Ah.03g147330 Amaranthus hybridus HOM05D000245 ORTHO05D021158 4.1e-33 144.4 90 93.3
Ah.15g093020 Amaranthus hybridus HOM05D000245 ORTHO05D000020 2.1e-32 142.1 90 81.1
AUR62043487 Chenopodium quinoa HOM05D000245 ORTHO05D000020 4.2e-17 91.3 55 74.5
AUR62008711 Chenopodium quinoa HOM05D000245 ORTHO05D000020 1.2e-16 89.7 55 72.7
AUR62025525 Chenopodium quinoa HOM05D000245 ORTHO05D000020 2.7e-16 88.6 55 72.7
Hund05450 Selenicereus undatus HOM05D000245 ORTHO05D000020 1.0e-15 86.7 62 67.7
EL10Ac7g17571 Beta vulgaris HOM05D000245 ORTHO05D000020 6.6e-15 84.0 60 70.0
Dinv33076 Davidia involucrata HOM05D000245 ORTHO05D000020 9.0e-12 73.6 65 58.5
HanXRQChr06g0167701 Helianthus annuus HOM05D000245 ORTHO05D000020 1.2e-11 73.2 56 58.9
Ah.08g213540 Amaranthus hybridus HOM05D001493 ORTHO05D000020 2.0e-11 72.4 56 58.9
QL08p052215 Quercus lobata HOM05D000245 ORTHO05D021158 2.0e-11 72.4 55 58.2
TAR362G0701 Trochodendron aralioides HOM05D000245 ORTHO05D000020 4.4e-11 71.2 57 56.1
Sc17g0003030 Simmondsia chinensis HOM05D000245 ORTHO05D000020 5.8e-11 70.9 60 56.7
Oeu008343.1 Olea europaea HOM05D000245 ORTHO05D000020 7.6e-11 70.5 57 59.6
CiPaw.07G112200 Carya illinoinensis HOM05D000245 ORTHO05D000020 9.9e-11 70.1 55 58.2
HanXRQChr04g0114741 Helianthus annuus HOM05D000245 ORTHO05D000020 9.9e-11 70.1 53 60.4
Dinv02023 Davidia involucrata HOM05D000245 ORTHO05D021158 1.7e-10 69.3 63 54.0
Dinv10040 Davidia involucrata HOM05D000245 ORTHO05D000020 1.7e-10 69.3 63 54.0
Dinv19668 Davidia involucrata HOM05D000245 ORTHO05D000020 1.7e-10 69.3 63 54.0
QL12p027792 Quercus lobata HOM05D000245 ORTHO05D000020 2.9e-10 68.6 55 56.4
TAR633G0380 Trochodendron aralioides HOM05D000245 ORTHO05D000020 2.9e-10 68.6 55 56.4
Actinidia21434 Actinidia chinensis HOM05D000245 ORTHO05D000020 3.8e-10 68.2 58 56.9
Oeu008345.1 Olea europaea HOM05D000245 ORTHO05D000020 3.8e-10 68.2 57 57.9
ECA236G1351 Erigeron canadensis HOM05D000245 ORTHO05D000020 4.9e-10 67.8 56 57.1
Potri.002G201600 Populus trichocarpa HOM05D000245 ORTHO05D000020 4.9e-10 67.8 56 60.7
FAN15G3494 Fragaria x ananassa HOM05D000245 ORTHO05D000020 6.4e-10 67.4 55 63.6
Lsat_1_v5_gn_8_164520 Lactuca sativa HOM05D000245 ORTHO05D000020 6.4e-10 67.4 55 58.2
Actinidia25820 Actinidia chinensis HOM05D000245 ORTHO05D000020 1.4e-09 66.2 62 54.8
CSS0031448 Camellia sinensis var. sinensis HOM05D000245 ORTHO05D000020 1.4e-09 66.2 58 55.2
FvH4_2g26080 Fragaria vesca HOM05D000245 ORTHO05D000020 1.4e-09 66.2 55 63.6
FAN20G2087 Fragaria x ananassa HOM05D000245 ORTHO05D000020 1.4e-09 66.2 55 61.8
FAN24G2143 Fragaria x ananassa HOM05D000245 ORTHO05D000020 1.4e-09 66.2 55 63.6
MELO3C017940.2 Cucumis melo HOM05D000245 ORTHO05D000020 1.9e-09 65.9 55 58.2
DCAR_005784 Daucus carota HOM05D000245 ORTHO05D000020 1.9e-09 65.9 56 55.4
FAN27G1186 Fragaria x ananassa HOM05D000245 ORTHO05D000020 1.9e-09 65.9 55 60.0
Sabra02G0157400 Salix brachista HOM05D000245 ORTHO05D000020 1.9e-09 65.9 55 61.8
Lj1C22T12 Lonicera japonica HOM05D000245 ORTHO05D000020 2.4e-09 65.5 57 57.9
Cpa.g.sc151.30 Carica papaya HOM05D000245 ORTHO05D000020 3.2e-09 65.1 55 54.5
CAN.G862.63 Capsicum annuum HOM05D000245 ORTHO05D000020 4.2e-09 64.7 54 57.4
Peaxi162Scf00001g00352 Petunia axillaris HOM05D000245 ORTHO05D000020 4.2e-09 64.7 56 51.8
PGR119G0257 Punica granatum HOM05D000245 ORTHO05D000020 4.2e-09 64.7 55 60.0
vmacro15137 Vaccinium macrocarpon HOM05D000245 ORTHO05D000020 4.2e-09 64.7 63 50.8
CsaV3_4G000990 Cucumis sativus L. HOM05D000245 ORTHO05D000020 5.4e-09 64.3 55 56.4
RcHm_v2.0_Chr6g0294441 Rosa chinensis HOM05D000245 ORTHO05D000020 5.4e-09 64.3 55 54.5
MSTRG.21648 Avicennia marina HOM05D000245 ORTHO05D000020 7.1e-09 63.9 56 57.1
Duzib138G0004 Durio zibethinus HOM05D000245 ORTHO05D000020 7.1e-09 63.9 55 58.2
Prupe.8G264900 Prunus persica HOM05D000245 ORTHO05D000020 9.3e-09 63.5 55 61.8
CSS0035247 Camellia sinensis var. sinensis HOM05D000245 ORTHO05D000020 1.2e-08 63.2 56 51.8
ClCG10G011120 Citrullus lanatus HOM05D000245 ORTHO05D000020 1.2e-08 63.2 55 54.5
Duzib138G0617 Durio zibethinus HOM05D000245 ORTHO05D000020 1.2e-08 63.2 57 57.9
Manes.01G222600 Manihot esculenta HOM05D000245 ORTHO05D000020 1.2e-08 63.2 53 56.6
Nitab4.5_0000116g0330 Nicotiana tabacum HOM05D000245 ORTHO05D000020 1.2e-08 63.2 55 52.7
Sopen09g030200 Solanum pennellii HOM05D000245 ORTHO05D000020 1.2e-08 63.2 55 54.5
MD11G1306500 Malus domestica HOM05D000245 ORTHO05D000020 2.1e-08 62.4 61 54.1
Sed0016897 Sechium edule HOM05D000245 ORTHO05D000020 2.1e-08 62.4 55 54.5
MSTRG.21649 Avicennia marina HOM05D000245 ORTHO05D000020 2.7e-08 62.0 54 55.6
COL.COLO4_23306 Corchorus olitorius HOM05D000245 ORTHO05D000020 2.7e-08 62.0 55 54.5
THA.LOC104817479 Tarenaya hassleriana HOM05D000245 ORTHO05D000020 2.7e-08 62.0 62 58.1
Duzib133G0934 Durio zibethinus HOM05D000245 ORTHO05D000020 3.5e-08 61.6 76 46.1
Eucgr.H01085 Eucalyptus grandis HOM05D000245 ORTHO05D000020 3.5e-08 61.6 55 56.4
Nitab4.5_0000803g0030 Nicotiana tabacum HOM05D000245 ORTHO05D000020 3.5e-08 61.6 55 50.9
Actinidia21025 Actinidia chinensis HOM05D000245 ORTHO05D000020 4.6e-08 61.2 56 51.8
Nn4g25739 Nelumbo nucifera HOM05D000245 ORTHO05D000020 4.6e-08 61.2 63 49.2
Solyc09g075420.3 Solanum lycopersicum HOM05D000245 ORTHO05D000020 4.6e-08 61.2 55 52.7
PGSC0003DMG400031795 Solanum tuberosum HOM05D000245 ORTHO05D000020 4.6e-08 61.2 55 52.7
CANSAT25G2954 Cannabis sativa HOM05D000245 ORTHO05D000020 6.0e-08 60.8 55 54.5
Gorai.004G051600 Gossypium raimondii HOM05D000245 ORTHO05D000020 6.0e-08 60.8 58 56.9
Gorai.004G142800 Gossypium raimondii HOM05D000245 ORTHO05D000020 6.0e-08 60.8 55 54.5
Thecc.01G305800 Theobroma cacao HOM05D000245 ORTHO05D000020 7.8e-08 60.5 52 57.7
Gohir.D08G051700 Gossypium hirsutum HOM05D000245 ORTHO05D000020 1.0e-07 60.1 56 57.1
Thecc.01G305400 Theobroma cacao HOM05D000245 ORTHO05D000020 1.0e-07 60.1 55 52.7
ATR0693G281 Amborella trichopoda HOM05D000245 ORTHO05D000020 1.3e-07 59.7 62 50.0
Migut.D00130 Erythranthe guttata HOM05D000245 ORTHO05D000020 1.3e-07 59.7 54 53.7
Gohir.D08G139100 Gossypium hirsutum HOM05D000245 ORTHO05D000020 1.3e-07 59.7 55 52.7
SGA_v2.0_scaffold2G01381 Striga asiatica HOM05D000245 ORTHO05D000020 1.3e-07 59.7 60 48.3
THA.LOC104804723 Tarenaya hassleriana HOM05D000245 ORTHO05D000020 1.3e-07 59.7 61 45.9
THA.LOC104814747 Tarenaya hassleriana HOM05D000245 ORTHO05D000020 1.3e-07 59.7 61 45.9
THA.LOC104827676 Tarenaya hassleriana HOM05D000245 ORTHO05D000020 1.3e-07 59.7 61 45.9
Haze_04979 Corylus avellana HOM05D000245 ORTHO05D000020 1.7e-07 59.3 49 61.2
ATR0099G024 Amborella trichopoda HOM05D000245 ORTHO05D000020 2.3e-07 58.9 55 47.3
Rhsim01G0287500 Rhododendron simsii HOM05D000245 ORTHO05D000020 2.3e-07 58.9 55 54.5
Glyma.10G016500 Glycine max HOM05D000245 ORTHO05D000020 3.0e-07 58.5 54 55.6
Gohir.A08G118100 Gossypium hirsutum HOM05D000245 ORTHO05D000020 3.0e-07 58.5 55 50.9
PSO170G1965 Papaver somniferum HOM05D000245 ORTHO05D000020 3.0e-07 58.5 82 37.8
Thecc.01G305200 Theobroma cacao HOM05D000245 ORTHO05D000020 3.0e-07 58.5 58 50.0
MSTRG.18135 Avicennia marina HOM05D000245 ORTHO05D000020 3.9e-07 58.2 54 55.6
unitig_60.g25583 Utricularia gibba HOM05D000245 ORTHO05D000020 3.9e-07 58.2 54 50.0
Cc01_g21090 Coffea canephora HOM05D000245 ORTHO05D000020 5.1e-07 57.8 56 48.2
Gohir.A08G041600 Gossypium hirsutum HOM05D000245 ORTHO05D000020 5.1e-07 57.8 58 53.4
Lj5g0022230 Lotus japonicus HOM05D000245 ORTHO05D000020 5.1e-07 57.8 53 52.8
Phvul.007G217800 Phaseolus vulgaris HOM05D000245 ORTHO05D000020 6.6e-07 57.4 54 53.7
Cfa005868 Carpinus fangiana HOM05D000245 ORTHO05D000020 1.1e-06 56.6 49 53.1
COL.COLO4_23308 Corchorus olitorius HOM05D000245 ORTHO05D000020 1.1e-06 56.6 51 56.9
Actinidia20003 Actinidia chinensis HOM05D000245 ORTHO05D021158 1.5e-06 56.2 57 47.4
Aa31LG1G28850 Aethionema arabicum HOM05D000245 ORTHO05D000020 1.5e-06 56.2 56 53.6
TWI14G1013 Tripterygium wilfordii HOM05D000245 ORTHO05D000020 1.5e-06 56.2 52 55.8
Potri.014G126100 Populus trichocarpa HOM05D000245 ORTHO05D000020 1.9e-06 55.8 55 52.7
VMungo0720G1171 Vigna mungo HOM05D000245 ORTHO05D000020 1.9e-06 55.8 54 51.9
unitig_0.g405 Utricularia gibba HOM05D000245 ORTHO05D000020 2.5e-06 55.5 54 55.6
MBI18_g21797_MAGBIO Magnolia biondii HOM05D000245 ORTHO05D000020 3.3e-06 55.1 56 50.0
THA.LOC104802181 Tarenaya hassleriana HOM05D000245 ORTHO05D000020 3.3e-06 55.1 55 47.3
Hma1.2p1_0494F.1_g165440 Hydrangea macrophylla HOM05D000245 ORTHO05D000020 4.3e-06 54.7 53 49.1
PSO407G0293 Papaver somniferum HOM05D000245 ORTHO05D000020 4.3e-06 54.7 58 46.6
GSVIVG01028050001 Vitis vinifera HOM05D000245 ORTHO05D000020 4.3e-06 54.7 58 50.0
Ca_10317_v3 Cicer arietinum L. HOM05D000245 ORTHO05D021158 5.6e-06 54.3 52 53.8
BcaB06g29442 Brassica carinata HOM05D000245 ORTHO05D000020 7.3e-06 53.9 55 49.1
CDE05G0571 Ceratophyllum demersum HOM05D000245 ORTHO05D000020 7.3e-06 53.9 62 41.9
TAR383G0807 Trochodendron aralioides HOM05D000245 ORTHO05D000020 7.3e-06 53.9 61 44.3
Actinidia26001 Actinidia chinensis HOM05D000245 ORTHO05D000020 9.6e-06 53.5 60 41.7
CSS0041210 Camellia sinensis var. sinensis HOM05D000245 ORTHO05D000020 9.6e-06 53.5 62 43.5
Ciclev10021059m.g Citrus clementina HOM05D000245 ORTHO05D000020 9.6e-06 53.5 63 42.9
Os01g0313300 Oryza sativa ssp. japonica HOM05D000245 ORTHO05D000020 9.6e-06 53.5 60 50.0


User provided reference genes

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