Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.02g116970 Amaranthus hybridus HOM05D007062 ORTHO05D008941 5.1e-114 414.8 282 100.0
EL10Ac5g13006 Beta vulgaris HOM05D007062 ORTHO05D008941 9.1e-79 297.7 265 70.9
Hund11577 Selenicereus undatus HOM05D007062 ORTHO05D008941 8.6e-69 264.6 272 78.3
CAN.G1217.21 Capsicum annuum HOM05D007062 ORTHO05D008941 8.9e-66 254.6 271 75.6
PGSC0003DMG400004788 Solanum tuberosum HOM05D007062 ORTHO05D008941 1.4e-63 247.3 270 74.8
Actinidia02105 Actinidia chinensis HOM05D007062 ORTHO05D008941 1.9e-63 246.9 268 75.4
Migut.A00806 Erythranthe guttata HOM05D007062 ORTHO05D008941 3.2e-63 246.1 270 74.1
Peaxi162Scf00002g00075 Petunia axillaris HOM05D007062 ORTHO05D008941 5.4e-63 245.4 273 72.2
Sopen08g027570 Solanum pennellii HOM05D007062 ORTHO05D008941 1.2e-62 244.2 270 75.6
Solyc08g079110.4 Solanum lycopersicum HOM05D007062 ORTHO05D008941 3.5e-62 242.7 270 75.9
Lsat_1_v5_gn_6_2361 Lactuca sativa HOM05D007062 ORTHO05D008941 6.0e-62 241.9 274 74.5
Nitab4.5_0000993g0090 Nicotiana tabacum HOM05D007062 ORTHO05D008941 7.8e-62 241.5 275 74.5
Glyma.11G030700 Glycine max HOM05D007062 ORTHO05D008941 1.3e-61 240.7 265 75.5
Sc06g0007370 Simmondsia chinensis HOM05D007062 ORTHO05D008941 2.3e-61 240.0 269 74.0
Cc08_g12960 Coffea canephora HOM05D007062 ORTHO05D008941 3.0e-61 239.6 273 74.7
CSS0025302 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 5.0e-61 238.8 285 71.2
CSS0040813 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 5.0e-61 238.8 280 72.5
Nitab4.5_0005649g0010 Nicotiana tabacum HOM05D007062 ORTHO05D008941 6.6e-61 238.4 275 74.2
SalBow6G7097 Salvia bowleyana HOM05D007062 ORTHO05D008941 1.5e-60 237.3 268 74.6
MELO3C005562.2 Cucumis melo HOM05D007062 ORTHO05D008941 4.3e-60 235.7 220 82.7
arahy.Tifrunner.gnm1.ann1.06MV4V Arachis hypogaea HOM05D007062 ORTHO05D008941 7.3e-60 235.0 221 84.6
arahy.Tifrunner.gnm1.ann1.FU46H2 Arachis hypogaea HOM05D007062 ORTHO05D008941 7.3e-60 235.0 221 84.6
CsaV3_5G003940 Cucumis sativus L. HOM05D007062 ORTHO05D008941 1.2e-59 234.2 272 69.9
Phvul.002G061100 Phaseolus vulgaris HOM05D007062 ORTHO05D008941 2.1e-59 233.4 276 72.5
Potri.003G112900 Populus trichocarpa HOM05D007062 ORTHO05D008941 3.6e-59 232.6 277 69.3
Sed0027513 Sechium edule HOM05D007062 ORTHO05D008941 3.6e-59 232.6 268 72.8
TAR375G0275 Trochodendron aralioides HOM05D007062 ORTHO05D008941 3.6e-59 232.6 265 72.1
ClCG01G003790 Citrullus lanatus HOM05D007062 ORTHO05D008941 4.7e-59 232.3 270 71.1
GSVIVG01001267001 Vitis vinifera HOM05D007062 ORTHO05D008941 4.7e-59 232.3 221 85.1
Prupe.5G075900 Prunus persica HOM05D007062 ORTHO05D008941 1.1e-58 231.1 252 71.8
ECA232G1654 Erigeron canadensis HOM05D007062 ORTHO05D008941 1.4e-58 230.7 277 70.8
Manes.01G076100 Manihot esculenta HOM05D007062 ORTHO05D008941 1.4e-58 230.7 222 80.2
TWI60G0310 Tripterygium wilfordii HOM05D007062 ORTHO05D008941 2.3e-58 229.9 276 71.4
SGA_v2.0_scaffold120G32845 Striga asiatica HOM05D007062 ORTHO05D008941 3.1e-58 229.6 277 73.6
Lj2g0026876 Lotus japonicus HOM05D007062 ORTHO05D008941 5.2e-58 228.8 292 70.5
Lalb_Chr16g0379721 Lupinus albus HOM05D007062 ORTHO05D008941 6.8e-58 228.4 223 83.4
QL12p014002 Quercus lobata HOM05D007062 ORTHO05D008941 6.8e-58 228.4 313 46.6
Cpa.g.sc29.119 Carica papaya HOM05D007062 ORTHO05D008941 8.9e-58 228.0 268 72.4
Eucgr.D02028 Eucalyptus grandis HOM05D007062 ORTHO05D008941 8.9e-58 228.0 257 60.3
CiPaw.12G106400 Carya illinoinensis HOM05D007062 ORTHO05D008941 2.0e-57 226.9 281 70.5
HPP92_003260 Vanilla planifolia HOM05D007062 ORTHO05D008941 2.0e-57 226.9 222 84.7
MSTRG.25539 Avicennia marina HOM05D007062 ORTHO05D008941 2.6e-57 226.5 276 62.3
PSO782G2909 Papaver somniferum HOM05D007062 ORTHO05D008941 2.6e-57 226.5 272 72.4
PGR031G1282 Punica granatum HOM05D007062 ORTHO05D008941 2.6e-57 226.5 242 67.4
VMungo1215G0274 Vigna mungo HOM05D007062 ORTHO05D008941 2.6e-57 226.5 266 72.6
Ciclev10021545m.g Citrus clementina HOM05D007062 ORTHO05D008941 4.4e-57 225.7 218 84.9
Atru.chr9.1388 Acer truncatum HOM05D007062 ORTHO05D008941 5.8e-57 225.3 221 83.7
PSO063G0503 Papaver somniferum HOM05D007062 ORTHO05D008941 7.5e-57 224.9 240 78.8
TPR.G25898 Trifolium pratense HOM05D007062 ORTHO05D008941 9.8e-57 224.6 273 72.2
CANSAT21G0465 Cannabis sativa HOM05D007062 ORTHO05D008941 1.3e-56 224.2 234 79.1
FvH4_5g00330 Fragaria vesca HOM05D007062 ORTHO05D008941 1.7e-56 223.8 282 69.9
RcHm_v2.0_Chr7g0202221 Rosa chinensis HOM05D007062 ORTHO05D008941 1.7e-56 223.8 276 69.6
Zm00001eb248670 Zea mays HOM05D007062 ORTHO05D008941 4.9e-56 222.2 220 81.4
HanXRQChr02g0049591 Helianthus annuus HOM05D007062 ORTHO05D008941 8.3e-56 221.5 303 64.7
Medtr5g012110 Medicago truncatula HOM05D007062 ORTHO05D008941 1.4e-55 220.7 267 72.3
Os02g0643500 Oryza sativa ssp. japonica HOM05D007062 ORTHO05D008941 1.9e-55 220.3 215 73.5
vmacro05405 Vaccinium macrocarpon HOM05D007062 ORTHO05D008941 1.9e-55 220.3 194 86.6
FAN08G1089 Fragaria x ananassa HOM05D007062 ORTHO05D008941 2.4e-55 219.9 225 81.3
FAN18G0001 Fragaria x ananassa HOM05D007062 ORTHO05D008941 2.4e-55 219.9 225 81.3
THA.LOC104818475 Tarenaya hassleriana HOM05D007062 ORTHO05D008941 3.2e-55 219.5 221 78.7
Duzib205G0297 Durio zibethinus HOM05D007062 ORTHO05D008941 2.1e-54 216.9 228 80.3
AUR62007471 Chenopodium quinoa HOM05D007062 ORTHO05D008941 1.0e-53 214.5 183 88.5
ATR0568G204 Amborella trichopoda HOM05D007062 ORTHO05D008941 1.3e-53 214.2 194 87.6
BcaC07g42568 Brassica carinata HOM05D007062 ORTHO05D008941 1.3e-53 214.2 281 69.0
Thecc.03G257500 Theobroma cacao HOM05D007062 ORTHO05D008941 2.3e-53 213.4 218 76.6
Aqoxy5G03933 Aquilegia oxysepala HOM05D007062 ORTHO05D008941 3.9e-53 212.6 224 80.4
Aa31LG1G2430 Aethionema arabicum HOM05D007062 ORTHO05D008941 6.6e-53 211.8 290 58.6
Gohir.D08G190800 Gossypium hirsutum HOM05D007062 ORTHO05D008941 6.6e-53 211.8 212 77.8
BraA09t41747Z Brassica rapa HOM05D007062 ORTHO05D008941 8.6e-53 211.5 284 68.7
BcaC07g41714 Brassica carinata HOM05D007062 ORTHO05D008941 2.5e-52 209.9 283 68.2
A09p63980 Brassica napus HOM05D007062 ORTHO05D008941 2.5e-52 209.9 220 80.9
Gorai.004G200900 Gossypium raimondii HOM05D007062 ORTHO05D008941 2.5e-52 209.9 212 72.6
C08p47500 Brassica napus HOM05D007062 ORTHO05D008941 3.3e-52 209.5 286 67.8
BolC8t52291H Brassica oleracea HOM05D007062 ORTHO05D008941 3.3e-52 209.5 286 67.8
Sp1g10870 Schrenkiella parvula HOM05D007062 ORTHO05D008941 3.3e-52 209.5 284 68.3
AT1G12250 Arabidopsis thaliana HOM05D007062 ORTHO05D008941 4.3e-52 209.1 281 67.3
Carub.0001s1193 Capsella rubella HOM05D007062 ORTHO05D008941 4.3e-52 209.1 282 67.0
FAN04G1528 Fragaria x ananassa HOM05D007062 ORTHO05D008941 4.3e-52 209.1 264 51.5
AL1G23540 Arabidopsis lyrata HOM05D007062 ORTHO05D008941 5.6e-52 208.8 281 67.3
MD06G1065500 Malus domestica HOM05D007062 ORTHO05D008941 5.6e-52 208.8 277 67.9
Thhalv10008422m.g Eutrema salsugineum HOM05D007062 ORTHO05D008941 7.3e-52 208.4 284 69.4
SEGI_22381 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 3.6e-51 206.1 233 74.7
Gohir.A08G172400 Gossypium hirsutum HOM05D007062 ORTHO05D008941 2.0e-49 200.3 193 74.1
Mapoly0083s0077 Marchantia polymorpha HOM05D007062 ORTHO05D008941 1.6e-46 190.7 217 63.6
Sabra03G0078200 Salix brachista HOM05D007062 ORTHO05D008941 7.8e-46 188.3 364 40.1
Pp3c21_17930 Physcomitrium patens HOM05D007062 ORTHO05D008941 3.9e-45 186.0 213 74.6
CBR_g19734 Chara braunii HOM05D007062 ORTHO05D008941 5.6e-44 182.2 219 60.7
SMO137G0193 Selaginella moellendorffii HOM05D007062 ORTHO05D008941 5.2e-42 175.6 213 61.5
FAN13G1422 Fragaria x ananassa HOM05D007062 ORTHO05D008941 3.8e-40 169.5 199 54.8
AUR62039929 Chenopodium quinoa HOM05D007062 ORTHO05D008941 1.9e-39 167.2 94 85.1
AUR62043761 Chenopodium quinoa HOM05D007062 ORTHO05D008941 1.9e-39 167.2 94 85.1
Hma1.2p1_1691F.1_g297810 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 7.8e-38 161.8 92 81.5
COL.COLO4_37223 Corchorus olitorius HOM05D007062 ORTHO05D008941 2.3e-37 160.2 94 80.9
DCAR_004919 Daucus carota HOM05D007062 ORTHO05D008941 3.0e-37 159.8 88 85.2
Glyma.01G211100 Glycine max HOM05D007062 ORTHO05D008941 3.0e-37 159.8 230 47.0
Hma1.2p1_1691F.1_g297800 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 7.3e-36 155.2 85 83.5
CDE04G1356 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 1.3e-35 154.5 84 86.9
CARHR012560 Cardamine hirsuta HOM05D007062 ORTHO05D008941 2.9e-32 143.3 84 83.3
Dinv39100 Davidia involucrata HOM05D007062 ORTHO05D008941 2.3e-29 133.7 184 53.3
Cfa012777 Carpinus fangiana HOM05D007062 ORTHO05D008941 3.4e-25 119.8 210 69.0
AagrBONN_evm.TU.Sc2ySwM_228.1920 Anthoceros agrestis HOM05D000741 ORTHO05D000506 1.4e-23 114.4 172 65.1
Nn6g34047 Nelumbo nucifera HOM05D007062 ORTHO05D008941 3.2e-23 113.2 117 57.3
Psat2g178680 Pisum sativum HOM05D007062 ORTHO05D008941 1.0e-21 108.2 201 68.7
Haze_08582 Corylus avellana HOM05D007062 ORTHO05D008941 1.8e-21 107.5 141 56.7
GSVIVG01001268001 Vitis vinifera HOM05D007062 ORTHO05D008941 4.3e-20 102.8 89 62.9
CDE04G0607 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 3.4e-17 93.2 69 68.1
Cre17.g721700 Chlamydomonas reinhardtii HOM05D007062 ORTHO05D008941 8.4e-16 88.6 182 48.4
CAN.G1293.1 Capsicum annuum HOM05D007062 ORTHO05D008941 1.1e-15 88.2 61 73.8
Lj8A257G61 Lonicera japonica HOM05D007062 ORTHO05D008941 1.9e-12 77.4 43 86.0
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 2.4e-10 70.5 96 47.9
COL.COLO4_37221 Corchorus olitorius HOM05D007062 ORTHO05D008941 7.6e-09 65.5 56 64.3
MCO12G419 Micromonas commoda HOM05D007062 ORTHO05D008941 7.6e-09 65.5 66 54.5
SEGI_25676 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 2.5e-07 60.5 54 61.1
MCO04G309 Micromonas commoda HOM05D007062 ORTHO05D008941 9.3e-07 58.5 53 54.7


User provided reference genes

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